Wall clock time and date at job start Mon Mar 30 2020 01:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47015 * 110.99760 * 2 1 4 4 C 1.53095 * 109.25483 * 182.39251 * 3 2 1 5 5 O 1.43018 * 109.29641 * 303.12561 * 4 3 2 6 6 C 1.43101 * 113.68507 * 58.64976 * 5 4 3 7 7 H 1.08995 * 109.53249 * 61.32526 * 6 5 4 8 8 C 1.52996 * 109.49335 * 181.42275 * 6 5 4 9 9 O 1.42913 * 109.46814 * 294.80335 * 8 6 5 10 10 C 1.35638 * 116.99794 * 180.02562 * 9 8 6 11 11 C 1.38450 * 120.26828 * 0.02562 * 10 9 8 12 12 C 1.38303 * 120.04990 * 180.02562 * 11 10 9 13 13 C 1.38818 * 120.59572 * 359.97438 * 12 11 10 14 14 C 1.36499 * 120.53520 * 0.02562 * 13 12 11 15 15 C 1.40722 * 119.92618 * 359.68175 * 14 13 12 16 16 C 1.41160 * 120.28843 * 180.32473 * 15 14 13 17 17 H 1.08000 * 119.99912 * 150.28856 * 16 15 14 18 18 C 1.39931 * 119.99796 * 330.28546 * 16 15 14 19 19 N 1.30863 * 120.00076 * 161.74822 * 18 16 15 20 20 Si 1.86805 * 119.99899 * 341.74613 * 18 16 15 21 21 H 1.48502 * 109.47151 * 95.41782 * 20 18 16 22 22 H 1.48508 * 109.46951 * 215.41512 * 20 18 16 23 23 H 1.48497 * 109.47239 * 335.41393 * 20 18 16 24 24 C 1.47019 * 110.99778 * 123.63386 * 2 1 3 25 25 H 1.08999 * 109.47441 * 63.95735 * 1 2 3 26 26 H 1.09007 * 109.47064 * 183.95292 * 1 2 3 27 27 H 1.09002 * 109.47552 * 303.95224 * 1 2 3 28 28 H 1.08997 * 109.50558 * 62.45732 * 3 2 1 29 29 H 1.08999 * 109.50572 * 302.32480 * 3 2 1 30 30 H 1.08990 * 109.50987 * 63.08502 * 4 3 2 31 31 H 1.09007 * 109.50697 * 183.17561 * 4 3 2 32 32 H 1.08999 * 109.47633 * 54.80160 * 8 6 5 33 33 H 1.08997 * 109.47546 * 174.80841 * 8 6 5 34 34 H 1.07995 * 119.97412 * 0.02562 * 11 10 9 35 35 H 1.08003 * 119.70458 * 179.97438 * 12 11 10 36 36 H 1.07997 * 119.73252 * 179.97438 * 13 12 11 37 37 H 1.07992 * 120.03213 * 180.02562 * 14 13 12 38 38 H 0.97002 * 119.99850 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.50611 * 297.54349 * 24 2 1 40 40 H 1.09000 * 109.50481 * 57.67665 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0183 0.5580 1.0404 6 6 3.5249 -0.7849 1.0710 7 1 3.8385 -1.3090 0.1682 8 6 4.0824 -1.5057 2.3000 9 8 5.5006 -1.6311 2.1761 10 6 6.1547 -2.2520 3.1892 11 6 5.4532 -2.7331 4.2816 12 6 6.1248 -3.3650 5.3123 13 6 7.5029 -3.5246 5.2646 14 6 8.2184 -3.0596 4.1992 15 6 7.5570 -2.4186 3.1353 16 6 8.2886 -1.9410 2.0266 17 1 7.8257 -1.8988 1.0517 18 6 9.6136 -1.5220 2.1907 19 7 10.4016 -1.4212 1.1507 20 14 10.2576 -1.1063 3.8942 21 1 10.9439 -2.2922 4.4669 22 1 11.2173 0.0229 3.7987 23 1 9.1235 -0.7192 4.7713 24 6 1.9958 -0.7602 1.1428 25 1 -0.3634 0.4512 -0.9233 26 1 -0.3633 -1.0253 0.0708 27 1 -0.3634 0.5739 0.8524 28 1 1.6827 1.8825 0.9110 29 1 1.6133 1.9092 -0.8682 30 1 3.8384 0.8644 -0.9963 31 1 3.9221 2.3399 -0.0037 32 1 3.8453 -0.9324 3.1962 33 1 3.6352 -2.4969 2.3739 34 1 4.3808 -2.6148 4.3288 35 1 5.5720 -3.7378 6.1620 36 1 8.0132 -4.0198 6.0774 37 1 9.2902 -3.1885 4.1703 38 1 11.3202 -1.1311 1.2646 39 1 1.6827 -0.2843 2.0720 40 1 1.6133 -1.7804 1.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:37 Heat of formation + Delta-G solvation = -52.005885 kcal Electronic energy + Delta-G solvation = -21608.084147 eV Core-core repulsion = 18388.210661 eV Total energy + Delta-G solvation = -3219.873486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75964 -38.67585 -36.35414 -35.59145 -33.51231 -32.18873 -30.42731 -29.13644 -28.72408 -26.51962 -24.88931 -24.19133 -22.74404 -20.98403 -20.57799 -20.26254 -17.42692 -17.00043 -16.56095 -16.28537 -15.55494 -15.19937 -15.06163 -14.81549 -14.35521 -14.14023 -13.90837 -13.75761 -13.48330 -12.84542 -12.54798 -12.38972 -12.15166 -12.02208 -11.89086 -11.61382 -11.44861 -11.02221 -10.91403 -10.67373 -10.54933 -10.39600 -9.97052 -9.65154 -9.60869 -9.54174 -9.06088 -8.62012 -7.66566 -7.10819 -6.84656 -4.28485 2.61575 2.70859 3.17444 3.28447 3.40034 3.51327 3.81881 4.06964 4.12781 4.57687 4.79740 4.83595 4.95728 5.09097 5.11044 5.27254 5.31499 5.37139 5.42086 5.51207 5.57483 5.58542 5.62077 5.77795 5.86583 5.95390 6.04727 6.11411 6.28720 6.64221 6.68825 6.70861 6.87602 7.02848 7.22405 7.30668 7.55265 7.64267 7.85746 8.09410 8.30491 8.50217 8.87558 8.91661 10.17893 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.004778 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.721048 B = 5858.302446 C = 6800.153434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.061 3.939 5 O -0.365 6.365 6 C 0.097 3.903 7 H 0.078 0.922 8 C 0.072 3.928 9 O -0.293 6.293 10 C 0.030 3.970 11 C -0.172 4.172 12 C -0.217 4.217 13 C -0.102 4.102 14 C -0.222 4.222 15 C 0.080 3.920 16 C -0.427 4.427 17 H 0.095 0.905 18 C 0.083 3.917 19 N -0.809 5.809 20 Si 0.909 3.091 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.245 1.245 24 C 0.027 3.973 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.284 0.716 39 H 0.045 0.955 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 3.617 -0.729 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.016 4.016 5 O -0.283 6.283 6 C 0.039 3.961 7 H 0.096 0.904 8 C -0.005 4.005 9 O -0.207 6.207 10 C -0.014 4.014 11 C -0.192 4.192 12 C -0.237 4.237 13 C -0.121 4.121 14 C -0.242 4.242 15 C 0.077 3.923 16 C -0.455 4.455 17 H 0.113 0.887 18 C -0.135 4.135 19 N -0.433 5.433 20 Si 0.736 3.264 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.168 1.168 24 C -0.101 4.101 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.628 3.616 -1.382 15.132 hybrid contribution -0.346 0.445 1.375 1.486 sum -14.974 4.061 -0.007 15.515 Atomic orbital electron populations 1.22383 0.86846 1.02121 1.00922 1.62161 1.08145 1.13877 1.42477 1.22863 0.97243 0.89518 1.01551 1.22647 0.91348 0.96823 0.90789 1.88176 1.69651 1.22915 1.47591 1.22106 0.90696 0.84152 0.99142 0.90431 1.22415 0.82953 0.98454 0.96630 1.86046 1.17402 1.74838 1.42403 1.19107 0.92308 1.01169 0.88821 1.20691 0.97691 1.04639 0.96132 1.20105 0.94068 1.09785 0.99748 1.20265 0.94046 1.00364 0.97412 1.20535 0.98490 1.07532 0.97642 1.17141 0.88587 0.93204 0.93371 1.19330 0.94960 1.34974 0.96253 0.88702 1.26138 0.95891 0.92548 0.98932 1.69714 1.06870 1.34196 1.32569 0.86344 0.79299 0.77940 0.82825 1.19726 1.21891 1.16780 1.22701 0.95635 0.99570 0.92224 0.91134 0.91160 0.95522 0.93940 0.89682 0.92125 0.88340 0.92454 0.91673 0.88347 0.88869 0.88897 0.87726 0.90590 0.93659 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.63 60.07 0.58 0.80 16 2 N -0.54 -6.18 4.99 -242.59 -1.21 -7.39 16 3 C 0.02 0.18 5.66 -3.71 -0.02 0.16 16 4 C 0.06 0.80 7.00 37.21 0.26 1.06 16 5 O -0.37 -6.32 10.45 -39.73 -0.41 -6.73 16 6 C 0.10 1.53 3.09 -26.68 -0.08 1.44 16 7 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 8 C 0.07 1.27 4.41 37.16 0.16 1.43 16 9 O -0.29 -6.84 9.46 -23.11 -0.22 -7.06 16 10 C 0.03 0.75 6.72 -38.33 -0.26 0.49 16 11 C -0.17 -3.76 9.04 -39.48 -0.36 -4.11 16 12 C -0.22 -4.65 10.04 -39.34 -0.39 -5.05 16 13 C -0.10 -2.30 9.97 -39.99 -0.40 -2.70 16 14 C -0.22 -5.56 7.12 -39.27 -0.28 -5.84 16 15 C 0.08 2.15 5.12 -106.68 -0.55 1.60 16 16 C -0.43 -12.18 9.19 -37.84 -0.35 -12.52 16 17 H 0.10 2.90 7.90 -52.49 -0.41 2.48 16 18 C 0.08 2.27 5.40 -17.33 -0.09 2.17 16 19 N -0.81 -22.30 13.93 55.55 0.77 -21.53 16 20 Si 0.91 21.59 24.52 -169.99 -4.17 17.42 16 21 H -0.27 -6.16 6.71 56.52 0.38 -5.79 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.24 -6.00 6.86 56.52 0.39 -5.61 16 24 C 0.03 0.33 4.94 -3.71 -0.02 0.31 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 33 H 0.07 1.00 7.66 -51.93 -0.40 0.60 16 34 H 0.10 1.83 6.31 -52.49 -0.33 1.50 16 35 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.11 2.58 4.72 -52.49 -0.25 2.34 16 38 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.94 8.11 -51.93 -0.42 0.51 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -30.81 321.33 -8.22 -39.03 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.03 Total: 2.18 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.79 Total: -20.77 kcal Atomic # 7 Polarization: -28.48 SS G_CDS: -0.44 Total: -28.91 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.63 Total: -13.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.17 Total: 17.42 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.81 -8.22 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.976 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds