Wall clock time and date at job start Mon Mar 30 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00285 * 2 1 4 4 C 1.50688 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.94669 * 90.00025 * 4 3 2 6 6 C 1.38146 * 120.05851 * 179.97438 * 5 4 3 7 7 C 1.38735 * 119.94289 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05443 * 180.02562 * 7 6 5 9 9 C 1.42900 * 117.00283 * 2.20054 * 8 7 6 10 10 H 1.09001 * 110.64371 * 321.20800 * 9 8 7 11 11 C 1.55160 * 110.72346 * 197.86931 * 9 8 7 12 12 C 1.55127 * 101.48538 * 205.97368 * 11 9 8 13 13 N 1.47422 * 104.72473 * 37.29334 * 12 11 9 14 14 C 1.36939 * 125.64865 * 155.81640 * 13 12 11 15 15 H 1.08003 * 120.00123 * 190.35455 * 14 13 12 16 16 C 1.38818 * 119.99784 * 10.35141 * 14 13 12 17 17 N 1.31613 * 120.00018 * 8.96125 * 16 14 13 18 18 Si 1.86798 * 119.99765 * 188.95510 * 16 14 13 19 19 H 1.48498 * 109.47204 * 265.01055 * 18 16 14 20 20 H 1.48500 * 109.46960 * 145.01112 * 18 16 14 21 21 H 1.48504 * 109.47178 * 25.01262 * 18 16 14 22 22 C 1.47017 * 108.70426 * 335.55684 * 13 12 11 23 23 C 1.38734 * 119.88893 * 0.27618 * 7 6 5 24 24 C 1.38148 * 119.94038 * 359.42582 * 23 7 6 25 25 H 1.08995 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47073 * 300.00234 * 1 2 3 27 27 H 1.09002 * 109.46996 * 59.99930 * 1 2 3 28 28 H 1.09001 * 109.46536 * 59.99844 * 3 2 1 29 29 H 1.09000 * 109.46984 * 300.00246 * 3 2 1 30 30 H 1.08005 * 119.97454 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.02781 * 179.97438 * 6 5 4 32 32 H 1.08998 * 111.00241 * 324.21282 * 11 9 8 33 33 H 1.09000 * 111.00310 * 88.02632 * 11 9 8 34 34 H 1.09003 * 110.49791 * 278.45455 * 12 11 9 35 35 H 1.09005 * 110.34461 * 156.06231 * 12 11 9 36 36 H 0.96996 * 120.00384 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.88783 * 120.70280 * 22 13 12 38 38 H 1.09006 * 109.88104 * 241.71313 * 22 13 12 39 39 H 1.07996 * 120.02423 * 179.72325 * 23 7 6 40 40 H 1.07999 * 119.96904 * 180.27419 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2010 1.1316 -1.1971 6 6 5.5782 1.0230 -1.1992 7 6 6.2704 0.9693 0.0019 8 8 7.6252 0.8630 0.0024 9 6 8.2763 0.8601 -1.2696 10 1 7.6965 0.2918 -1.9968 11 6 9.7164 0.2955 -1.1480 12 6 10.4197 0.9819 -2.3483 13 7 9.8374 2.3353 -2.3998 14 6 10.4309 3.4390 -2.9519 15 1 10.0025 4.4179 -2.7950 16 6 11.5833 3.2995 -3.7133 17 7 12.0067 2.1005 -4.0527 18 14 12.5328 4.8138 -4.2563 19 1 12.1023 5.2043 -5.6229 20 1 13.9864 4.5105 -4.2630 21 1 12.2644 5.9304 -3.3148 22 6 8.5114 2.3024 -1.7658 23 6 5.5769 1.0192 1.2024 24 6 4.2002 1.1341 1.1990 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6617 1.1738 -2.1320 31 1 6.1155 0.9798 -2.1351 32 1 10.1729 0.5898 -0.2030 33 1 9.7219 -0.7886 -1.2613 34 1 10.2100 0.4433 -3.2725 35 1 11.4947 1.0376 -2.1763 36 1 12.8121 2.0030 -4.5843 37 1 8.4862 2.9932 -0.9230 38 1 7.7463 2.5763 -2.4923 39 1 6.1132 0.9731 2.1386 40 1 3.6601 1.1774 2.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227673927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:48 Heat of formation + Delta-G solvation = -28.610202 kcal Electronic energy + Delta-G solvation = -20940.067161 eV Core-core repulsion = 17721.208188 eV Total energy + Delta-G solvation = -3218.858973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16599 -38.54536 -37.38849 -36.03781 -32.41196 -31.17053 -30.96354 -29.27792 -27.54258 -27.05827 -25.27426 -24.41669 -22.88121 -21.46416 -20.31781 -19.99474 -18.02670 -17.02665 -16.59965 -16.19974 -16.11968 -15.43150 -15.11885 -14.74462 -14.43039 -14.04147 -13.83908 -13.49671 -13.35454 -12.94602 -12.50058 -12.33004 -12.20386 -11.86401 -11.75086 -11.61365 -11.23282 -10.96047 -10.89999 -10.75936 -10.45212 -10.24913 -10.05028 -9.93441 -9.85317 -9.73793 -8.93939 -8.64300 -8.00458 -6.86846 -5.79499 -3.13074 1.38286 1.42147 3.37651 3.42669 3.44821 3.48965 3.50249 4.06501 4.46497 4.74785 4.77087 4.93688 5.03156 5.08010 5.11919 5.18127 5.23355 5.28722 5.38415 5.41382 5.43142 5.54580 5.59180 5.67670 5.80331 6.05270 6.19946 6.29944 6.33897 6.43909 6.47051 6.58708 6.59414 6.63221 6.88271 6.92920 7.40593 7.49395 7.68456 7.76057 8.19725 9.13774 9.75000 10.41191 11.33818 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034408 B = 0.003197 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.561419 B = 8756.711451 C = 9085.726414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.110 3.890 4 C -0.145 4.145 5 C -0.056 4.056 6 C -0.211 4.211 7 C 0.150 3.850 8 O -0.304 6.304 9 C 0.069 3.931 10 H 0.078 0.922 11 C -0.136 4.136 12 C 0.174 3.826 13 N -0.600 5.600 14 C -0.230 4.230 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.118 3.882 23 C -0.162 4.162 24 C -0.060 4.060 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.254 0.746 37 H 0.034 0.966 38 H 0.026 0.974 39 H 0.130 0.870 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.762 -4.118 8.691 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.034 3.966 4 C -0.145 4.145 5 C -0.074 4.074 6 C -0.229 4.229 7 C 0.104 3.896 8 O -0.216 6.216 9 C 0.013 3.987 10 H 0.096 0.904 11 C -0.175 4.175 12 C 0.049 3.951 13 N -0.327 5.327 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.008 4.008 23 C -0.181 4.181 24 C -0.079 4.079 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.148 0.852 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.321 -4.247 8.722 20.730 hybrid contribution 0.190 1.006 -0.647 1.211 sum -18.130 -3.241 8.075 20.110 Atomic orbital electron populations 1.22741 0.81339 1.02709 0.99869 1.88002 1.19290 1.27919 1.95361 1.21254 0.90067 0.84716 1.00553 1.19356 0.93706 1.07861 0.93579 1.20796 0.93353 0.95840 0.97412 1.21396 0.95188 1.08427 0.97909 1.19163 0.83336 0.93168 0.93931 1.86158 1.15827 1.86657 1.32995 1.23662 0.93996 0.98396 0.82662 0.90371 1.23213 0.92428 0.99564 1.02273 1.21503 0.98046 0.83940 0.91619 1.44364 1.13306 1.06845 1.68214 1.19030 1.06460 0.85606 1.24745 0.90540 1.24842 0.99436 0.96955 0.99054 1.69927 1.25035 1.20277 1.41376 0.86088 0.79330 0.81861 0.78410 1.21549 1.21522 1.20521 1.21729 0.89673 0.93265 0.96159 1.20402 0.93668 1.07546 0.96468 1.20752 0.93040 0.96681 0.97383 0.89690 0.94167 0.94119 0.92692 0.92656 0.85940 0.84780 0.90751 0.91308 0.95045 0.90489 0.93566 0.94763 0.95569 0.85180 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.32 10.69 -35.23 -0.38 -4.69 16 3 C 0.11 1.10 6.06 36.00 0.22 1.32 16 4 C -0.14 -1.78 5.51 -104.61 -0.58 -2.35 16 5 C -0.06 -0.73 9.69 -39.61 -0.38 -1.11 16 6 C -0.21 -3.13 8.89 -39.43 -0.35 -3.48 16 7 C 0.15 2.38 6.61 -39.21 -0.26 2.12 16 8 O -0.30 -5.39 9.88 -19.41 -0.19 -5.58 16 9 C 0.07 1.28 2.79 -24.89 -0.07 1.21 16 10 H 0.08 1.35 6.25 -51.93 -0.32 1.03 16 11 C -0.14 -2.62 6.82 -24.46 -0.17 -2.78 16 12 C 0.17 4.18 5.43 -2.41 -0.01 4.17 16 13 N -0.60 -15.56 3.39 -169.93 -0.58 -16.13 16 14 C -0.23 -6.48 10.24 -15.06 -0.15 -6.63 16 15 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 16 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 17 N -0.92 -26.80 10.67 55.49 0.59 -26.21 16 18 Si 0.91 22.03 29.56 -169.99 -5.03 17.00 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.12 2.56 6.66 -3.06 -0.02 2.54 16 23 C -0.16 -2.23 9.99 -39.43 -0.39 -2.62 16 24 C -0.06 -0.73 9.69 -39.60 -0.38 -1.11 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.13 2.00 5.63 -52.49 -0.30 1.71 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.08 2.04 6.94 -51.93 -0.36 1.68 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 38 H 0.03 0.56 7.88 -51.93 -0.41 0.16 16 39 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -31.24 330.33 -8.13 -39.37 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.00 Total: -1.07 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.54 Total: -7.68 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.02 Total: -42.34 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.57 Total: -10.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.24 -8.13 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227673927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.764 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds