Wall clock time and date at job start Mon Mar 30 2020 02:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42901 * 113.99900 * 2 1 4 4 C 1.50696 * 109.46839 * 180.02562 * 3 2 1 5 5 C 1.38269 * 119.94702 * 89.99605 * 4 3 2 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47137 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47320 * 299.99947 * 17 15 13 20 20 H 1.48502 * 109.47213 * 59.99788 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08997 * 109.47018 * 300.00342 * 1 2 3 25 25 H 1.09004 * 109.46824 * 60.00192 * 1 2 3 26 26 H 1.08991 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47192 * 59.99960 * 3 2 1 28 28 H 1.09002 * 109.46872 * 299.99591 * 3 2 1 29 29 H 1.07997 * 119.96889 * 359.97438 * 5 4 3 30 30 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 31 31 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 32 32 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 33 33 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 34 34 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 35 35 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 36 36 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 38 38 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 39 39 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 40 40 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2001 1.1321 -1.1990 6 6 5.5773 1.0235 -1.2022 7 6 6.2705 0.9684 -0.0017 8 8 7.6253 0.8621 -0.0022 9 6 8.2815 0.9386 -1.2694 10 6 9.7520 1.3726 -1.1904 11 7 10.1059 -0.0477 -1.0104 12 6 11.3049 -0.3938 -1.7855 13 6 11.7781 -1.7692 -1.3914 14 1 11.2422 -2.3299 -0.6400 15 6 12.8960 -2.3112 -1.9894 16 7 13.5489 -1.6282 -2.9040 17 14 13.4830 -4.0158 -1.5004 18 1 14.6950 -4.3657 -2.2840 19 1 13.8084 -4.0306 -0.0516 20 1 12.4120 -5.0066 -1.7772 21 6 8.8790 -0.3899 -1.7537 22 6 5.5778 1.0170 1.1994 23 6 4.2010 1.1309 1.1972 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.6601 1.1745 -2.1333 30 1 6.1139 0.9806 -2.1384 31 1 7.6998 1.4679 -2.0240 32 1 9.9764 1.9897 -0.3205 33 1 10.1290 1.7997 -2.1197 34 1 12.0912 0.3331 -1.5823 35 1 11.0657 -0.3827 -2.8489 36 1 14.3356 -2.0093 -3.3245 37 1 9.0232 -0.4332 -2.8333 38 1 8.3637 -1.2665 -1.3611 39 1 6.1147 0.9699 2.1352 40 1 3.6616 1.1725 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227675398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:41 Heat of formation + Delta-G solvation = -33.379441 kcal Electronic energy + Delta-G solvation = -20482.346620 eV Core-core repulsion = 17263.280837 eV Total energy + Delta-G solvation = -3219.065783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74054 -40.31438 -38.83674 -37.57431 -35.03530 -32.32231 -31.97208 -31.05054 -27.92443 -27.37498 -26.87960 -25.92011 -24.42089 -23.23794 -22.45354 -20.75507 -19.17408 -18.54950 -17.34603 -17.29047 -17.06647 -16.95559 -16.45944 -16.34485 -15.84494 -15.66314 -15.21359 -15.05487 -14.62421 -14.37380 -14.15159 -13.90030 -13.64610 -13.20671 -13.13051 -12.92489 -12.75887 -12.46316 -12.39299 -12.28388 -12.06906 -11.83528 -11.50498 -11.41257 -11.26062 -10.63632 -10.59646 -9.95725 -9.62392 -9.12464 -8.25259 -6.35316 0.33791 0.40163 1.37832 1.41125 1.49479 2.06027 2.37604 2.58709 3.06529 3.23696 3.31446 3.31866 3.73402 3.85736 3.95778 4.02348 4.21358 4.33517 4.39043 4.41764 4.46277 4.51094 4.59109 4.59334 4.62001 4.65945 4.76856 4.85654 4.90853 4.91419 5.02042 5.08917 5.30704 5.39922 5.55161 5.62393 5.75435 5.83604 6.05170 6.27336 6.41250 6.50258 6.78004 7.34031 8.85429 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.002862 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.213694 B = 9782.551404 C =10165.611633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.109 3.891 4 C -0.144 4.144 5 C -0.061 4.061 6 C -0.219 4.219 7 C 0.117 3.883 8 O -0.299 6.299 9 C 0.070 3.930 10 C -0.001 4.001 11 N -0.487 5.487 12 C 0.172 3.828 13 C -0.530 4.530 14 H 0.052 0.948 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.271 1.271 20 H -0.269 1.269 21 C -0.010 4.010 22 C -0.170 4.170 23 C -0.060 4.060 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.004 0.996 35 H -0.011 1.011 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.893 8.978 3.569 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.033 3.967 4 C -0.145 4.145 5 C -0.079 4.079 6 C -0.237 4.237 7 C 0.072 3.928 8 O -0.212 6.212 9 C 0.013 3.987 10 C -0.130 4.130 11 N -0.210 5.210 12 C 0.045 3.955 13 C -0.568 4.568 14 H 0.071 0.929 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.194 1.194 21 C -0.139 4.139 22 C -0.189 4.189 23 C -0.078 4.078 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.022 0.978 35 H 0.007 0.993 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.151 0.849 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.329 8.492 4.277 27.055 hybrid contribution 0.744 -0.429 -0.940 1.273 sum -24.586 8.064 3.337 26.088 Atomic orbital electron populations 1.22925 0.79463 1.03630 1.01107 1.87958 1.21401 1.28648 1.95636 1.21343 0.88389 0.84710 1.02270 1.19776 0.95346 1.05987 0.93369 1.21096 0.92877 0.95250 0.98671 1.21457 0.95906 1.08948 0.97401 1.19489 0.82404 0.95561 0.95369 1.86152 1.17111 1.86658 1.31321 1.23480 0.93141 0.97103 0.85005 1.24079 0.92599 0.93472 1.02812 1.68996 1.02281 1.06716 1.43043 1.19969 0.88833 0.95964 0.90718 1.21372 1.11549 1.01838 1.22069 0.92941 1.25892 0.96429 1.02287 0.94853 1.70046 1.19770 1.39658 1.27639 0.85446 0.77783 0.78990 0.78472 1.20226 1.19585 1.19369 1.24283 0.92775 0.98677 0.98171 1.20640 0.94596 1.07251 0.96383 1.21083 0.92327 0.95525 0.98820 0.92816 0.92883 0.89140 0.90900 0.91029 0.83700 0.84050 0.85879 0.89322 0.89015 0.97766 0.99342 0.92476 0.89966 0.91046 0.84861 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.83 10.69 -148.98 -1.59 -9.42 16 3 C 0.11 1.63 6.06 71.23 0.43 2.06 16 4 C -0.14 -2.87 5.51 -19.85 -0.11 -2.98 16 5 C -0.06 -1.25 9.69 22.25 0.22 -1.03 16 6 C -0.22 -5.24 9.03 22.37 0.20 -5.04 16 7 C 0.12 3.32 6.68 22.51 0.15 3.47 16 8 O -0.30 -10.03 10.19 -92.46 -0.94 -10.97 16 9 C 0.07 2.17 4.06 30.94 0.13 2.29 16 10 C 0.00 -0.02 7.52 83.58 0.63 0.61 16 11 N -0.49 -22.41 6.32 -932.93 -5.89 -28.30 16 12 C 0.17 9.39 4.57 85.56 0.39 9.78 16 13 C -0.53 -31.61 9.39 25.60 0.24 -31.37 16 14 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 17 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.01 -0.37 7.56 83.58 0.63 0.26 16 22 C -0.17 -4.29 9.99 22.37 0.22 -4.07 16 23 C -0.06 -1.23 9.69 22.26 0.22 -1.01 16 24 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 28 H 0.07 0.82 8.08 -2.39 -0.02 0.81 16 29 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.14 3.00 5.89 -2.91 -0.02 2.98 16 31 H 0.12 2.93 5.90 -2.39 -0.01 2.92 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.09 3.00 7.91 -2.39 -0.02 2.99 16 34 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 35 H -0.01 -0.63 7.30 -2.39 -0.02 -0.64 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.08 3.03 7.42 -2.38 -0.02 3.01 16 38 H 0.07 2.84 8.14 -2.39 -0.02 2.83 16 39 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -71.32 337.23 -0.04 -71.36 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.02 Total: 10.74 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 5.06 Total: -24.84 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -5.61 Total: -84.55 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -2.53 Total: -20.39 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.32 -0.04 -71.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227675398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.982 kcal (2) G-P(sol) polarization free energy of solvation -71.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds