Wall clock time and date at job start Mon Mar 30 2020 02:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42901 * 113.99900 * 2 1 4 4 C 1.50696 * 109.46839 * 180.02562 * 3 2 1 5 5 C 1.38269 * 119.94702 * 89.99605 * 4 3 2 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47137 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47320 * 299.99947 * 17 15 13 20 20 H 1.48502 * 109.47213 * 59.99788 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08997 * 109.47018 * 300.00342 * 1 2 3 25 25 H 1.09004 * 109.46824 * 60.00192 * 1 2 3 26 26 H 1.08991 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47192 * 59.99960 * 3 2 1 28 28 H 1.09002 * 109.46872 * 299.99591 * 3 2 1 29 29 H 1.07997 * 119.96889 * 359.97438 * 5 4 3 30 30 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 31 31 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 32 32 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 33 33 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 34 34 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 35 35 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 36 36 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 38 38 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 39 39 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 40 40 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2001 1.1321 -1.1990 6 6 5.5773 1.0235 -1.2022 7 6 6.2705 0.9684 -0.0017 8 8 7.6253 0.8621 -0.0022 9 6 8.2815 0.9386 -1.2694 10 6 9.7520 1.3726 -1.1904 11 7 10.1059 -0.0477 -1.0104 12 6 11.3049 -0.3938 -1.7855 13 6 11.7781 -1.7692 -1.3914 14 1 11.2422 -2.3299 -0.6400 15 6 12.8960 -2.3112 -1.9894 16 7 13.5489 -1.6282 -2.9040 17 14 13.4830 -4.0158 -1.5004 18 1 14.6950 -4.3657 -2.2840 19 1 13.8084 -4.0306 -0.0516 20 1 12.4120 -5.0066 -1.7772 21 6 8.8790 -0.3899 -1.7537 22 6 5.5778 1.0170 1.1994 23 6 4.2010 1.1309 1.1972 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.6601 1.1745 -2.1333 30 1 6.1139 0.9806 -2.1384 31 1 7.6998 1.4679 -2.0240 32 1 9.9764 1.9897 -0.3205 33 1 10.1290 1.7997 -2.1197 34 1 12.0912 0.3331 -1.5823 35 1 11.0657 -0.3827 -2.8489 36 1 14.3356 -2.0093 -3.3245 37 1 9.0232 -0.4332 -2.8333 38 1 8.3637 -1.2665 -1.3611 39 1 6.1147 0.9699 2.1352 40 1 3.6616 1.1725 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227675398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:41 Heat of formation + Delta-G solvation = -10.465076 kcal Electronic energy + Delta-G solvation = -20481.352979 eV Core-core repulsion = 17263.280837 eV Total energy + Delta-G solvation = -3218.072141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49824 -39.18369 -37.94840 -36.49641 -32.88160 -31.34453 -31.07517 -29.26690 -27.21416 -25.68031 -25.46173 -24.99557 -23.14976 -21.77439 -21.26846 -19.49610 -18.00902 -16.65581 -16.41511 -16.30016 -16.17897 -15.51917 -15.44734 -14.84400 -14.52687 -14.45404 -13.96615 -13.61700 -13.47325 -13.30734 -12.97990 -12.41613 -12.38268 -11.97708 -11.88391 -11.70226 -11.41819 -11.29300 -10.92875 -10.79678 -10.49559 -10.34077 -10.05261 -9.98613 -9.67505 -9.28240 -9.04840 -8.43361 -8.11081 -7.86903 -6.03805 -4.04824 1.26941 1.31503 3.22692 3.35106 3.38067 3.41006 3.42454 3.98128 4.42870 4.61216 4.68604 4.71718 4.78127 4.82990 4.97043 5.00819 5.07363 5.08709 5.18848 5.31282 5.32018 5.35339 5.43852 5.62788 5.79983 5.85687 5.94949 6.05143 6.14251 6.21287 6.31309 6.35741 6.49588 6.59823 6.75319 6.86129 7.12556 7.58672 7.63454 7.84975 8.08784 8.44689 9.02696 9.59359 11.07278 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.002862 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.213694 B = 9782.551404 C =10165.611633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.110 3.890 4 C -0.144 4.144 5 C -0.056 4.056 6 C -0.214 4.214 7 C 0.148 3.852 8 O -0.275 6.275 9 C 0.043 3.957 10 C 0.000 4.000 11 N -0.456 5.456 12 C 0.156 3.844 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.006 4.006 22 C -0.158 4.158 23 C -0.059 4.059 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.711 8.879 3.535 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.034 3.966 4 C -0.144 4.144 5 C -0.075 4.075 6 C -0.233 4.233 7 C 0.102 3.898 8 O -0.187 6.187 9 C -0.014 4.014 10 C -0.129 4.129 11 N -0.179 5.179 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.135 4.135 22 C -0.177 4.177 23 C -0.077 4.077 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.151 0.849 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.117 8.380 4.236 24.951 hybrid contribution 0.213 -0.440 -0.968 1.085 sum -22.904 7.940 3.267 24.461 Atomic orbital electron populations 1.22749 0.81256 1.02808 0.99843 1.88018 1.19353 1.27775 1.95351 1.21251 0.90013 0.84838 1.00519 1.19384 0.93792 1.07657 0.93578 1.20781 0.93311 0.95965 0.97414 1.21309 0.95142 1.09115 0.97722 1.19219 0.83301 0.93286 0.94041 1.86198 1.15498 1.85865 1.31115 1.23733 0.93715 0.99616 0.84304 1.24005 0.91049 0.95907 1.01935 1.69094 1.02681 1.03267 1.42875 1.20304 0.87717 0.97708 0.91255 1.21061 1.10896 1.00442 1.21907 0.91863 1.25005 0.96510 0.98118 0.95097 1.69941 1.19394 1.37872 1.26901 0.86517 0.77961 0.84060 0.78642 1.21340 1.20100 1.20232 1.24249 0.94027 0.97127 0.98138 1.20437 0.93675 1.06963 0.96618 1.20786 0.93001 0.96399 0.97491 0.94131 0.94133 0.89615 0.92659 0.92719 0.85940 0.84928 0.89585 0.89678 0.90413 0.95159 0.97837 0.92854 0.90555 0.89921 0.84934 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.09 10.69 -35.23 -0.38 -4.47 16 3 C 0.11 0.99 6.06 36.00 0.22 1.21 16 4 C -0.14 -1.60 5.51 -104.60 -0.58 -2.17 16 5 C -0.06 -0.64 9.69 -39.60 -0.38 -1.03 16 6 C -0.21 -2.74 9.03 -39.43 -0.36 -3.09 16 7 C 0.15 2.15 6.68 -39.21 -0.26 1.88 16 8 O -0.27 -4.62 10.19 -19.43 -0.20 -4.82 16 9 C 0.04 0.69 4.06 -26.19 -0.11 0.58 16 10 C 0.00 0.01 7.52 -7.54 -0.06 -0.05 16 11 N -0.46 -10.24 6.32 -246.11 -1.55 -11.79 16 12 C 0.16 4.12 4.57 -4.97 -0.02 4.09 16 13 C -0.50 -14.67 9.39 -34.44 -0.32 -14.99 16 14 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 C -0.01 -0.11 7.56 -7.55 -0.06 -0.17 16 22 C -0.16 -2.05 9.99 -39.43 -0.39 -2.44 16 23 C -0.06 -0.66 9.69 -39.60 -0.38 -1.04 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.54 5.89 -52.49 -0.31 1.23 16 31 H 0.09 1.12 5.90 -51.93 -0.31 0.81 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 34 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.40 7.42 -51.93 -0.39 1.01 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -32.68 337.23 -9.00 -41.67 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.98 Total: -2.08 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.69 Total: -14.45 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.82 Total: -38.06 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.57 Total: -9.29 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.68 -9.00 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227675398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.208 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds