Wall clock time and date at job start Mon Mar 30 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00285 * 2 1 4 4 C 1.50688 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.94669 * 90.00025 * 4 3 2 6 6 C 1.38146 * 120.05851 * 179.97438 * 5 4 3 7 7 C 1.38735 * 119.94289 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05443 * 180.02562 * 7 6 5 9 9 C 1.42900 * 117.00283 * 2.20054 * 8 7 6 10 10 H 1.09001 * 110.64371 * 321.20800 * 9 8 7 11 11 C 1.55160 * 110.72346 * 197.86931 * 9 8 7 12 12 C 1.55127 * 101.48538 * 205.97368 * 11 9 8 13 13 N 1.47422 * 104.72473 * 37.29334 * 12 11 9 14 14 C 1.36939 * 125.64865 * 155.81640 * 13 12 11 15 15 H 1.08003 * 120.00123 * 190.35455 * 14 13 12 16 16 C 1.38818 * 119.99784 * 10.35141 * 14 13 12 17 17 N 1.31613 * 120.00018 * 8.96125 * 16 14 13 18 18 Si 1.86798 * 119.99765 * 188.95510 * 16 14 13 19 19 H 1.48498 * 109.47204 * 265.01055 * 18 16 14 20 20 H 1.48500 * 109.46960 * 145.01112 * 18 16 14 21 21 H 1.48504 * 109.47178 * 25.01262 * 18 16 14 22 22 C 1.47017 * 108.70426 * 335.55684 * 13 12 11 23 23 C 1.38734 * 119.88893 * 0.27618 * 7 6 5 24 24 C 1.38148 * 119.94038 * 359.42582 * 23 7 6 25 25 H 1.08995 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47073 * 300.00234 * 1 2 3 27 27 H 1.09002 * 109.46996 * 59.99930 * 1 2 3 28 28 H 1.09001 * 109.46536 * 59.99844 * 3 2 1 29 29 H 1.09000 * 109.46984 * 300.00246 * 3 2 1 30 30 H 1.08005 * 119.97454 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.02781 * 179.97438 * 6 5 4 32 32 H 1.08998 * 111.00241 * 324.21282 * 11 9 8 33 33 H 1.09000 * 111.00310 * 88.02632 * 11 9 8 34 34 H 1.09003 * 110.49791 * 278.45455 * 12 11 9 35 35 H 1.09005 * 110.34461 * 156.06231 * 12 11 9 36 36 H 0.96996 * 120.00384 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.88783 * 120.70280 * 22 13 12 38 38 H 1.09006 * 109.88104 * 241.71313 * 22 13 12 39 39 H 1.07996 * 120.02423 * 179.72325 * 23 7 6 40 40 H 1.07999 * 119.96904 * 180.27419 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2010 1.1316 -1.1971 6 6 5.5782 1.0230 -1.1992 7 6 6.2704 0.9693 0.0019 8 8 7.6252 0.8630 0.0024 9 6 8.2763 0.8601 -1.2696 10 1 7.6965 0.2918 -1.9968 11 6 9.7164 0.2955 -1.1480 12 6 10.4197 0.9819 -2.3483 13 7 9.8374 2.3353 -2.3998 14 6 10.4309 3.4390 -2.9519 15 1 10.0025 4.4179 -2.7950 16 6 11.5833 3.2995 -3.7133 17 7 12.0067 2.1005 -4.0527 18 14 12.5328 4.8138 -4.2563 19 1 12.1023 5.2043 -5.6229 20 1 13.9864 4.5105 -4.2630 21 1 12.2644 5.9304 -3.3148 22 6 8.5114 2.3024 -1.7658 23 6 5.5769 1.0192 1.2024 24 6 4.2002 1.1341 1.1990 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6617 1.1738 -2.1320 31 1 6.1155 0.9798 -2.1351 32 1 10.1729 0.5898 -0.2030 33 1 9.7219 -0.7886 -1.2613 34 1 10.2100 0.4433 -3.2725 35 1 11.4947 1.0376 -2.1763 36 1 12.8121 2.0030 -4.5843 37 1 8.4862 2.9932 -0.9230 38 1 7.7463 2.5763 -2.4923 39 1 6.1132 0.9731 2.1386 40 1 3.6601 1.1774 2.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227673927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:47 Heat of formation + Delta-G solvation = -47.246994 kcal Electronic energy + Delta-G solvation = -20940.875313 eV Core-core repulsion = 17721.208188 eV Total energy + Delta-G solvation = -3219.667125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37481 -39.65047 -38.50408 -37.48934 -34.35552 -32.27555 -31.99112 -31.10276 -29.19401 -27.86235 -26.62246 -25.82891 -24.03105 -22.66060 -22.14945 -21.38909 -19.29148 -18.99575 -17.34763 -17.22177 -17.02973 -16.80559 -16.70423 -16.22422 -15.58241 -15.41846 -15.31162 -14.60510 -14.44160 -14.36044 -14.17700 -13.67773 -13.53251 -13.15526 -13.04306 -12.81768 -12.70206 -12.51973 -12.32284 -12.08132 -12.04725 -11.96448 -11.80380 -11.59775 -11.43115 -10.74563 -10.60034 -9.96369 -9.14115 -8.94187 -7.93307 -5.29765 0.34010 0.39356 1.45370 1.46921 1.56916 2.13458 2.47665 2.59885 3.23869 3.27016 3.56140 3.64097 3.83687 3.88664 3.90313 3.97398 4.09174 4.25033 4.36285 4.45939 4.49010 4.56788 4.59152 4.62221 4.65893 4.78616 4.83780 4.90578 4.93258 4.97150 5.08123 5.30241 5.37633 5.41521 5.50728 5.61417 5.63626 5.83236 6.13713 6.26323 6.45362 7.01987 7.67333 8.33255 9.18810 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034408 B = 0.003197 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.561419 B = 8756.711451 C = 9085.726414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.109 3.891 4 C -0.143 4.143 5 C -0.063 4.063 6 C -0.222 4.222 7 C 0.118 3.882 8 O -0.313 6.313 9 C 0.086 3.914 10 H 0.092 0.908 11 C -0.122 4.122 12 C 0.179 3.821 13 N -0.622 5.622 14 C -0.251 4.251 15 H 0.077 0.923 16 C -0.059 4.059 17 N -0.946 5.946 18 Si 0.981 3.019 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.270 1.270 22 C 0.118 3.882 23 C -0.166 4.166 24 C -0.058 4.058 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.011 0.989 35 H 0.045 0.955 36 H 0.252 0.748 37 H 0.026 0.974 38 H 0.028 0.972 39 H 0.142 0.858 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.876 -3.879 9.710 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.034 3.966 4 C -0.144 4.144 5 C -0.081 4.081 6 C -0.241 4.241 7 C 0.073 3.927 8 O -0.226 6.226 9 C 0.030 3.970 10 H 0.110 0.890 11 C -0.160 4.160 12 C 0.054 3.946 13 N -0.350 5.350 14 C -0.379 4.379 15 H 0.095 0.905 16 C -0.253 4.253 17 N -0.594 5.594 18 Si 0.808 3.192 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.195 1.195 22 C -0.007 4.007 23 C -0.184 4.184 24 C -0.076 4.076 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.159 0.841 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.475 -4.007 9.760 23.033 hybrid contribution 0.675 0.932 -0.919 1.473 sum -19.800 -3.075 8.841 21.901 Atomic orbital electron populations 1.22931 0.79458 1.03707 1.01056 1.87945 1.21392 1.28459 1.95628 1.21320 0.88335 0.84781 1.02195 1.19752 0.95357 1.05985 0.93262 1.21050 0.92758 0.95562 0.98779 1.21427 0.96096 1.09201 0.97345 1.19455 0.82507 0.95538 0.95184 1.86112 1.17207 1.87449 1.31832 1.23333 0.93992 0.96063 0.83631 0.89011 1.23032 0.92220 1.00908 0.99852 1.21295 0.96758 0.83711 0.92836 1.44655 1.15127 1.06967 1.68208 1.19372 1.07071 0.86530 1.24961 0.90547 1.25690 1.00280 0.99902 0.99399 1.70111 1.25199 1.22163 1.41918 0.85041 0.77506 0.78584 0.78031 1.21070 1.21552 1.19514 1.21798 0.87852 0.95562 0.95524 1.20663 0.94501 1.07046 0.96207 1.21118 0.92438 0.95345 0.98702 0.88909 0.92740 0.93136 0.90668 0.91462 0.84310 0.85576 0.90700 0.88226 0.97090 0.93611 0.93915 0.95569 0.95455 0.84053 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.14 10.69 -148.98 -1.59 -9.73 16 3 C 0.11 1.85 6.06 71.23 0.43 2.28 16 4 C -0.14 -3.17 5.51 -19.85 -0.11 -3.28 16 5 C -0.06 -1.56 9.69 22.25 0.22 -1.35 16 6 C -0.22 -6.46 8.89 22.37 0.20 -6.27 16 7 C 0.12 3.66 6.61 22.51 0.15 3.80 16 8 O -0.31 -10.91 9.88 -92.38 -0.91 -11.83 16 9 C 0.09 3.19 2.79 31.79 0.09 3.28 16 10 H 0.09 3.14 6.25 -2.39 -0.01 3.12 16 11 C -0.12 -4.64 6.82 32.06 0.22 -4.43 16 12 C 0.18 8.85 5.43 86.93 0.47 9.32 16 13 N -0.62 -33.06 3.39 -691.54 -2.35 -35.41 16 14 C -0.25 -14.40 10.24 84.03 0.86 -13.54 16 15 H 0.08 4.26 7.84 -2.91 -0.02 4.23 16 16 C -0.06 -3.37 5.40 84.86 0.46 -2.91 16 17 N -0.95 -56.60 10.67 21.65 0.23 -56.36 16 18 Si 0.98 45.82 29.56 68.60 2.03 47.85 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 C 0.12 5.22 6.66 86.73 0.58 5.80 16 23 C -0.17 -4.27 9.99 22.37 0.22 -4.05 16 24 C -0.06 -1.25 9.69 22.26 0.22 -1.04 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 29 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.13 3.77 5.63 -2.91 -0.02 3.76 16 32 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.01 0.58 8.07 -2.39 -0.02 0.56 16 35 H 0.05 2.52 6.94 -2.38 -0.02 2.50 16 36 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 38 H 0.03 1.20 7.88 -2.38 -0.02 1.18 16 39 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -68.04 330.33 3.67 -64.36 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.02 Total: 11.96 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.25 Total: -10.84 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -2.12 Total: -91.77 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -2.50 Total: -21.56 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -68.04 3.67 -64.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227673927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.117 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds