Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42910 * 113.99581 * 2 1 4 4 C 1.50696 * 109.46763 * 179.97438 * 3 2 1 5 5 C 1.38163 * 120.03236 * 359.97438 * 4 3 2 6 6 C 1.38248 * 120.06158 * 179.97438 * 5 4 3 7 7 C 1.38295 * 120.10744 * 0.02562 * 6 5 4 8 8 C 1.38129 * 120.05400 * 0.02562 * 7 6 5 9 9 C 1.38718 * 120.02764 * 179.97438 * 4 3 2 10 10 O 1.35899 * 120.04959 * 0.04485 * 9 4 3 11 11 C 1.42903 * 116.99344 * 180.02562 * 10 9 4 12 12 H 1.08997 * 110.64367 * 38.90621 * 11 10 9 13 13 C 1.55161 * 110.71633 * 162.24560 * 11 10 9 14 14 C 1.54910 * 101.58225 * 153.86521 * 13 11 10 15 15 N 1.47426 * 104.83089 * 322.98874 * 14 13 11 16 16 C 1.36942 * 125.65090 * 204.16255 * 15 14 13 17 17 H 1.07997 * 120.00063 * 158.30021 * 16 15 14 18 18 C 1.38811 * 119.99660 * 338.30754 * 16 15 14 19 19 N 1.31622 * 119.99712 * 157.11952 * 18 16 15 20 20 Si 1.86797 * 120.00155 * 337.12139 * 18 16 15 21 21 H 1.48501 * 109.47336 * 84.77770 * 20 18 16 22 22 H 1.48501 * 109.47268 * 204.77336 * 20 18 16 23 23 H 1.48492 * 109.47185 * 324.77224 * 20 18 16 24 24 C 1.47027 * 108.70388 * 24.12896 * 15 14 13 25 25 H 1.08992 * 109.47638 * 300.00199 * 1 2 3 26 26 H 1.09001 * 109.47238 * 60.00760 * 1 2 3 27 27 H 1.08999 * 109.46662 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47251 * 59.99686 * 3 2 1 29 29 H 1.09004 * 109.46715 * 299.99598 * 3 2 1 30 30 H 1.08001 * 119.96949 * 359.97438 * 5 4 3 31 31 H 1.07989 * 119.94893 * 180.02562 * 6 5 4 32 32 H 1.07996 * 119.96839 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.02539 * 179.72628 * 8 7 6 34 34 H 1.09003 * 111.00330 * 271.93399 * 13 11 10 35 35 H 1.08992 * 111.00746 * 35.79424 * 13 11 10 36 36 H 1.09002 * 110.37213 * 204.15311 * 14 13 11 37 37 H 1.09003 * 110.46466 * 81.87249 * 14 13 11 38 38 H 0.97003 * 120.00042 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.88114 * 239.52332 * 24 15 14 40 40 H 1.08994 * 109.87907 * 118.36060 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.1073 -0.0604 0.0016 6 6 5.4854 -0.1702 0.0017 7 6 6.2720 0.9672 0.0013 8 6 5.6821 2.2162 0.0013 9 6 4.2992 2.3291 0.0002 10 8 3.7164 3.5567 0.0001 11 6 4.5886 4.6888 -0.0009 12 1 5.4514 4.5085 -0.6420 13 6 3.8284 5.9669 -0.4434 14 6 4.6564 7.0772 0.2505 15 7 5.0497 6.4992 1.5484 16 6 5.3723 7.2098 2.6737 17 1 5.3065 6.7422 3.6450 18 6 5.7836 8.5311 2.5660 19 7 5.6637 9.3437 3.5945 20 14 6.5074 9.1561 0.9613 21 1 5.4094 9.5677 0.0501 22 1 7.3862 10.3214 1.2353 23 1 7.3020 8.0763 0.3229 24 6 5.0376 5.0333 1.4348 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8901 30 1 3.4952 -0.9502 0.0024 31 1 5.9485 -1.1458 0.0021 32 1 7.3483 0.8788 0.0009 33 1 6.2968 3.1042 0.0055 34 1 3.8532 6.0808 -1.5272 35 1 2.8021 5.9579 -0.0764 36 1 4.0460 7.9676 0.4012 37 1 5.5398 7.3193 -0.3403 38 1 5.9515 10.2670 3.5193 39 1 4.3356 4.6116 2.1541 40 1 6.0377 4.6394 1.6151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229255823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -24.532553 kcal Electronic energy + Delta-G solvation = -21503.286998 eV Core-core repulsion = 18284.604845 eV Total energy + Delta-G solvation = -3218.682153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36736 -38.44374 -37.50976 -36.30614 -32.53611 -31.96051 -30.23998 -29.46845 -28.15961 -27.25940 -25.47310 -24.48270 -22.49984 -21.64716 -20.78760 -20.13617 -18.10293 -17.09723 -16.61323 -16.20497 -16.02803 -15.55049 -15.30681 -14.85016 -14.61909 -14.33787 -14.13556 -13.53832 -13.28046 -12.87908 -12.73042 -12.49146 -12.41338 -12.03589 -11.86763 -11.79020 -11.52648 -11.17426 -11.09511 -11.00667 -10.56615 -10.38913 -10.20022 -10.08536 -9.97161 -9.54124 -8.78452 -8.70709 -8.04251 -7.10093 -6.00631 -3.33287 1.33608 1.48868 3.28546 3.30187 3.43953 3.46522 3.56216 3.77630 4.49740 4.74079 4.83285 4.90604 4.99247 5.06911 5.11621 5.15368 5.19815 5.25475 5.29825 5.37542 5.42578 5.43751 5.46832 5.51778 5.70889 5.82405 5.94721 6.01855 6.12194 6.29862 6.37712 6.42123 6.48830 6.51477 6.56266 6.64139 6.87564 7.03573 7.55940 7.66049 8.26073 8.77329 9.62252 10.09799 11.15311 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.004222 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.047881 B = 6630.218861 C = 7140.056694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.115 3.885 4 C -0.128 4.128 5 C -0.062 4.062 6 C -0.166 4.166 7 C -0.079 4.079 8 C -0.207 4.207 9 C 0.144 3.856 10 O -0.303 6.303 11 C 0.069 3.931 12 H 0.081 0.919 13 C -0.121 4.121 14 C 0.114 3.886 15 N -0.604 5.604 16 C -0.246 4.246 17 H 0.091 0.909 18 C 0.026 3.974 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.283 1.283 22 H -0.300 1.300 23 H -0.277 1.277 24 C 0.116 3.884 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.045 0.955 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -17.793 -10.616 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.039 3.961 4 C -0.129 4.129 5 C -0.080 4.080 6 C -0.184 4.184 7 C -0.097 4.097 8 C -0.225 4.225 9 C 0.098 3.902 10 O -0.216 6.216 11 C 0.013 3.987 12 H 0.098 0.902 13 C -0.159 4.159 14 C -0.011 4.011 15 N -0.332 5.332 16 C -0.372 4.372 17 H 0.109 0.891 18 C -0.173 4.173 19 N -0.547 5.547 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.228 1.228 23 H -0.203 1.203 24 C -0.010 4.010 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.621 -17.685 -10.445 21.294 hybrid contribution 0.640 0.792 -0.805 1.298 sum -4.981 -16.892 -11.250 20.898 Atomic orbital electron populations 1.22722 0.80838 1.02613 1.00215 1.87792 1.19741 1.27949 1.95561 1.21005 0.89728 0.84205 1.01174 1.18937 0.93953 0.91400 1.08613 1.20783 0.94395 0.96504 0.96342 1.21028 0.93715 0.98429 1.05265 1.20968 0.99793 0.91850 0.97131 1.21330 0.93475 0.99270 1.08436 1.18731 0.91290 0.84767 0.95426 1.86107 1.36138 1.11776 1.87604 1.23610 0.92811 0.83795 0.98527 0.90151 1.22847 1.00540 0.92561 0.99976 1.21964 0.95813 0.95858 0.87429 1.44647 1.79669 0.99818 1.09116 1.18620 1.39900 0.94074 0.84645 0.89096 1.25067 0.99532 0.95967 0.96724 1.69850 1.48654 1.05121 1.31093 0.86968 0.79864 0.77636 0.84553 1.21011 1.22762 1.20258 1.21834 0.98838 0.86987 0.93305 0.93883 0.94036 0.89671 0.91738 0.91983 0.84740 0.86103 0.85931 0.84880 0.90757 0.89776 0.91565 0.95531 0.92572 0.93737 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.58 9.18 -35.23 -0.32 -4.90 16 3 C 0.11 1.44 5.80 36.00 0.21 1.65 16 4 C -0.13 -1.77 5.89 -104.47 -0.62 -2.39 16 5 C -0.06 -0.78 9.37 -39.61 -0.37 -1.15 16 6 C -0.17 -1.91 10.04 -39.56 -0.40 -2.31 16 7 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 8 C -0.21 -2.89 8.84 -39.43 -0.35 -3.24 16 9 C 0.14 2.15 6.59 -39.22 -0.26 1.89 16 10 O -0.30 -4.87 9.31 -19.42 -0.18 -5.05 16 11 C 0.07 1.16 2.78 -24.89 -0.07 1.09 16 12 H 0.08 1.24 6.37 -51.93 -0.33 0.91 16 13 C -0.12 -2.03 6.81 -24.58 -0.17 -2.20 16 14 C 0.11 2.44 4.72 -2.53 -0.01 2.43 16 15 N -0.60 -14.70 3.16 -170.07 -0.54 -15.24 16 16 C -0.25 -7.00 10.55 -15.06 -0.16 -7.16 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.03 0.76 5.42 -17.43 -0.09 0.67 16 19 N -0.90 -27.76 13.97 55.49 0.78 -26.98 16 20 Si 0.88 22.22 24.34 -169.99 -4.14 18.08 16 21 H -0.28 -6.81 6.62 56.52 0.37 -6.44 16 22 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.28 -6.88 6.82 56.52 0.39 -6.49 16 24 C 0.12 2.36 6.59 -3.06 -0.02 2.34 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.13 1.52 7.00 -52.49 -0.37 1.16 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.85 5.49 -52.49 -0.29 1.56 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.49 7.06 -51.93 -0.37 1.12 16 37 H 0.03 0.58 5.57 -51.93 -0.29 0.29 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.04 0.94 8.06 -51.93 -0.42 0.52 16 40 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -31.53 321.70 -7.01 -38.54 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.87 Total: -0.96 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.59 Total: -8.35 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.24 Total: -42.22 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.50 Total: -9.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.53 -7.01 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229255823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.012 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds