Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 114.00021 * 2 1 4 4 C 1.50690 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.38173 * 120.03092 * 0.02562 * 4 3 2 6 6 C 1.38238 * 120.06150 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.10918 * 359.97242 * 6 5 4 8 8 C 1.38125 * 120.05618 * 0.02562 * 7 6 5 9 9 C 1.38713 * 120.03318 * 179.72902 * 4 3 2 10 10 O 1.35906 * 120.04905 * 0.02562 * 9 4 3 11 11 C 1.42900 * 116.99817 * 174.19467 * 10 9 4 12 12 H 1.09001 * 110.64140 * 326.95984 * 11 10 9 13 13 C 1.55153 * 110.72117 * 203.81512 * 11 10 9 14 14 C 1.54907 * 101.58465 * 206.13498 * 13 11 10 15 15 N 1.47429 * 104.83005 * 37.01031 * 14 13 11 16 16 C 1.36938 * 125.64834 * 155.91208 * 15 14 13 17 17 H 1.07996 * 120.00042 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99853 * 359.97438 * 16 15 14 19 19 N 1.31617 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99645 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47178 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46787 * 119.99867 * 20 18 16 23 23 H 1.48494 * 109.46829 * 239.99434 * 20 18 16 24 24 C 1.47316 * 108.73674 * 335.71643 * 15 14 13 25 25 H 1.08992 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46594 * 299.99583 * 1 2 3 27 27 H 1.08997 * 109.47265 * 59.99325 * 1 2 3 28 28 H 1.08992 * 109.47519 * 300.00678 * 3 2 1 29 29 H 1.09002 * 109.46431 * 60.00511 * 3 2 1 30 30 H 1.08004 * 119.96889 * 359.97219 * 5 4 3 31 31 H 1.08002 * 119.94774 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.97447 * 180.02562 * 7 6 5 33 33 H 1.08003 * 120.02747 * 179.97438 * 8 7 6 34 34 H 1.09004 * 111.00555 * 324.20841 * 13 11 10 35 35 H 1.08997 * 111.00353 * 88.02268 * 13 11 10 36 36 H 1.09001 * 110.36916 * 155.84697 * 14 13 11 37 37 H 1.08993 * 110.36727 * 278.17607 * 14 13 11 38 38 H 0.96999 * 119.99491 * 180.02562 * 19 18 16 39 39 H 1.09000 * 110.06454 * 241.87526 * 24 15 14 40 40 H 1.09004 * 109.85083 * 120.61246 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1074 -0.0605 -0.0016 6 6 5.4854 -0.1704 -0.0017 7 6 6.2720 0.9670 -0.0013 8 6 5.6823 2.2160 -0.0003 9 6 4.2994 2.3289 -0.0064 10 8 3.7166 3.5567 -0.0110 11 6 4.5830 4.6864 0.1119 12 1 5.4414 4.4459 0.7392 13 6 3.8140 5.9088 0.6791 14 6 4.6403 7.0883 0.1083 15 7 5.0438 6.6487 -1.2398 16 6 5.3705 7.4729 -2.2835 17 1 5.6547 7.0511 -3.2361 18 6 5.3363 8.8506 -2.1169 19 7 4.9893 9.3647 -0.9560 20 14 5.7812 9.9749 -3.5409 21 1 6.1321 9.1548 -4.7281 22 1 4.6225 10.8455 -3.8649 23 1 6.9430 10.8181 -3.1614 24 6 5.0423 5.1761 -1.2777 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8465 -0.8898 29 1 1.6887 1.8463 0.8901 30 1 3.4952 -0.9503 -0.0015 31 1 5.9485 -1.1461 -0.0021 32 1 7.3484 0.8786 -0.0018 33 1 6.2970 3.1040 0.0004 34 1 2.7898 5.9331 0.3068 35 1 3.8315 5.9101 1.7689 36 1 4.0263 7.9867 0.0464 37 1 5.5191 7.2701 0.7269 38 1 4.9651 10.3274 -0.8398 39 1 6.0459 4.8063 -1.4879 40 1 4.3484 4.8262 -2.0420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229255822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = -26.396263 kcal Electronic energy + Delta-G solvation = -21406.909259 eV Core-core repulsion = 18188.146289 eV Total energy + Delta-G solvation = -3218.762969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24292 -38.27889 -37.38386 -36.03348 -32.47959 -31.84356 -29.98857 -29.15511 -27.54535 -27.10728 -25.41835 -24.61557 -22.41664 -21.49009 -20.24211 -19.99408 -17.98931 -17.05165 -16.56161 -16.09456 -15.97291 -15.25667 -15.02022 -14.72727 -14.56704 -14.28193 -13.78933 -13.66715 -12.90004 -12.72912 -12.65472 -12.46958 -11.93689 -11.80551 -11.75054 -11.55525 -11.15017 -11.03060 -10.91479 -10.76762 -10.42446 -10.24833 -10.06144 -9.92505 -9.84692 -9.64018 -8.73010 -8.71421 -7.96295 -6.91812 -5.71552 -3.13775 1.39108 1.55348 3.37136 3.41823 3.44641 3.47870 3.60929 3.83597 4.44902 4.81991 5.03467 5.07266 5.14064 5.18342 5.19393 5.29861 5.37267 5.43235 5.47094 5.48166 5.51983 5.56630 5.59940 5.65736 5.87505 6.07538 6.21634 6.35625 6.39202 6.44849 6.46115 6.57973 6.58139 6.64022 6.95629 7.08282 7.39552 7.56228 7.68092 7.78391 8.27766 9.15185 9.75239 10.38449 11.32909 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003909 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.278533 B = 7160.726662 C = 7663.442324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.115 3.885 4 C -0.130 4.130 5 C -0.063 4.063 6 C -0.168 4.168 7 C -0.080 4.080 8 C -0.207 4.207 9 C 0.145 3.855 10 O -0.304 6.304 11 C 0.069 3.931 12 H 0.078 0.922 13 C -0.136 4.136 14 C 0.153 3.847 15 N -0.602 5.602 16 C -0.223 4.223 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.119 3.881 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.016 0.984 38 H 0.253 0.747 39 H 0.027 0.973 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 -17.332 4.567 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.039 3.961 4 C -0.131 4.131 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.098 4.098 8 C -0.226 4.226 9 C 0.099 3.901 10 O -0.217 6.217 11 C 0.013 3.987 12 H 0.096 0.904 13 C -0.174 4.174 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.217 1.217 24 C -0.007 4.007 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.268 -17.207 4.491 18.288 hybrid contribution 0.408 0.854 -0.701 1.178 sum -3.859 -16.352 3.790 17.224 Atomic orbital electron populations 1.22718 0.80885 1.02560 1.00221 1.87788 1.19704 1.28018 1.95565 1.20998 0.89759 0.84121 1.01194 1.18948 0.93939 0.91456 1.08767 1.20772 0.94378 0.96483 0.96415 1.21008 0.93720 0.98374 1.05563 1.20959 0.99725 0.91874 0.97233 1.21341 0.93557 0.99219 1.08466 1.18784 0.91271 0.85023 0.95009 1.86134 1.36832 1.11879 1.86876 1.23698 0.92998 0.83712 0.98286 0.90433 1.23203 1.00663 0.94197 0.99372 1.21994 0.96053 0.95150 0.83987 1.44462 1.80080 0.98489 1.09863 1.19142 1.38274 0.87264 0.90455 0.90301 1.24798 1.01877 0.96536 0.97357 1.69766 1.54444 1.10798 1.22146 0.85966 0.77650 0.80624 0.81068 1.20471 1.21634 1.21678 1.21746 0.97884 0.87156 0.93943 0.89704 0.94001 0.93940 0.91806 0.91936 0.84814 0.86179 0.86002 0.84852 0.90838 0.91525 0.86839 0.96567 0.93644 0.95553 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.78 9.18 -35.23 -0.32 -5.10 16 3 C 0.12 1.52 5.80 36.00 0.21 1.73 16 4 C -0.13 -1.89 5.89 -104.48 -0.62 -2.51 16 5 C -0.06 -0.81 9.37 -39.61 -0.37 -1.18 16 6 C -0.17 -2.01 10.04 -39.56 -0.40 -2.41 16 7 C -0.08 -1.01 10.04 -39.60 -0.40 -1.40 16 8 C -0.21 -3.05 8.90 -39.43 -0.35 -3.40 16 9 C 0.15 2.31 6.64 -39.22 -0.26 2.05 16 10 O -0.30 -5.31 9.29 -19.44 -0.18 -5.49 16 11 C 0.07 1.27 2.74 -24.90 -0.07 1.20 16 12 H 0.08 1.32 6.26 -51.93 -0.32 1.00 16 13 C -0.14 -2.61 6.81 -24.59 -0.17 -2.78 16 14 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 15 N -0.60 -15.53 3.40 -169.83 -0.58 -16.10 16 16 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.59 10.09 55.49 0.56 -26.03 16 20 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.12 2.57 6.82 -2.90 -0.02 2.55 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.13 1.58 7.01 -52.48 -0.37 1.21 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.97 5.61 -52.48 -0.29 1.67 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.11 3.05 5.87 -51.93 -0.31 2.74 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.03 0.56 7.79 -51.93 -0.40 0.15 16 40 H 0.04 0.79 8.06 -51.93 -0.42 0.38 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -30.29 326.55 -8.11 -38.40 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.89 Total: 0.36 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -1.59 Total: -7.88 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.02 Total: -42.13 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.50 Total: -10.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.29 -8.11 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229255822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.000 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds