Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47024 * 110.99623 * 2 1 4 4 C 1.53093 * 109.25620 * 177.60679 * 3 2 1 5 5 O 1.43020 * 109.25974 * 56.84913 * 4 3 2 6 6 C 1.43015 * 113.73780 * 301.32796 * 5 4 3 7 7 H 1.09003 * 109.50627 * 298.69292 * 6 5 4 8 8 C 1.52996 * 109.50537 * 178.60562 * 6 5 4 9 9 O 1.42894 * 109.47420 * 65.00192 * 8 6 5 10 10 C 1.35644 * 117.00056 * 180.02562 * 9 8 6 11 11 C 1.38439 * 120.26494 * 359.97438 * 10 9 8 12 12 C 1.38310 * 120.04906 * 180.02562 * 11 10 9 13 13 C 1.38824 * 120.59382 * 0.02562 * 12 11 10 14 14 C 1.36489 * 120.53452 * 359.97438 * 13 12 11 15 15 C 1.40728 * 119.93274 * 0.02562 * 14 13 12 16 16 C 1.41146 * 120.28908 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99850 * 154.63761 * 16 15 14 18 18 C 1.39936 * 120.00277 * 334.63927 * 16 15 14 19 19 N 1.30866 * 119.99653 * 342.93185 * 18 16 15 20 20 Si 1.86798 * 120.00233 * 162.93539 * 18 16 15 21 21 H 1.48505 * 109.47127 * 59.99650 * 20 18 16 22 22 H 1.48504 * 109.46987 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46975 * 299.99816 * 20 18 16 24 24 C 1.47006 * 111.00303 * 236.36889 * 2 1 3 25 25 H 1.08999 * 109.47083 * 56.04814 * 1 2 3 26 26 H 1.08999 * 109.46676 * 176.04111 * 1 2 3 27 27 H 1.08995 * 109.46897 * 296.04733 * 1 2 3 28 28 H 1.09001 * 109.50324 * 57.67548 * 3 2 1 29 29 H 1.09000 * 109.50663 * 297.54248 * 3 2 1 30 30 H 1.09004 * 109.51159 * 296.91276 * 4 3 2 31 31 H 1.09001 * 109.54573 * 176.80815 * 4 3 2 32 32 H 1.09010 * 109.46925 * 304.99591 * 8 6 5 33 33 H 1.09003 * 109.47085 * 185.00273 * 8 6 5 34 34 H 1.08001 * 119.97766 * 359.74815 * 11 10 9 35 35 H 1.08005 * 119.70510 * 180.02562 * 12 11 10 36 36 H 1.07997 * 119.73199 * 179.97438 * 13 12 11 37 37 H 1.08002 * 120.03311 * 180.02562 * 14 13 12 38 38 H 0.97006 * 119.99728 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.51123 * 62.45384 * 24 2 1 40 40 H 1.08999 * 109.50331 * 302.32243 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 0.0604 5 8 4.0175 0.5576 -1.0403 6 6 3.5251 -0.7848 -1.0709 7 1 3.8393 -1.3084 -0.1680 8 6 4.0827 -1.5056 -2.2998 9 8 5.5013 -1.6265 -2.1782 10 6 6.1557 -2.2459 -3.1922 11 6 5.4539 -2.7297 -4.2830 12 6 6.1256 -3.3610 -5.3141 13 6 7.5043 -3.5172 -5.2681 14 6 8.2200 -3.0495 -4.2042 15 6 7.5593 -2.4036 -3.1428 16 6 8.2921 -1.9165 -2.0391 17 1 7.9023 -1.0992 -1.4504 18 6 9.5236 -2.4925 -1.7078 19 7 9.8454 -3.6681 -2.1842 20 14 10.7081 -1.5834 -0.5853 21 1 10.0592 -1.3431 0.7287 22 1 11.9319 -2.4016 -0.3903 23 1 11.0745 -0.2829 -1.2016 24 6 1.9959 -0.7601 -1.1427 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0710 27 1 -0.3633 0.4512 0.9233 28 1 1.6133 1.9092 0.8682 29 1 1.6827 1.8827 -0.9110 30 1 3.8385 0.8646 0.9965 31 1 3.9227 2.3398 0.0035 32 1 3.8422 -0.9342 -3.1965 33 1 3.6383 -2.4983 -2.3716 34 1 4.3806 -2.6180 -4.3269 35 1 5.5726 -3.7359 -6.1627 36 1 8.0146 -4.0127 -6.0807 37 1 9.2924 -3.1750 -4.1770 38 1 10.6993 -4.0672 -1.9548 39 1 1.6828 -0.2842 -2.0720 40 1 1.6135 -1.7802 -1.1086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = -54.185817 kcal Electronic energy + Delta-G solvation = -21533.163209 eV Core-core repulsion = 18313.195194 eV Total energy + Delta-G solvation = -3219.968015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73304 -38.46619 -36.16412 -35.55472 -33.52520 -32.14298 -29.69773 -29.04813 -28.49874 -26.42414 -24.99851 -24.18989 -22.58646 -20.83527 -20.31461 -20.28242 -17.38467 -16.64864 -16.44686 -16.26087 -15.47986 -15.18316 -14.99825 -14.78663 -14.25393 -14.09153 -13.91359 -13.72111 -12.96134 -12.66670 -12.54500 -12.39780 -12.10924 -11.83840 -11.61712 -11.46239 -11.20178 -11.06613 -10.89354 -10.78593 -10.41450 -10.40172 -9.85685 -9.68788 -9.53972 -9.34614 -9.07954 -8.61141 -7.41291 -6.94316 -6.61875 -4.15977 2.83500 3.06239 3.14145 3.18665 3.29169 3.54044 3.83105 4.03902 4.22041 4.71849 4.80039 4.84835 5.00362 5.10384 5.12623 5.28680 5.35634 5.37690 5.53519 5.57861 5.59149 5.69222 5.72544 5.79729 5.90324 6.10876 6.15207 6.36680 6.52953 6.70044 6.71769 7.01314 7.18727 7.31081 7.37804 7.43684 7.80652 7.84542 8.13709 8.30258 8.49657 8.79231 8.94072 9.16251 10.29999 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.004895 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.778990 B = 5718.931122 C = 7009.655035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.061 3.939 5 O -0.366 6.366 6 C 0.098 3.902 7 H 0.077 0.923 8 C 0.074 3.926 9 O -0.297 6.297 10 C 0.012 3.988 11 C -0.179 4.179 12 C -0.216 4.216 13 C -0.127 4.127 14 C -0.147 4.147 15 C 0.100 3.900 16 C -0.445 4.445 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.799 5.799 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.264 1.264 24 C 0.027 3.973 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.279 0.721 39 H 0.045 0.955 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 6.316 3.951 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.016 4.016 5 O -0.285 6.285 6 C 0.040 3.960 7 H 0.095 0.905 8 C -0.003 4.003 9 O -0.212 6.212 10 C -0.032 4.032 11 C -0.198 4.198 12 C -0.236 4.236 13 C -0.145 4.145 14 C -0.167 4.167 15 C 0.097 3.903 16 C -0.474 4.474 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.426 5.426 20 Si 0.733 3.267 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.102 4.102 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.741 6.057 4.444 14.791 hybrid contribution -0.264 0.487 -0.245 0.606 sum -13.006 6.544 4.198 15.153 Atomic orbital electron populations 1.22381 0.86856 1.02141 1.00894 1.62163 1.08145 1.13818 1.42544 1.22858 0.97220 0.89573 1.01525 1.22643 0.91427 0.96749 0.90787 1.88144 1.69723 1.23039 1.47548 1.22111 0.90672 0.83959 0.99295 0.90489 1.22355 0.83373 0.98308 0.96256 1.85993 1.17060 1.75314 1.42802 1.19209 0.91910 1.03057 0.89046 1.20591 0.97329 1.05660 0.96221 1.20110 0.94408 1.09494 0.99569 1.20371 0.93885 1.01990 0.98284 1.20866 0.99743 1.03413 0.92635 1.17048 0.87103 0.92592 0.93572 1.19416 1.01568 1.15608 1.10825 0.89928 1.25890 0.98356 0.93992 0.96075 1.69839 1.21866 1.12803 1.38067 0.86359 0.79138 0.80386 0.80778 1.19024 1.20497 1.18875 1.22706 0.95713 0.99571 0.92165 0.95520 0.91145 0.91158 0.89728 0.93941 0.92202 0.88403 0.92718 0.91815 0.88924 0.89467 0.89415 0.85903 0.90992 0.93660 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.63 60.07 0.58 0.80 16 2 N -0.54 -6.25 4.99 -242.59 -1.21 -7.46 16 3 C 0.02 0.18 5.66 -3.71 -0.02 0.16 16 4 C 0.06 0.78 7.01 37.21 0.26 1.04 16 5 O -0.37 -6.29 10.44 -39.95 -0.42 -6.70 16 6 C 0.10 1.56 3.09 -26.68 -0.08 1.48 16 7 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 8 C 0.07 1.35 4.41 37.16 0.16 1.51 16 9 O -0.30 -7.14 9.40 -23.36 -0.22 -7.36 16 10 C 0.01 0.31 6.72 -38.34 -0.26 0.05 16 11 C -0.18 -4.18 9.04 -39.48 -0.36 -4.53 16 12 C -0.22 -5.00 10.04 -39.34 -0.39 -5.40 16 13 C -0.13 -3.07 9.97 -40.00 -0.40 -3.47 16 14 C -0.15 -3.94 8.64 -39.27 -0.34 -4.28 16 15 C 0.10 2.78 5.58 -106.68 -0.59 2.18 16 16 C -0.44 -12.43 8.72 -37.84 -0.33 -12.76 16 17 H 0.08 2.32 7.66 -52.48 -0.40 1.92 16 18 C 0.07 1.91 5.15 -17.33 -0.09 1.82 16 19 N -0.80 -21.23 10.97 55.55 0.61 -20.62 16 20 Si 0.91 19.53 29.59 -169.99 -5.03 14.50 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 24 C 0.03 0.33 4.94 -3.71 -0.02 0.31 16 25 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.97 7.67 -51.92 -0.40 0.58 16 33 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 34 H 0.09 1.87 6.31 -52.49 -0.33 1.53 16 35 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.12 3.35 6.19 -52.49 -0.32 3.03 16 38 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -30.52 326.51 -9.28 -39.81 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.06 Total: 3.98 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -1.88 Total: -21.07 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: -0.60 Total: -28.08 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.64 Total: -14.06 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.52 -9.28 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.380 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds