Wall clock time and date at job start Mon Mar 30 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00087 * 2 1 4 4 C 1.50704 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.93999 * 90.00742 * 4 3 2 6 6 C 1.38147 * 120.05547 * 180.02562 * 5 4 3 7 7 C 1.38731 * 119.94447 * 359.97438 * 6 5 4 8 8 O 1.35893 * 120.05879 * 180.02562 * 7 6 5 9 9 C 1.42904 * 117.00192 * 185.51773 * 8 7 6 10 10 H 1.08991 * 110.91612 * 32.39460 * 9 8 7 11 11 C 1.55153 * 111.00348 * 156.30208 * 9 8 7 12 12 C 1.54324 * 102.94187 * 153.57549 * 11 9 8 13 13 N 1.47024 * 107.26974 * 337.80265 * 12 11 9 14 14 C 1.36937 * 125.64738 * 178.95930 * 13 12 11 15 15 H 1.08001 * 120.00061 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00097 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47358 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47556 * 119.99600 * 18 16 14 21 21 H 1.48500 * 109.47177 * 239.99389 * 18 16 14 22 22 C 1.47423 * 108.70593 * 358.94239 * 13 12 11 23 23 C 1.38739 * 119.88354 * 0.28558 * 7 6 5 24 24 C 1.38142 * 119.94476 * 359.46455 * 23 7 6 25 25 H 1.08995 * 109.47184 * 59.99336 * 1 2 3 26 26 H 1.09000 * 109.46790 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46484 * 299.98849 * 1 2 3 28 28 H 1.08994 * 109.46683 * 60.00700 * 3 2 1 29 29 H 1.08997 * 109.47377 * 300.00550 * 3 2 1 30 30 H 1.07998 * 119.97769 * 359.97026 * 5 4 3 31 31 H 1.08001 * 120.02885 * 179.97438 * 6 5 4 32 32 H 1.08995 * 110.72022 * 271.93466 * 11 9 8 33 33 H 1.08996 * 110.72840 * 35.03683 * 11 9 8 34 34 H 1.08996 * 109.88626 * 97.21961 * 12 11 9 35 35 H 1.09003 * 109.88651 * 218.38989 * 12 11 9 36 36 H 0.96998 * 119.99965 * 180.02562 * 17 16 14 37 37 H 1.09003 * 110.36601 * 265.29084 * 22 13 12 38 38 H 1.08994 * 110.36741 * 142.96137 * 22 13 12 39 39 H 1.08004 * 120.02228 * 179.71948 * 23 7 6 40 40 H 1.08000 * 119.96814 * 180.23255 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2000 1.1322 -1.1990 6 6 5.5771 1.0226 -1.2024 7 6 6.2704 0.9673 -0.0020 8 8 7.6250 0.8599 -0.0026 9 6 8.2627 0.6863 1.2645 10 1 7.6270 0.1207 1.9457 11 6 9.6474 0.0056 1.1015 12 6 10.4261 0.5064 2.3362 13 7 9.7792 1.7475 2.7863 14 6 10.1560 2.4966 3.8690 15 1 9.6138 3.3970 4.1177 16 6 11.2348 2.0988 4.6467 17 7 11.8952 1.0014 4.3438 18 14 11.7492 3.1211 6.1231 19 1 10.8521 4.2980 6.2471 20 1 11.6560 2.2953 7.3538 21 1 13.1488 3.5830 5.9419 22 6 8.6580 2.0523 1.8790 23 6 5.5777 1.0164 1.1992 24 6 4.2011 1.1313 1.1971 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 1.6887 1.8462 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.6600 1.1748 -2.1333 31 1 6.1136 0.9799 -2.1387 32 1 9.5484 -1.0797 1.1222 33 1 10.1306 0.3299 0.1799 34 1 10.3856 -0.2411 3.1284 35 1 11.4628 0.7061 2.0648 36 1 12.6488 0.7232 4.8875 37 1 8.9788 2.7412 1.0975 38 1 7.8219 2.4733 2.4372 39 1 6.1148 0.9690 2.1350 40 1 3.6618 1.1733 2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227673925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:45 Heat of formation + Delta-G solvation = -27.694543 kcal Electronic energy + Delta-G solvation = -20943.539828 eV Core-core repulsion = 17724.720561 eV Total energy + Delta-G solvation = -3218.819267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14369 -38.53114 -37.38908 -36.06535 -32.41184 -31.16702 -30.96026 -29.28218 -27.54056 -27.03085 -25.25666 -24.43003 -22.89369 -21.46345 -20.22631 -20.02075 -18.09916 -17.06248 -16.59669 -16.19331 -16.11116 -15.31513 -15.01171 -14.70687 -14.47558 -14.14451 -13.85157 -13.44745 -13.32669 -12.91362 -12.43804 -12.39547 -12.23320 -11.97711 -11.79147 -11.57943 -11.21782 -10.98361 -10.90642 -10.72381 -10.34171 -10.20886 -10.04652 -9.93324 -9.85860 -9.72209 -8.93735 -8.65596 -8.00392 -6.90749 -5.76359 -3.11006 1.38146 1.42074 3.37514 3.40951 3.44648 3.46461 3.53574 4.06502 4.46872 4.74993 4.77284 4.94862 5.03517 5.08318 5.12513 5.18257 5.25495 5.30692 5.38898 5.41942 5.45755 5.57954 5.60871 5.68449 5.80111 6.05454 6.16384 6.30540 6.34678 6.41484 6.44322 6.57991 6.60179 6.65898 6.88073 6.92987 7.49563 7.53547 7.69500 7.78575 8.18947 9.15833 9.75480 10.39995 11.35521 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.003327 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.021231 B = 8412.951158 C = 9001.811728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.110 3.890 4 C -0.145 4.145 5 C -0.061 4.061 6 C -0.163 4.163 7 C 0.150 3.850 8 O -0.305 6.305 9 C 0.063 3.937 10 H 0.082 0.918 11 C -0.136 4.136 12 C 0.178 3.822 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.121 3.879 23 C -0.210 4.210 24 C -0.056 4.056 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.136 0.864 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.700 -1.347 -10.007 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.034 3.966 4 C -0.145 4.145 5 C -0.079 4.079 6 C -0.181 4.181 7 C 0.104 3.896 8 O -0.217 6.217 9 C 0.007 3.993 10 H 0.100 0.900 11 C -0.175 4.175 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.358 4.358 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C -0.006 4.006 23 C -0.229 4.229 24 C -0.074 4.074 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.154 0.846 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.273 -1.513 -9.995 20.883 hybrid contribution 0.081 0.714 1.023 1.250 sum -18.192 -0.799 -8.972 20.300 Atomic orbital electron populations 1.22743 0.81336 1.02720 0.99858 1.88005 1.19292 1.27899 1.95358 1.21255 0.90071 0.84735 1.00532 1.19361 0.93709 1.07838 0.93581 1.20746 0.93034 0.96746 0.97375 1.20401 0.93618 1.07654 0.96451 1.19162 0.83275 0.93277 0.93904 1.86108 1.16021 1.86108 1.33448 1.23903 0.93998 0.98992 0.82443 0.90011 1.23039 0.93393 0.99400 1.01629 1.21205 0.94680 0.88159 0.90583 1.44354 1.32193 1.26455 1.30058 1.19108 1.10996 1.04101 1.01564 0.90240 1.24826 0.98153 0.97877 0.99531 1.69954 1.22666 1.23933 1.40379 0.86007 0.78204 0.79146 0.82177 1.20450 1.21677 1.21666 1.21917 0.91831 0.93463 0.93408 1.21429 0.95222 1.08239 0.98008 1.20803 0.93377 0.95799 0.97418 0.94172 0.89685 0.94116 0.92661 0.92708 0.85690 0.85198 0.91379 0.91117 0.93039 0.93209 0.93659 0.95209 0.93911 0.84636 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.34 10.69 -35.23 -0.38 -4.71 16 3 C 0.11 1.10 6.06 36.01 0.22 1.32 16 4 C -0.14 -1.77 5.51 -104.60 -0.58 -2.35 16 5 C -0.06 -0.73 9.69 -39.61 -0.38 -1.11 16 6 C -0.16 -2.20 9.99 -39.43 -0.39 -2.60 16 7 C 0.15 2.36 6.68 -39.21 -0.26 2.10 16 8 O -0.30 -5.35 9.95 -19.40 -0.19 -5.54 16 9 C 0.06 1.18 2.81 -24.58 -0.07 1.11 16 10 H 0.08 1.48 6.22 -51.93 -0.32 1.15 16 11 C -0.14 -2.63 6.69 -24.90 -0.17 -2.79 16 12 C 0.18 4.33 5.37 -3.06 -0.02 4.31 16 13 N -0.60 -15.52 3.39 -170.07 -0.58 -16.10 16 14 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 17 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 18 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.12 2.58 6.86 -2.53 -0.02 2.57 16 23 C -0.21 -3.15 8.95 -39.43 -0.35 -3.50 16 24 C -0.06 -0.73 9.69 -39.61 -0.38 -1.12 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.05 1.36 7.38 -51.93 -0.38 0.97 16 35 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.88 7.82 -51.93 -0.41 0.48 16 39 H 0.14 2.08 5.67 -52.48 -0.30 1.79 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -31.07 330.22 -8.15 -39.23 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.99 Total: -0.89 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.54 Total: -7.60 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.01 Total: -42.45 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.57 Total: -10.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.07 -8.15 -39.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227673925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.532 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds