Wall clock time and date at job start Mon Mar 30 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00087 * 2 1 4 4 C 1.50704 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.93999 * 90.00742 * 4 3 2 6 6 C 1.38147 * 120.05547 * 180.02562 * 5 4 3 7 7 C 1.38731 * 119.94447 * 359.97438 * 6 5 4 8 8 O 1.35893 * 120.05879 * 180.02562 * 7 6 5 9 9 C 1.42904 * 117.00192 * 185.51773 * 8 7 6 10 10 H 1.08991 * 110.91612 * 32.39460 * 9 8 7 11 11 C 1.55153 * 111.00348 * 156.30208 * 9 8 7 12 12 C 1.54324 * 102.94187 * 153.57549 * 11 9 8 13 13 N 1.47024 * 107.26974 * 337.80265 * 12 11 9 14 14 C 1.36937 * 125.64738 * 178.95930 * 13 12 11 15 15 H 1.08001 * 120.00061 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00097 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47358 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47556 * 119.99600 * 18 16 14 21 21 H 1.48500 * 109.47177 * 239.99389 * 18 16 14 22 22 C 1.47423 * 108.70593 * 358.94239 * 13 12 11 23 23 C 1.38739 * 119.88354 * 0.28558 * 7 6 5 24 24 C 1.38142 * 119.94476 * 359.46455 * 23 7 6 25 25 H 1.08995 * 109.47184 * 59.99336 * 1 2 3 26 26 H 1.09000 * 109.46790 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46484 * 299.98849 * 1 2 3 28 28 H 1.08994 * 109.46683 * 60.00700 * 3 2 1 29 29 H 1.08997 * 109.47377 * 300.00550 * 3 2 1 30 30 H 1.07998 * 119.97769 * 359.97026 * 5 4 3 31 31 H 1.08001 * 120.02885 * 179.97438 * 6 5 4 32 32 H 1.08995 * 110.72022 * 271.93466 * 11 9 8 33 33 H 1.08996 * 110.72840 * 35.03683 * 11 9 8 34 34 H 1.08996 * 109.88626 * 97.21961 * 12 11 9 35 35 H 1.09003 * 109.88651 * 218.38989 * 12 11 9 36 36 H 0.96998 * 119.99965 * 180.02562 * 17 16 14 37 37 H 1.09003 * 110.36601 * 265.29084 * 22 13 12 38 38 H 1.08994 * 110.36741 * 142.96137 * 22 13 12 39 39 H 1.08004 * 120.02228 * 179.71948 * 23 7 6 40 40 H 1.08000 * 119.96814 * 180.23255 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2000 1.1322 -1.1990 6 6 5.5771 1.0226 -1.2024 7 6 6.2704 0.9673 -0.0020 8 8 7.6250 0.8599 -0.0026 9 6 8.2627 0.6863 1.2645 10 1 7.6270 0.1207 1.9457 11 6 9.6474 0.0056 1.1015 12 6 10.4261 0.5064 2.3362 13 7 9.7792 1.7475 2.7863 14 6 10.1560 2.4966 3.8690 15 1 9.6138 3.3970 4.1177 16 6 11.2348 2.0988 4.6467 17 7 11.8952 1.0014 4.3438 18 14 11.7492 3.1211 6.1231 19 1 10.8521 4.2980 6.2471 20 1 11.6560 2.2953 7.3538 21 1 13.1488 3.5830 5.9419 22 6 8.6580 2.0523 1.8790 23 6 5.5777 1.0164 1.1992 24 6 4.2011 1.1313 1.1971 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 1.6887 1.8462 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.6600 1.1748 -2.1333 31 1 6.1136 0.9799 -2.1387 32 1 9.5484 -1.0797 1.1222 33 1 10.1306 0.3299 0.1799 34 1 10.3856 -0.2411 3.1284 35 1 11.4628 0.7061 2.0648 36 1 12.6488 0.7232 4.8875 37 1 8.9788 2.7412 1.0975 38 1 7.8219 2.4733 2.4372 39 1 6.1148 0.9690 2.1350 40 1 3.6618 1.1733 2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227673925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:45 Heat of formation + Delta-G solvation = -46.169006 kcal Electronic energy + Delta-G solvation = -20944.340941 eV Core-core repulsion = 17724.720561 eV Total energy + Delta-G solvation = -3219.620380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34776 -39.64377 -38.51811 -37.50478 -34.35024 -32.26866 -31.98791 -31.11403 -29.17953 -27.84800 -26.62087 -25.83152 -24.04649 -22.65411 -22.04780 -21.45214 -19.35678 -19.01854 -17.32427 -17.19888 -17.02437 -16.75801 -16.50126 -16.23502 -15.69318 -15.43791 -15.35126 -14.52453 -14.46336 -14.30491 -14.03240 -13.96191 -13.54751 -13.11032 -13.01609 -12.91173 -12.72697 -12.49059 -12.19572 -12.07448 -12.00932 -11.95729 -11.86442 -11.50032 -11.45107 -10.76217 -10.59832 -9.96037 -9.14521 -8.98026 -7.89685 -5.27310 0.34051 0.39529 1.45782 1.46854 1.57416 2.10757 2.48488 2.60582 3.24218 3.29560 3.59570 3.64909 3.84085 3.89700 3.92841 3.98165 4.07879 4.25509 4.36120 4.44654 4.48559 4.57289 4.59122 4.62183 4.68744 4.78377 4.80965 4.90627 4.92078 4.98864 5.08445 5.30869 5.39205 5.42221 5.55966 5.61869 5.67657 5.83258 6.12362 6.26656 6.45694 7.03980 7.68492 8.32489 9.21048 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.003327 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.021231 B = 8412.951158 C = 9001.811728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.109 3.891 4 C -0.143 4.143 5 C -0.058 4.058 6 C -0.164 4.164 7 C 0.119 3.881 8 O -0.311 6.311 9 C 0.083 3.917 10 H 0.088 0.912 11 C -0.124 4.124 12 C 0.186 3.814 13 N -0.623 5.623 14 C -0.247 4.247 15 H 0.083 0.917 16 C -0.063 4.063 17 N -0.950 5.950 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.120 3.880 23 C -0.223 4.223 24 C -0.064 4.064 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.017 0.983 36 H 0.250 0.750 37 H 0.025 0.975 38 H 0.048 0.952 39 H 0.124 0.876 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.148 -0.886 -10.905 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.033 3.967 4 C -0.143 4.143 5 C -0.076 4.076 6 C -0.182 4.182 7 C 0.073 3.927 8 O -0.224 6.224 9 C 0.026 3.974 10 H 0.105 0.895 11 C -0.162 4.162 12 C 0.061 3.939 13 N -0.351 5.351 14 C -0.375 4.375 15 H 0.101 0.899 16 C -0.257 4.257 17 N -0.599 5.599 18 Si 0.810 3.190 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.218 1.218 22 C -0.006 4.006 23 C -0.241 4.241 24 C -0.082 4.082 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.764 -1.040 -10.917 23.482 hybrid contribution 0.682 0.590 1.231 1.526 sum -20.082 -0.450 -9.686 22.301 Atomic orbital electron populations 1.22931 0.79459 1.03689 1.01067 1.87948 1.21395 1.28497 1.95630 1.21328 0.88341 0.84771 1.02214 1.19752 0.95352 1.05945 0.93249 1.21123 0.92456 0.95325 0.98674 1.20670 0.94413 1.06975 0.96186 1.19452 0.82448 0.95629 0.95125 1.86067 1.17390 1.86910 1.32052 1.23492 0.93871 0.96833 0.83203 0.89453 1.22866 0.93127 1.00836 0.99338 1.20946 0.93896 0.87261 0.91750 1.44631 1.33530 1.26707 1.30258 1.19485 1.11171 1.04538 1.02330 0.89884 1.25699 0.98343 0.99181 1.02433 1.70162 1.22939 1.25412 1.41368 0.84952 0.77599 0.77938 0.78462 1.18983 1.21606 1.21792 1.21995 0.90665 0.95223 0.92719 1.21428 0.96137 1.09191 0.97376 1.21038 0.92753 0.95617 0.98780 0.92678 0.88962 0.93154 0.91498 0.90572 0.82638 0.83868 0.88873 0.90262 0.95842 0.96506 0.94115 0.95708 0.93406 0.85800 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.18 10.69 -148.98 -1.59 -9.78 16 3 C 0.11 1.83 6.06 71.24 0.43 2.26 16 4 C -0.14 -3.13 5.51 -19.85 -0.11 -3.24 16 5 C -0.06 -1.22 9.69 22.25 0.22 -1.00 16 6 C -0.16 -4.12 9.99 22.37 0.22 -3.90 16 7 C 0.12 3.63 6.68 22.51 0.15 3.78 16 8 O -0.31 -10.72 9.95 -92.35 -0.92 -11.64 16 9 C 0.08 3.09 2.81 31.99 0.09 3.18 16 10 H 0.09 3.15 6.22 -2.39 -0.01 3.14 16 11 C -0.12 -4.75 6.69 31.78 0.21 -4.54 16 12 C 0.19 9.36 5.37 86.73 0.47 9.82 16 13 N -0.62 -32.90 3.39 -691.97 -2.35 -35.25 16 14 C -0.25 -14.02 10.28 84.03 0.86 -13.16 16 15 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 16 C -0.06 -3.63 5.49 84.86 0.47 -3.16 16 17 N -0.95 -57.19 10.31 21.65 0.22 -56.97 16 18 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 C 0.12 5.20 6.86 86.86 0.60 5.79 16 23 C -0.22 -6.54 8.95 22.37 0.20 -6.34 16 24 C -0.06 -1.58 9.69 22.25 0.22 -1.37 16 25 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 30 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.02 1.29 7.38 -2.39 -0.02 1.27 16 35 H 0.02 0.94 7.51 -2.39 -0.02 0.92 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 2.00 7.82 -2.39 -0.02 1.98 16 39 H 0.12 3.84 5.67 -2.91 -0.02 3.83 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -67.85 330.22 3.68 -64.18 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.02 Total: 11.95 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.27 Total: -10.34 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -2.13 Total: -92.22 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -2.51 Total: -21.41 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -67.85 3.68 -64.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227673925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.007 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds