Wall clock time and date at job start Mon Mar 30 2020 01:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47015 * 110.99760 * 2 1 4 4 C 1.53095 * 109.25483 * 182.39251 * 3 2 1 5 5 O 1.43018 * 109.29641 * 303.12561 * 4 3 2 6 6 C 1.43101 * 113.68507 * 58.64976 * 5 4 3 7 7 H 1.08995 * 109.53249 * 61.32526 * 6 5 4 8 8 C 1.52996 * 109.49335 * 181.42275 * 6 5 4 9 9 O 1.42913 * 109.46814 * 294.80335 * 8 6 5 10 10 C 1.35638 * 116.99794 * 180.02562 * 9 8 6 11 11 C 1.38450 * 120.26828 * 0.02562 * 10 9 8 12 12 C 1.38303 * 120.04990 * 180.02562 * 11 10 9 13 13 C 1.38818 * 120.59572 * 359.97438 * 12 11 10 14 14 C 1.36499 * 120.53520 * 0.02562 * 13 12 11 15 15 C 1.40722 * 119.92618 * 359.68175 * 14 13 12 16 16 C 1.41160 * 120.28843 * 180.32473 * 15 14 13 17 17 H 1.08000 * 119.99912 * 150.28856 * 16 15 14 18 18 C 1.39931 * 119.99796 * 330.28546 * 16 15 14 19 19 N 1.30863 * 120.00076 * 161.74822 * 18 16 15 20 20 Si 1.86805 * 119.99899 * 341.74613 * 18 16 15 21 21 H 1.48502 * 109.47151 * 95.41782 * 20 18 16 22 22 H 1.48508 * 109.46951 * 215.41512 * 20 18 16 23 23 H 1.48497 * 109.47239 * 335.41393 * 20 18 16 24 24 C 1.47019 * 110.99778 * 123.63386 * 2 1 3 25 25 H 1.08999 * 109.47441 * 63.95735 * 1 2 3 26 26 H 1.09007 * 109.47064 * 183.95292 * 1 2 3 27 27 H 1.09002 * 109.47552 * 303.95224 * 1 2 3 28 28 H 1.08997 * 109.50558 * 62.45732 * 3 2 1 29 29 H 1.08999 * 109.50572 * 302.32480 * 3 2 1 30 30 H 1.08990 * 109.50987 * 63.08502 * 4 3 2 31 31 H 1.09007 * 109.50697 * 183.17561 * 4 3 2 32 32 H 1.08999 * 109.47633 * 54.80160 * 8 6 5 33 33 H 1.08997 * 109.47546 * 174.80841 * 8 6 5 34 34 H 1.07995 * 119.97412 * 0.02562 * 11 10 9 35 35 H 1.08003 * 119.70458 * 179.97438 * 12 11 10 36 36 H 1.07997 * 119.73252 * 179.97438 * 13 12 11 37 37 H 1.07992 * 120.03213 * 180.02562 * 14 13 12 38 38 H 0.97002 * 119.99850 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.50611 * 297.54349 * 24 2 1 40 40 H 1.09000 * 109.50481 * 57.67665 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0183 0.5580 1.0404 6 6 3.5249 -0.7849 1.0710 7 1 3.8385 -1.3090 0.1682 8 6 4.0824 -1.5057 2.3000 9 8 5.5006 -1.6311 2.1761 10 6 6.1547 -2.2520 3.1892 11 6 5.4532 -2.7331 4.2816 12 6 6.1248 -3.3650 5.3123 13 6 7.5029 -3.5246 5.2646 14 6 8.2184 -3.0596 4.1992 15 6 7.5570 -2.4186 3.1353 16 6 8.2886 -1.9410 2.0266 17 1 7.8257 -1.8988 1.0517 18 6 9.6136 -1.5220 2.1907 19 7 10.4016 -1.4212 1.1507 20 14 10.2576 -1.1063 3.8942 21 1 10.9439 -2.2922 4.4669 22 1 11.2173 0.0229 3.7987 23 1 9.1235 -0.7192 4.7713 24 6 1.9958 -0.7602 1.1428 25 1 -0.3634 0.4512 -0.9233 26 1 -0.3633 -1.0253 0.0708 27 1 -0.3634 0.5739 0.8524 28 1 1.6827 1.8825 0.9110 29 1 1.6133 1.9092 -0.8682 30 1 3.8384 0.8644 -0.9963 31 1 3.9221 2.3399 -0.0037 32 1 3.8453 -0.9324 3.1962 33 1 3.6352 -2.4969 2.3739 34 1 4.3808 -2.6148 4.3288 35 1 5.5720 -3.7378 6.1620 36 1 8.0132 -4.0198 6.0774 37 1 9.2902 -3.1885 4.1703 38 1 11.3202 -1.1311 1.2646 39 1 1.6827 -0.2843 2.0720 40 1 1.6133 -1.7804 1.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:37 Heat of formation + Delta-G solvation = -73.903590 kcal Electronic energy + Delta-G solvation = -21609.033703 eV Core-core repulsion = 18388.210661 eV Total energy + Delta-G solvation = -3220.823042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00146 -40.27195 -38.04142 -36.66420 -35.47497 -33.40452 -32.30127 -30.61800 -29.96055 -27.72655 -26.78353 -25.11404 -24.10338 -22.58113 -22.28261 -21.43489 -19.37037 -18.72122 -17.82223 -17.37471 -17.13608 -16.52980 -16.20065 -15.93731 -15.83537 -15.75417 -15.47956 -15.31819 -14.79130 -14.46048 -13.92332 -13.83306 -13.39376 -13.30334 -13.23126 -12.92473 -12.74659 -12.60724 -12.38620 -12.24968 -12.12910 -11.74831 -11.65590 -11.47350 -11.41722 -10.96241 -10.69422 -9.54194 -9.46646 -8.93627 -8.84707 -6.35387 0.75850 0.86745 1.25465 1.41191 1.49413 2.14561 2.39345 2.63788 2.68014 2.94739 3.49360 3.82233 3.85523 3.89779 3.97608 4.14951 4.23522 4.26188 4.34787 4.39792 4.42570 4.55385 4.56289 4.59670 4.63594 4.75107 4.80367 4.82838 4.93823 4.99050 5.07344 5.21792 5.31624 5.73592 5.77266 5.82727 5.93309 5.99362 6.16050 6.21445 6.37008 6.50436 6.82282 7.10765 8.25114 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.004778 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.721048 B = 5858.302446 C = 6800.153434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.024 3.976 4 C 0.053 3.947 5 O -0.402 6.402 6 C 0.097 3.903 7 H 0.057 0.943 8 C 0.066 3.934 9 O -0.327 6.327 10 C 0.017 3.983 11 C -0.173 4.173 12 C -0.191 4.191 13 C -0.114 4.114 14 C -0.227 4.227 15 C 0.046 3.954 16 C -0.469 4.469 17 H 0.046 0.954 18 C 0.043 3.957 19 N -0.856 5.856 20 Si 0.966 3.034 21 H -0.251 1.251 22 H -0.278 1.278 23 H -0.257 1.257 24 C 0.038 3.962 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.292 0.708 39 H 0.051 0.949 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 3.086 2.095 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.283 5.283 3 C -0.104 4.104 4 C -0.024 4.024 5 O -0.322 6.322 6 C 0.039 3.961 7 H 0.075 0.925 8 C -0.010 4.010 9 O -0.242 6.242 10 C -0.028 4.028 11 C -0.192 4.192 12 C -0.210 4.210 13 C -0.132 4.132 14 C -0.246 4.246 15 C 0.044 3.956 16 C -0.499 4.499 17 H 0.064 0.936 18 C -0.169 4.169 19 N -0.484 5.484 20 Si 0.789 3.211 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.181 1.181 24 C -0.090 4.090 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.223 3.077 1.436 17.554 hybrid contribution 0.184 0.536 0.564 0.799 sum -17.039 3.612 2.000 17.532 Atomic orbital electron populations 1.22453 0.84720 1.03083 1.01878 1.62169 1.10023 1.13974 1.42125 1.22808 0.95156 0.89738 1.02729 1.22873 0.93488 0.96780 0.89252 1.88111 1.71073 1.23792 1.49193 1.22133 0.93227 0.83324 0.97447 0.92485 1.22779 0.80101 1.00195 0.97895 1.86026 1.20653 1.74783 1.42718 1.19400 0.92165 1.01217 0.89973 1.21139 0.99684 1.03475 0.94889 1.20751 0.93944 1.06272 1.00028 1.20710 0.94864 1.00125 0.97540 1.20717 0.98805 1.07167 0.97939 1.17389 0.90115 0.94356 0.93761 1.19170 0.96349 1.39074 0.95292 0.93556 1.26822 0.95623 0.92113 1.02381 1.69750 1.07629 1.36681 1.34294 0.85485 0.78509 0.78698 0.78361 1.17634 1.20452 1.18091 1.22580 0.92551 1.00986 0.92907 0.89871 0.90200 0.94880 0.93704 0.87310 0.93047 0.87087 0.91707 0.89137 0.84600 0.84366 0.85166 0.87996 0.89793 0.93104 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.63 127.69 1.23 1.60 16 2 N -0.56 -11.67 4.99 -921.41 -4.59 -16.26 16 3 C 0.02 0.48 5.66 86.31 0.49 0.97 16 4 C 0.05 1.39 7.00 72.01 0.50 1.90 16 5 O -0.40 -14.37 10.45 -144.68 -1.51 -15.88 16 6 C 0.10 3.07 3.09 30.63 0.09 3.16 16 7 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 8 C 0.07 2.28 4.41 71.98 0.32 2.59 16 9 O -0.33 -15.82 9.46 -85.22 -0.81 -16.62 16 10 C 0.02 0.85 6.72 23.08 0.16 1.01 16 11 C -0.17 -6.98 9.04 22.34 0.20 -6.78 16 12 C -0.19 -7.21 10.04 22.42 0.23 -6.98 16 13 C -0.11 -4.69 9.97 22.00 0.22 -4.47 16 14 C -0.23 -11.14 7.12 22.47 0.16 -10.98 16 15 C 0.05 2.55 5.12 -21.20 -0.11 2.44 16 16 C -0.47 -28.71 9.19 23.40 0.22 -28.49 16 17 H 0.05 3.14 7.90 -2.91 -0.02 3.12 16 18 C 0.04 2.49 5.40 85.25 0.46 2.96 16 19 N -0.86 -50.12 13.93 21.83 0.30 -49.81 16 20 Si 0.97 45.38 24.52 68.60 1.68 47.07 16 21 H -0.25 -10.86 6.71 99.48 0.67 -10.19 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.26 -12.40 6.86 99.48 0.68 -11.72 16 24 C 0.04 0.86 4.94 86.31 0.43 1.28 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 0.99 8.08 -2.38 -0.02 0.97 16 27 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.06 2.11 7.67 -2.39 -0.02 2.09 16 33 H 0.09 2.59 7.66 -2.39 -0.02 2.57 16 34 H 0.14 4.40 6.31 -2.91 -0.02 4.38 16 35 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 36 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.10 4.97 4.72 -2.91 -0.01 4.95 16 38 H 0.29 15.28 8.30 -92.71 -0.77 14.51 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 1.99 8.11 -2.39 -0.02 1.97 16 Total: -1.00 -71.56 321.33 0.62 -70.94 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.95 Total: 20.37 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 4.59 Total: -39.80 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -4.29 Total: -66.07 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -2.32 Total: -32.51 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.68 Total: 47.07 kcal Total: -71.56 0.62 -70.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.962 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds