Wall clock time and date at job start Mon Mar 30 2020 01:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 109.46939 * 2 1 4 4 C 1.46908 * 109.46694 * 240.00416 * 2 1 3 5 5 C 1.46897 * 109.47170 * 120.00322 * 2 1 3 6 6 C 1.52998 * 109.47301 * 64.48595 * 5 2 1 7 7 H 1.09005 * 109.47162 * 53.23151 * 6 5 2 8 8 C 1.50700 * 109.47438 * 173.23013 * 6 5 2 9 9 H 1.08001 * 120.00026 * 240.00504 * 8 6 5 10 10 C 1.37877 * 119.99977 * 59.99630 * 8 6 5 11 11 N 1.31518 * 120.00057 * 180.02562 * 10 8 6 12 12 Si 1.86803 * 119.99895 * 0.02562 * 10 8 6 13 13 H 1.48500 * 109.46790 * 269.99860 * 12 10 8 14 14 H 1.48493 * 109.47212 * 29.99972 * 12 10 8 15 15 H 1.48497 * 109.46842 * 150.00108 * 12 10 8 16 16 O 1.42902 * 109.47079 * 293.22723 * 6 5 2 17 17 C 1.35500 * 116.99801 * 149.99752 * 16 6 5 18 18 N 1.32396 * 120.26193 * 359.72607 * 17 16 6 19 19 N 1.28268 * 122.23724 * 179.69223 * 18 17 16 20 20 C 1.31897 * 122.64299 * 0.59656 * 19 18 17 21 21 C 1.38452 * 120.13283 * 359.71295 * 20 19 18 22 22 C 1.40128 * 117.87105 * 359.97438 * 21 20 19 23 23 C 1.43196 * 121.18697 * 180.02562 * 22 21 20 24 24 N 5.50487 * 29.00353 * 132.59999 * 2 1 3 25 25 H 1.09008 * 109.46630 * 290.69069 * 1 2 3 26 26 H 1.08996 * 109.47339 * 50.68926 * 1 2 3 27 27 H 1.09004 * 109.47023 * 170.69473 * 1 2 3 28 28 H 1.08999 * 109.46644 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47379 * 299.99990 * 3 2 1 30 30 H 1.08996 * 109.46832 * 60.00590 * 3 2 1 31 31 H 1.08998 * 109.46613 * 299.99317 * 4 2 1 32 32 H 1.08997 * 109.47051 * 59.99970 * 4 2 1 33 33 H 1.09007 * 109.46699 * 179.97438 * 4 2 1 34 34 H 1.08993 * 109.47112 * 304.48303 * 5 2 1 35 35 H 1.09001 * 109.46736 * 184.48013 * 5 2 1 36 36 H 0.96999 * 119.99707 * 179.97438 * 11 10 8 37 37 H 1.07994 * 119.93394 * 179.68384 * 20 19 18 38 38 H 1.08000 * 121.05883 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1996 5 6 1.9587 -0.6925 1.1994 6 6 1.5429 -2.1639 1.1442 7 1 1.8680 -2.5982 0.1987 8 6 2.1833 -2.9101 2.2862 9 1 2.8492 -3.7364 2.0855 10 6 1.9192 -2.5379 3.5872 11 7 2.4784 -3.1888 4.5839 12 14 0.7670 -1.1091 3.9343 13 1 1.5474 0.1529 3.9940 14 1 -0.2447 -1.0147 2.8515 15 1 0.0824 -1.3297 5.2335 16 8 0.1211 -2.2614 1.2493 17 6 -0.4714 -3.3089 0.6265 18 7 0.2585 -4.1845 -0.0468 19 7 -0.2619 -5.1926 -0.6453 20 6 -1.5597 -5.4275 -0.6459 21 6 -2.4209 -4.5735 0.0219 22 6 -1.8662 -3.4713 0.6859 23 6 -2.6910 -2.5432 1.3992 24 7 -3.3455 -1.8067 1.9647 25 1 -0.3633 0.3631 0.9615 26 1 -0.3634 0.6510 -0.7951 27 1 -0.3633 -1.0142 -0.1662 28 1 3.0486 1.3850 -0.0005 29 1 1.5953 1.8989 -0.8900 30 1 1.5954 1.8988 0.8900 31 1 1.5953 -1.7201 -1.1995 32 1 1.5952 -0.1786 -2.0895 33 1 3.0487 -0.6921 -1.1998 34 1 1.5313 -0.2273 2.0875 35 1 3.0457 -0.6235 1.2403 36 1 2.2929 -2.9266 5.4991 37 1 -1.9515 -6.2873 -1.1688 38 1 -3.4861 -4.7518 0.0315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229604205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:48 Heat of formation + Delta-G solvation = 186.092630 kcal Electronic energy + Delta-G solvation = -22907.143204 eV Core-core repulsion = 19678.117024 eV Total energy + Delta-G solvation = -3229.026180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.82318 -42.23797 -39.52319 -37.86977 -34.98063 -34.38034 -33.06980 -31.95865 -30.72199 -30.59886 -28.14794 -26.87250 -25.57623 -24.93104 -23.13093 -20.74500 -20.29141 -19.31016 -19.03789 -18.82514 -18.43648 -17.58901 -17.01679 -16.36358 -16.13365 -15.61094 -15.52644 -15.27727 -15.14853 -14.78521 -14.59471 -14.49402 -14.45413 -14.35284 -14.23326 -14.16700 -14.00560 -13.88319 -13.73259 -12.76118 -12.49225 -12.25185 -12.02779 -11.55338 -11.35656 -11.07632 -10.67313 -10.35130 -9.97675 -7.83249 -6.04108 -0.86684 -0.12137 -0.06306 1.40320 1.49416 1.60399 1.77793 1.79903 1.91582 1.97904 2.00200 2.16683 2.44474 2.60704 2.70255 2.88967 2.93086 2.96253 3.15144 3.17089 3.22426 3.30085 3.34850 3.48044 3.48969 3.51640 3.57541 3.69209 3.71967 3.77954 3.79219 4.24324 4.31353 4.39623 4.62266 4.92768 5.50098 5.97054 6.27788 6.65427 7.28490 7.56403 7.66696 9.25535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.275 5.275 3 C -0.045 4.045 4 C -0.049 4.049 5 C -0.012 4.012 6 C 0.155 3.845 7 H 0.096 0.904 8 C -0.545 4.545 9 H 0.102 0.898 10 C 0.092 3.908 11 N -0.833 5.833 12 Si 0.850 3.150 13 H -0.274 1.274 14 H -0.233 1.233 15 H -0.273 1.273 16 O -0.310 6.310 17 C 0.315 3.685 18 N -0.277 5.277 19 N -0.178 5.178 20 C 0.001 3.999 21 C -0.030 4.030 22 C -0.061 4.061 23 C 0.258 3.742 24 N -0.389 5.389 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.284 0.716 37 H 0.186 0.814 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 10.293 -16.281 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.066 4.934 3 C -0.187 4.187 4 C -0.190 4.190 5 C -0.130 4.130 6 C 0.102 3.898 7 H 0.113 0.887 8 C -0.581 4.581 9 H 0.120 0.880 10 C -0.121 4.121 11 N -0.464 5.464 12 Si 0.678 3.322 13 H -0.201 1.201 14 H -0.158 1.158 15 H -0.198 1.198 16 O -0.215 6.215 17 C 0.128 3.872 18 N -0.135 5.135 19 N -0.022 5.022 20 C -0.164 4.164 21 C -0.062 4.062 22 C -0.076 4.076 23 C -0.059 4.059 24 N -0.065 5.065 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.167 0.833 36 H 0.095 0.905 37 H 0.203 0.797 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.559 11.223 -15.464 19.171 hybrid contribution -1.677 0.688 1.054 2.097 sum -3.236 11.911 -14.410 18.973 Atomic orbital electron populations 1.24365 0.76836 1.09442 1.08293 1.46487 1.15317 1.15020 1.16574 1.24111 1.05545 0.80547 1.08458 1.24192 1.05718 1.02627 0.86499 1.25425 1.05534 0.96284 0.85801 1.20948 0.76610 0.88791 1.03461 0.88673 1.20970 1.30589 1.18662 0.87851 0.87985 1.25196 0.94321 0.96317 0.96275 1.69795 1.38555 1.37587 1.00483 0.87530 0.81936 0.81657 0.81076 1.20076 1.15758 1.19809 1.86822 1.28197 1.40177 1.66336 1.21492 0.88103 0.89174 0.88381 1.73333 1.29823 1.00488 1.09837 1.72745 1.12154 1.08431 1.08866 1.24200 0.90576 1.01301 1.00353 1.22544 1.03043 0.89925 0.90677 1.16310 0.89874 0.97085 1.04375 1.24916 0.93473 0.93580 0.93899 1.81309 1.08555 1.08944 1.07656 0.86559 0.87004 0.85828 0.86057 0.86554 0.86672 0.85822 0.86662 0.85783 0.86821 0.83282 0.90538 0.79741 0.81741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.47 7.17 60.06 0.43 0.90 16 2 N -0.28 3.00 0.05 -395.62 -0.02 2.98 16 3 C -0.05 0.62 8.00 60.07 0.48 1.10 16 4 C -0.05 0.61 7.54 60.07 0.45 1.06 16 5 C -0.01 0.06 3.27 -3.83 -0.01 0.05 16 6 C 0.16 -0.02 1.60 -27.88 -0.04 -0.06 16 7 H 0.10 -0.18 4.70 -51.93 -0.24 -0.43 16 8 C -0.54 -4.05 9.51 -34.44 -0.33 -4.38 16 9 H 0.10 1.15 8.06 -52.49 -0.42 0.73 16 10 C 0.09 0.92 5.45 -17.82 -0.10 0.83 16 11 N -0.83 -11.68 13.96 55.43 0.77 -10.90 16 12 Si 0.85 5.47 23.84 -169.99 -4.05 1.42 16 13 H -0.27 -1.25 6.93 56.52 0.39 -0.86 16 14 H -0.23 -0.81 5.08 56.52 0.29 -0.52 16 15 H -0.27 -2.72 7.11 56.52 0.40 -2.32 16 16 O -0.31 -0.17 3.30 -18.19 -0.06 -0.23 16 17 C 0.31 0.24 6.73 -16.44 -0.11 0.13 16 18 N -0.28 -0.47 9.83 30.74 0.30 -0.17 16 19 N -0.18 -0.19 11.47 30.51 0.35 0.16 16 20 C 0.00 0.00 11.29 -17.45 -0.20 -0.20 16 21 C -0.03 0.09 9.97 -38.79 -0.39 -0.29 16 22 C -0.06 0.03 5.78 -106.39 -0.62 -0.59 16 23 C 0.26 0.34 15.02 -22.47 -0.34 0.00 16 24 N -0.39 -1.40 18.54 41.84 0.78 -0.63 16 25 H 0.12 -0.95 7.72 -51.92 -0.40 -1.35 16 26 H 0.11 -1.46 8.00 -51.93 -0.42 -1.87 16 27 H 0.12 -0.95 4.96 -51.93 -0.26 -1.21 16 28 H 0.12 -1.78 8.12 -51.93 -0.42 -2.20 16 29 H 0.12 -1.83 8.07 -51.93 -0.42 -2.25 16 30 H 0.11 -1.51 8.14 -51.93 -0.42 -1.93 16 31 H 0.12 -1.24 5.86 -51.93 -0.30 -1.55 16 32 H 0.11 -1.71 8.14 -51.93 -0.42 -2.13 16 33 H 0.12 -1.67 8.14 -51.93 -0.42 -2.09 16 34 H 0.11 -0.35 3.32 -51.93 -0.17 -0.53 16 35 H 0.15 -1.02 8.09 -51.93 -0.42 -1.44 16 36 H 0.28 3.74 8.31 -40.82 -0.34 3.40 16 37 H 0.19 -1.06 8.06 -52.49 -0.42 -1.48 16 38 H 0.17 -1.01 8.06 -52.49 -0.42 -1.44 16 LS Contribution 307.18 15.07 4.63 4.63 Total: 0.00 -22.74 307.18 -2.92 -25.65 By element: Atomic # 1 Polarization: -16.60 SS G_CDS: -4.85 Total: -21.45 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.77 Total: -1.46 kcal Atomic # 7 Polarization: -10.75 SS G_CDS: 2.18 Total: -8.57 kcal Atomic # 8 Polarization: -0.17 SS G_CDS: -0.06 Total: -0.23 kcal Atomic # 14 Polarization: 5.47 SS G_CDS: -4.05 Total: 1.42 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -22.74 -2.92 -25.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229604205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.748 kcal (2) G-P(sol) polarization free energy of solvation -22.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds