Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 114.00021 * 2 1 4 4 C 1.50690 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.38173 * 120.03092 * 0.02562 * 4 3 2 6 6 C 1.38238 * 120.06150 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.10918 * 359.97242 * 6 5 4 8 8 C 1.38125 * 120.05618 * 0.02562 * 7 6 5 9 9 C 1.38713 * 120.03318 * 179.72902 * 4 3 2 10 10 O 1.35906 * 120.04905 * 0.02562 * 9 4 3 11 11 C 1.42900 * 116.99817 * 174.19467 * 10 9 4 12 12 H 1.09001 * 110.64140 * 326.95984 * 11 10 9 13 13 C 1.55153 * 110.72117 * 203.81512 * 11 10 9 14 14 C 1.54907 * 101.58465 * 206.13498 * 13 11 10 15 15 N 1.47429 * 104.83005 * 37.01031 * 14 13 11 16 16 C 1.36938 * 125.64834 * 155.91208 * 15 14 13 17 17 H 1.07996 * 120.00042 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99853 * 359.97438 * 16 15 14 19 19 N 1.31617 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99645 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47178 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46787 * 119.99867 * 20 18 16 23 23 H 1.48494 * 109.46829 * 239.99434 * 20 18 16 24 24 C 1.47316 * 108.73674 * 335.71643 * 15 14 13 25 25 H 1.08992 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46594 * 299.99583 * 1 2 3 27 27 H 1.08997 * 109.47265 * 59.99325 * 1 2 3 28 28 H 1.08992 * 109.47519 * 300.00678 * 3 2 1 29 29 H 1.09002 * 109.46431 * 60.00511 * 3 2 1 30 30 H 1.08004 * 119.96889 * 359.97219 * 5 4 3 31 31 H 1.08002 * 119.94774 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.97447 * 180.02562 * 7 6 5 33 33 H 1.08003 * 120.02747 * 179.97438 * 8 7 6 34 34 H 1.09004 * 111.00555 * 324.20841 * 13 11 10 35 35 H 1.08997 * 111.00353 * 88.02268 * 13 11 10 36 36 H 1.09001 * 110.36916 * 155.84697 * 14 13 11 37 37 H 1.08993 * 110.36727 * 278.17607 * 14 13 11 38 38 H 0.96999 * 119.99491 * 180.02562 * 19 18 16 39 39 H 1.09000 * 110.06454 * 241.87526 * 24 15 14 40 40 H 1.09004 * 109.85083 * 120.61246 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1074 -0.0605 -0.0016 6 6 5.4854 -0.1704 -0.0017 7 6 6.2720 0.9670 -0.0013 8 6 5.6823 2.2160 -0.0003 9 6 4.2994 2.3289 -0.0064 10 8 3.7166 3.5567 -0.0110 11 6 4.5830 4.6864 0.1119 12 1 5.4414 4.4459 0.7392 13 6 3.8140 5.9088 0.6791 14 6 4.6403 7.0883 0.1083 15 7 5.0438 6.6487 -1.2398 16 6 5.3705 7.4729 -2.2835 17 1 5.6547 7.0511 -3.2361 18 6 5.3363 8.8506 -2.1169 19 7 4.9893 9.3647 -0.9560 20 14 5.7812 9.9749 -3.5409 21 1 6.1321 9.1548 -4.7281 22 1 4.6225 10.8455 -3.8649 23 1 6.9430 10.8181 -3.1614 24 6 5.0423 5.1761 -1.2777 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8465 -0.8898 29 1 1.6887 1.8463 0.8901 30 1 3.4952 -0.9503 -0.0015 31 1 5.9485 -1.1461 -0.0021 32 1 7.3484 0.8786 -0.0018 33 1 6.2970 3.1040 0.0004 34 1 2.7898 5.9331 0.3068 35 1 3.8315 5.9101 1.7689 36 1 4.0263 7.9867 0.0464 37 1 5.5191 7.2701 0.7269 38 1 4.9651 10.3274 -0.8398 39 1 6.0459 4.8063 -1.4879 40 1 4.3484 4.8262 -2.0420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229255822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = -43.780513 kcal Electronic energy + Delta-G solvation = -21407.663097 eV Core-core repulsion = 18188.146289 eV Total energy + Delta-G solvation = -3219.516807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44626 -39.52448 -38.47480 -37.54840 -34.35302 -32.95969 -31.42429 -30.68686 -29.15335 -28.06848 -26.55024 -26.32716 -23.67988 -22.65801 -22.02370 -21.42495 -19.21766 -19.01697 -17.54502 -17.25854 -16.93693 -16.76602 -16.52944 -16.23425 -15.51451 -15.50513 -15.31752 -15.12548 -14.35593 -14.18365 -13.81832 -13.67627 -13.55037 -13.27592 -13.00242 -12.85790 -12.72062 -12.61304 -12.31509 -12.03531 -12.00051 -11.95187 -11.76137 -11.58221 -11.38683 -10.80923 -10.80241 -9.76303 -9.09943 -8.96435 -7.82489 -5.28077 0.35863 0.48601 1.46450 1.47224 1.57812 2.13013 2.47971 2.72917 2.79846 3.28809 3.58158 3.65093 3.86185 3.90884 3.93949 4.08409 4.18236 4.26579 4.40114 4.42242 4.53303 4.55060 4.60052 4.61643 4.63075 4.80954 4.84669 4.86838 4.94015 5.00556 5.08341 5.38875 5.42203 5.46288 5.53736 5.59824 5.72207 5.91184 6.19000 6.24060 6.44788 7.05119 7.69629 8.32642 9.19929 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003909 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.278533 B = 7160.726662 C = 7663.442324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.119 3.881 4 C -0.142 4.142 5 C -0.066 4.066 6 C -0.158 4.158 7 C -0.081 4.081 8 C -0.219 4.219 9 C 0.116 3.884 10 O -0.312 6.312 11 C 0.087 3.913 12 H 0.094 0.906 13 C -0.122 4.122 14 C 0.155 3.845 15 N -0.624 5.624 16 C -0.245 4.245 17 H 0.079 0.921 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.983 3.017 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.119 3.881 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.001 0.999 38 H 0.250 0.750 39 H 0.032 0.968 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -19.389 4.630 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.043 3.957 4 C -0.142 4.142 5 C -0.084 4.084 6 C -0.176 4.176 7 C -0.099 4.099 8 C -0.237 4.237 9 C 0.071 3.929 10 O -0.226 6.226 11 C 0.031 3.969 12 H 0.112 0.888 13 C -0.161 4.161 14 C 0.031 3.969 15 N -0.351 5.351 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.811 3.189 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.216 1.216 24 C -0.007 4.007 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.019 0.981 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.953 -19.304 4.556 20.224 hybrid contribution 0.296 1.350 -0.726 1.561 sum -3.657 -17.954 3.830 18.719 Atomic orbital electron populations 1.22948 0.79200 1.04154 1.00760 1.87757 1.21539 1.27264 1.95627 1.20886 0.89405 0.84669 1.00764 1.19199 0.94623 0.91676 1.08741 1.21019 0.95207 0.96216 0.95982 1.21409 0.93273 0.99650 1.03280 1.21297 1.01250 0.91146 0.96225 1.21441 0.93112 1.00153 1.09023 1.19025 0.92106 0.84523 0.97232 1.86094 1.36615 1.12273 1.87593 1.23365 0.93363 0.84003 0.96190 0.88798 1.23011 0.99501 0.92546 1.01001 1.21773 0.95465 0.96096 0.83594 1.44747 1.80135 1.00235 1.10000 1.19473 1.38440 0.88141 0.91269 0.90321 1.25637 1.02088 0.97840 0.99887 1.70001 1.55090 1.10730 1.23786 0.84950 0.77066 0.78473 0.78441 1.19325 1.21565 1.21578 1.21830 0.97927 0.85050 0.95888 0.87612 0.93265 0.93626 0.92672 0.91946 0.83585 0.82963 0.83393 0.85383 0.91190 0.88451 0.89959 0.98130 0.94020 0.95021 0.95806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -9.23 9.18 -148.98 -1.37 -10.60 16 3 C 0.12 3.06 5.80 71.23 0.41 3.47 16 4 C -0.14 -3.96 5.89 -19.77 -0.12 -4.07 16 5 C -0.07 -1.57 9.37 22.25 0.21 -1.36 16 6 C -0.16 -3.26 10.04 22.28 0.22 -3.04 16 7 C -0.08 -1.83 10.04 22.26 0.22 -1.61 16 8 C -0.22 -6.14 8.90 22.37 0.20 -5.94 16 9 C 0.12 3.60 6.64 22.51 0.15 3.75 16 10 O -0.31 -10.78 9.29 -92.49 -0.86 -11.64 16 11 C 0.09 3.17 2.74 31.78 0.09 3.26 16 12 H 0.09 3.11 6.26 -2.39 -0.01 3.10 16 13 C -0.12 -4.66 6.81 31.98 0.22 -4.45 16 14 C 0.16 7.65 5.89 86.85 0.51 8.16 16 15 N -0.62 -32.89 3.40 -691.23 -2.35 -35.24 16 16 C -0.24 -13.94 10.28 84.03 0.86 -13.08 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 19 N -0.95 -55.86 10.09 21.65 0.22 -55.64 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.12 5.17 6.82 86.67 0.59 5.77 16 25 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.15 3.06 7.01 -2.91 -0.02 3.04 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.13 3.66 5.61 -2.91 -0.02 3.64 16 34 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.08 4.59 5.87 -2.39 -0.01 4.57 16 37 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.03 1.34 7.79 -2.39 -0.02 1.32 16 40 H 0.02 1.09 8.06 -2.38 -0.02 1.07 16 Total: -1.00 -65.80 326.55 3.97 -61.83 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.02 Total: 14.20 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 5.29 Total: -10.51 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -2.13 Total: -90.89 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -2.23 Total: -22.24 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -65.80 3.97 -61.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229255822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.049 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds