Wall clock time and date at job start Mon Mar 30 2020 01:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 109.46939 * 2 1 4 4 C 1.46908 * 109.46694 * 240.00416 * 2 1 3 5 5 C 1.46897 * 109.47170 * 120.00322 * 2 1 3 6 6 C 1.52998 * 109.47301 * 64.48595 * 5 2 1 7 7 H 1.09005 * 109.47162 * 53.23151 * 6 5 2 8 8 C 1.50700 * 109.47438 * 173.23013 * 6 5 2 9 9 H 1.08001 * 120.00026 * 240.00504 * 8 6 5 10 10 C 1.37877 * 119.99977 * 59.99630 * 8 6 5 11 11 N 1.31518 * 120.00057 * 180.02562 * 10 8 6 12 12 Si 1.86803 * 119.99895 * 0.02562 * 10 8 6 13 13 H 1.48500 * 109.46790 * 269.99860 * 12 10 8 14 14 H 1.48493 * 109.47212 * 29.99972 * 12 10 8 15 15 H 1.48497 * 109.46842 * 150.00108 * 12 10 8 16 16 O 1.42902 * 109.47079 * 293.22723 * 6 5 2 17 17 C 1.35500 * 116.99801 * 149.99752 * 16 6 5 18 18 N 1.32396 * 120.26193 * 359.72607 * 17 16 6 19 19 N 1.28268 * 122.23724 * 179.69223 * 18 17 16 20 20 C 1.31897 * 122.64299 * 0.59656 * 19 18 17 21 21 C 1.38452 * 120.13283 * 359.71295 * 20 19 18 22 22 C 1.40128 * 117.87105 * 359.97438 * 21 20 19 23 23 C 1.43196 * 121.18697 * 180.02562 * 22 21 20 24 24 N 5.50487 * 29.00353 * 132.59999 * 2 1 3 25 25 H 1.09008 * 109.46630 * 290.69069 * 1 2 3 26 26 H 1.08996 * 109.47339 * 50.68926 * 1 2 3 27 27 H 1.09004 * 109.47023 * 170.69473 * 1 2 3 28 28 H 1.08999 * 109.46644 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47379 * 299.99990 * 3 2 1 30 30 H 1.08996 * 109.46832 * 60.00590 * 3 2 1 31 31 H 1.08998 * 109.46613 * 299.99317 * 4 2 1 32 32 H 1.08997 * 109.47051 * 59.99970 * 4 2 1 33 33 H 1.09007 * 109.46699 * 179.97438 * 4 2 1 34 34 H 1.08993 * 109.47112 * 304.48303 * 5 2 1 35 35 H 1.09001 * 109.46736 * 184.48013 * 5 2 1 36 36 H 0.96999 * 119.99707 * 179.97438 * 11 10 8 37 37 H 1.07994 * 119.93394 * 179.68384 * 20 19 18 38 38 H 1.08000 * 121.05883 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1996 5 6 1.9587 -0.6925 1.1994 6 6 1.5429 -2.1639 1.1442 7 1 1.8680 -2.5982 0.1987 8 6 2.1833 -2.9101 2.2862 9 1 2.8492 -3.7364 2.0855 10 6 1.9192 -2.5379 3.5872 11 7 2.4784 -3.1888 4.5839 12 14 0.7670 -1.1091 3.9343 13 1 1.5474 0.1529 3.9940 14 1 -0.2447 -1.0147 2.8515 15 1 0.0824 -1.3297 5.2335 16 8 0.1211 -2.2614 1.2493 17 6 -0.4714 -3.3089 0.6265 18 7 0.2585 -4.1845 -0.0468 19 7 -0.2619 -5.1926 -0.6453 20 6 -1.5597 -5.4275 -0.6459 21 6 -2.4209 -4.5735 0.0219 22 6 -1.8662 -3.4713 0.6859 23 6 -2.6910 -2.5432 1.3992 24 7 -3.3455 -1.8067 1.9647 25 1 -0.3633 0.3631 0.9615 26 1 -0.3634 0.6510 -0.7951 27 1 -0.3633 -1.0142 -0.1662 28 1 3.0486 1.3850 -0.0005 29 1 1.5953 1.8989 -0.8900 30 1 1.5954 1.8988 0.8900 31 1 1.5953 -1.7201 -1.1995 32 1 1.5952 -0.1786 -2.0895 33 1 3.0487 -0.6921 -1.1998 34 1 1.5313 -0.2273 2.0875 35 1 3.0457 -0.6235 1.2403 36 1 2.2929 -2.9266 5.4991 37 1 -1.9515 -6.2873 -1.1688 38 1 -3.4861 -4.7518 0.0315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229604205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:48 Heat of formation + Delta-G solvation = 171.035326 kcal Electronic energy + Delta-G solvation = -22907.796137 eV Core-core repulsion = 19678.117024 eV Total energy + Delta-G solvation = -3229.679114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.20829 -42.12434 -39.50024 -38.00907 -35.37308 -34.39988 -33.20654 -31.92017 -29.75392 -29.66885 -28.07163 -26.88328 -25.61362 -24.49716 -23.01840 -20.74081 -20.43680 -19.01055 -18.75169 -18.21800 -17.99753 -17.38405 -17.01189 -16.56627 -16.09537 -15.52769 -15.30961 -15.22128 -14.86549 -14.67747 -14.47278 -14.33950 -14.03722 -13.95698 -13.82468 -13.48510 -13.35381 -13.28466 -13.13002 -13.00062 -12.65546 -12.44213 -12.20766 -11.80706 -11.46002 -11.28443 -11.04633 -10.70092 -10.05250 -8.57259 -6.77943 -0.81803 -0.04426 0.74385 0.98096 1.18605 1.29954 1.34203 1.73969 1.77389 2.10116 2.41245 2.59287 2.62207 2.79664 2.85904 2.94874 3.04959 3.37682 3.64234 3.67068 3.86259 3.91077 4.04452 4.10300 4.19300 4.28289 4.31784 4.39528 4.43605 4.46258 4.57956 4.61695 4.69567 4.74974 4.80518 5.05373 5.12702 5.79737 6.01792 6.19394 6.51339 6.99747 7.60173 8.56462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.261 5.261 3 C -0.050 4.050 4 C -0.055 4.055 5 C 0.001 3.999 6 C 0.162 3.838 7 H 0.112 0.888 8 C -0.536 4.536 9 H 0.046 0.954 10 C 0.038 3.962 11 N -0.920 5.920 12 Si 0.903 3.097 13 H -0.238 1.238 14 H -0.192 1.192 15 H -0.328 1.328 16 O -0.308 6.308 17 C 0.304 3.696 18 N -0.303 5.303 19 N -0.213 5.213 20 C 0.014 3.986 21 C -0.005 4.005 22 C -0.072 4.072 23 C 0.281 3.719 24 N -0.430 5.430 25 H 0.102 0.898 26 H 0.154 0.846 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.168 0.832 36 H 0.269 0.731 37 H 0.223 0.777 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 12.510 -20.081 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 N 0.082 4.918 3 C -0.190 4.190 4 C -0.195 4.195 5 C -0.120 4.120 6 C 0.108 3.892 7 H 0.130 0.870 8 C -0.574 4.574 9 H 0.064 0.936 10 C -0.165 4.165 11 N -0.556 5.556 12 Si 0.729 3.271 13 H -0.162 1.162 14 H -0.115 1.115 15 H -0.257 1.257 16 O -0.214 6.214 17 C 0.117 3.883 18 N -0.160 5.160 19 N -0.055 5.055 20 C -0.152 4.152 21 C -0.037 4.037 22 C -0.087 4.087 23 C -0.035 4.035 24 N -0.106 5.106 25 H 0.120 0.880 26 H 0.172 0.828 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.117 0.883 35 H 0.186 0.814 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.205 13.472 -19.351 23.796 hybrid contribution -1.255 -0.168 1.949 2.324 sum -4.460 13.304 -17.403 22.355 Atomic orbital electron populations 1.24444 0.77103 1.08953 1.09179 1.46058 1.14980 1.16319 1.14488 1.24400 1.06570 0.78001 1.10014 1.24395 1.06741 1.01537 0.86808 1.24589 1.06491 0.93101 0.87787 1.20792 0.75414 0.91969 1.00976 0.87006 1.21124 1.28909 1.17489 0.89828 0.93568 1.25990 0.95633 0.98735 0.96184 1.70030 1.43434 1.41718 1.00453 0.86789 0.80987 0.80353 0.78954 1.16247 1.11495 1.25749 1.86710 1.27383 1.40075 1.67186 1.21572 0.88714 0.89095 0.88922 1.73267 1.30698 1.01164 1.10827 1.72655 1.14280 1.08649 1.09940 1.24834 0.89332 1.01856 0.99222 1.23025 1.04849 0.87780 0.88024 1.16415 0.89089 0.97950 1.05243 1.25033 0.92651 0.92894 0.92945 1.81335 1.09954 1.10260 1.09093 0.87970 0.82768 0.88075 0.84703 0.83236 0.86955 0.88459 0.82972 0.84374 0.88317 0.81437 0.92137 0.76066 0.77825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.21 7.17 127.69 0.91 2.13 16 2 N -0.26 6.32 0.05 ******* -0.07 6.25 16 3 C -0.05 1.56 8.00 127.69 1.02 2.58 16 4 C -0.05 1.49 7.54 127.69 0.96 2.45 16 5 C 0.00 -0.01 3.27 86.30 0.28 0.27 16 6 C 0.16 0.14 1.60 29.85 0.05 0.19 16 7 H 0.11 -0.30 4.70 -2.38 -0.01 -0.31 16 8 C -0.54 -10.05 9.51 25.60 0.24 -9.81 16 9 H 0.05 1.33 8.06 -2.91 -0.02 1.30 16 10 C 0.04 0.93 5.45 84.65 0.46 1.39 16 11 N -0.92 -31.58 13.96 21.45 0.30 -31.28 16 12 Si 0.90 13.09 23.84 68.60 1.64 14.73 16 13 H -0.24 -1.93 6.93 99.48 0.69 -1.24 16 14 H -0.19 -1.29 5.08 99.48 0.50 -0.78 16 15 H -0.33 -7.84 7.11 99.48 0.71 -7.14 16 16 O -0.31 -0.50 3.30 -88.01 -0.29 -0.80 16 17 C 0.30 0.60 6.73 85.17 0.57 1.17 16 18 N -0.30 -1.32 9.83 -169.54 -1.67 -2.99 16 19 N -0.21 -0.44 11.47 -57.38 -0.66 -1.10 16 20 C 0.01 -0.09 11.29 84.73 0.96 0.86 16 21 C -0.01 0.05 9.97 22.78 0.23 0.27 16 22 C -0.07 0.12 5.78 -21.01 -0.12 -0.01 16 23 C 0.28 0.57 15.02 88.33 1.33 1.89 16 24 N -0.43 -3.00 18.54 19.00 0.35 -2.65 16 25 H 0.10 -1.86 7.72 -2.38 -0.02 -1.88 16 26 H 0.15 -4.67 8.00 -2.39 -0.02 -4.68 16 27 H 0.10 -1.68 4.96 -2.38 -0.01 -1.69 16 28 H 0.13 -4.46 8.12 -2.39 -0.02 -4.48 16 29 H 0.15 -5.50 8.07 -2.39 -0.02 -5.52 16 30 H 0.11 -3.30 8.14 -2.39 -0.02 -3.32 16 31 H 0.10 -2.03 5.86 -2.39 -0.01 -2.05 16 32 H 0.15 -5.17 8.14 -2.39 -0.02 -5.19 16 33 H 0.14 -4.09 8.14 -2.38 -0.02 -4.11 16 34 H 0.10 -0.72 3.32 -2.39 -0.01 -0.72 16 35 H 0.17 -2.47 8.09 -2.39 -0.02 -2.49 16 36 H 0.27 8.96 8.31 -92.71 -0.77 8.19 16 37 H 0.22 -3.29 8.06 -2.91 -0.02 -3.31 16 38 H 0.20 -3.33 8.06 -2.91 -0.02 -3.35 16 Total: 0.00 -64.56 307.18 7.36 -57.20 By element: Atomic # 1 Polarization: -43.64 SS G_CDS: 0.86 Total: -42.78 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.90 Total: 3.40 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: -1.74 Total: -31.76 kcal Atomic # 8 Polarization: -0.50 SS G_CDS: -0.29 Total: -0.80 kcal Atomic # 14 Polarization: 13.09 SS G_CDS: 1.64 Total: 14.73 kcal Total: -64.56 7.36 -57.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229604205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.236 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds