Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47144 * 2 1 4 4 C 1.35899 * 117.00289 * 180.02562 * 3 2 1 5 5 C 1.38791 * 120.02362 * 359.97438 * 4 3 2 6 6 C 1.38153 * 120.04991 * 179.97438 * 5 4 3 7 7 C 1.38194 * 120.11505 * 0.02562 * 6 5 4 8 8 C 1.38760 * 120.05094 * 0.25263 * 7 6 5 9 9 O 1.35897 * 120.02695 * 179.73134 * 8 7 6 10 10 C 1.42900 * 116.99804 * 5.65740 * 9 8 7 11 11 H 1.08999 * 110.89051 * 32.41609 * 10 9 8 12 12 C 1.55163 * 111.00288 * 156.29820 * 10 9 8 13 13 C 1.54317 * 102.94243 * 153.57584 * 12 10 9 14 14 N 1.47015 * 107.27591 * 337.80510 * 13 12 10 15 15 C 1.36936 * 125.65183 * 178.89665 * 14 13 12 16 16 H 1.08001 * 120.00040 * 180.02562 * 15 14 13 17 17 C 1.38806 * 119.99732 * 0.02562 * 15 14 13 18 18 N 1.31617 * 120.00487 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00054 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46941 * 89.99804 * 19 17 15 21 21 H 1.48500 * 109.47393 * 209.99949 * 19 17 15 22 22 H 1.48504 * 109.46868 * 330.00350 * 19 17 15 23 23 C 1.47425 * 108.70136 * 358.94024 * 14 13 12 24 24 C 1.38614 * 120.02544 * 179.97438 * 4 3 2 25 25 H 1.08996 * 109.47454 * 299.99780 * 1 2 3 26 26 H 1.09006 * 109.47460 * 59.99894 * 1 2 3 27 27 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47226 * 240.00542 * 2 1 3 29 29 H 1.08993 * 109.47531 * 119.99820 * 2 1 3 30 30 H 1.07998 * 119.97620 * 0.02562 * 5 4 3 31 31 H 1.08010 * 119.94344 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.97924 * 179.97438 * 7 6 5 33 33 H 1.08999 * 110.71435 * 271.94210 * 12 10 9 34 34 H 1.09005 * 110.71822 * 35.20752 * 12 10 9 35 35 H 1.08998 * 109.88330 * 97.22424 * 13 12 10 36 36 H 1.09002 * 109.87774 * 218.23101 * 13 12 10 37 37 H 0.97005 * 120.00160 * 179.97438 * 18 17 15 38 38 H 1.09006 * 110.36996 * 265.29127 * 23 14 13 39 39 H 1.08998 * 110.36940 * 142.96725 * 23 14 13 40 40 H 1.08000 * 120.05620 * 0.04563 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1995 0.4251 -0.0005 6 6 5.5692 0.6056 -0.0016 7 6 6.1005 1.8813 -0.0022 8 6 5.2589 2.9845 0.0036 9 8 5.7819 4.2388 0.0086 10 6 7.2009 4.3505 -0.1180 11 1 7.6002 3.5477 -0.7379 12 6 7.6014 5.7397 -0.6813 13 6 9.0262 5.9410 -0.1240 14 7 9.1592 5.0759 1.0573 15 6 10.2830 4.9458 1.8289 16 1 10.2799 4.2806 2.6797 17 6 11.4261 5.6690 1.5174 18 7 11.4302 6.4793 0.4803 19 14 12.9590 5.4922 2.5704 20 1 13.8055 4.3973 2.0323 21 1 13.7236 6.7651 2.5493 22 1 12.5663 5.1737 3.9667 23 6 7.8827 4.3707 1.2729 24 6 3.8839 2.8061 -0.0011 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.7868 -0.5729 -0.0005 31 1 6.2260 -0.2519 -0.0012 32 1 7.1716 2.0198 -0.0026 33 1 7.6119 5.7254 -1.7711 34 1 6.9294 6.5142 -0.3112 35 1 9.7621 5.6569 -0.8762 36 1 9.1695 6.9837 0.1593 37 1 12.2290 6.9849 0.2629 38 1 7.2660 4.9130 1.9898 39 1 8.0649 3.3539 1.6207 40 1 3.2272 3.6635 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230553128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -40.883366 kcal Electronic energy + Delta-G solvation = -21017.849517 eV Core-core repulsion = 17798.458339 eV Total energy + Delta-G solvation = -3219.391177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53023 -40.39655 -38.58849 -37.17127 -34.31859 -32.91062 -31.60731 -30.92716 -30.12511 -29.04822 -26.55857 -24.80129 -23.85072 -22.78534 -22.03427 -21.50776 -19.81743 -19.01665 -17.82683 -17.07145 -17.04271 -17.01141 -16.71592 -16.25654 -15.83109 -15.60485 -14.98680 -14.56315 -14.32679 -14.16864 -13.91773 -13.85847 -13.51731 -13.33807 -12.98221 -12.95041 -12.77014 -12.65361 -12.41191 -12.16382 -12.05119 -11.90381 -11.84030 -11.66505 -11.46068 -11.38169 -10.74203 -9.52851 -9.09695 -8.97414 -7.88565 -5.26166 0.37687 0.41954 1.46356 1.48501 1.57244 1.81298 2.44548 2.57630 2.75195 3.30541 3.60824 3.66070 3.84076 3.90744 3.97659 4.06901 4.09913 4.12594 4.21288 4.27668 4.41479 4.50055 4.56032 4.60498 4.75876 4.80782 4.91542 4.95383 4.97448 5.03349 5.18626 5.29149 5.35205 5.40498 5.47564 5.56517 5.58145 5.69019 6.13009 6.37765 6.48378 7.04956 7.69587 8.33624 9.21969 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041151 B = 0.003199 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.250521 B = 8750.447058 C = 9156.437921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.330 6.330 4 C 0.161 3.839 5 C -0.243 4.243 6 C -0.038 4.038 7 C -0.255 4.255 8 C 0.155 3.845 9 O -0.311 6.311 10 C 0.084 3.916 11 H 0.093 0.907 12 C -0.124 4.124 13 C 0.186 3.814 14 N -0.623 5.623 15 C -0.247 4.247 16 H 0.084 0.916 17 C -0.063 4.063 18 N -0.950 5.950 19 Si 0.983 3.017 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.270 1.270 23 C 0.119 3.881 24 C -0.210 4.210 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.016 0.984 37 H 0.250 0.750 38 H 0.023 0.977 39 H 0.051 0.949 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.764 -14.865 -3.128 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.115 3.885 5 C -0.262 4.262 6 C -0.056 4.056 7 C -0.274 4.274 8 C 0.109 3.891 9 O -0.224 6.224 10 C 0.027 3.973 11 H 0.111 0.889 12 C -0.162 4.162 13 C 0.062 3.938 14 N -0.351 5.351 15 C -0.376 4.376 16 H 0.101 0.899 17 C -0.256 4.256 18 N -0.599 5.599 19 Si 0.810 3.190 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.195 1.195 23 C -0.007 4.007 24 C -0.229 4.229 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.146 0.854 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.841 -14.455 -3.097 23.948 hybrid contribution 1.335 0.225 0.505 1.445 sum -17.506 -14.230 -2.592 22.708 Atomic orbital electron populations 1.21820 0.91511 1.04257 1.03126 1.23137 0.96843 0.80399 1.02686 1.86047 1.18307 1.31863 1.88247 1.18582 0.82963 0.93016 0.93894 1.21404 0.93862 0.98758 1.12137 1.21047 0.94977 0.96513 0.93027 1.21419 1.00249 0.93205 1.12528 1.18842 0.92327 0.84048 0.93858 1.86055 1.23586 1.25540 1.87216 1.23544 0.77082 0.99504 0.97175 0.88910 1.22882 0.96893 0.95061 1.01395 1.20940 0.91325 0.93530 0.88047 1.44612 1.09138 1.49629 1.31678 1.19450 0.89243 1.21608 1.07288 0.89857 1.25692 1.01196 0.98973 0.99768 1.70156 1.28675 1.31337 1.29720 0.85024 0.78899 0.76684 0.78365 1.20916 1.21955 1.19460 1.22003 0.87292 0.96160 0.95219 1.19515 0.92153 0.96649 1.14577 0.92019 0.91920 0.87930 0.90637 0.90787 0.82561 0.82764 0.85377 0.88704 0.90448 0.95724 0.96581 0.94118 0.95912 0.93116 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.04 0.59 5.46 71.98 0.39 0.98 16 3 O -0.33 -7.37 10.13 -92.41 -0.94 -8.30 16 4 C 0.16 4.02 6.68 22.49 0.15 4.17 16 5 C -0.24 -5.05 9.04 22.38 0.20 -4.85 16 6 C -0.04 -0.85 10.03 22.24 0.22 -0.62 16 7 C -0.26 -7.27 8.94 22.38 0.20 -7.07 16 8 C 0.15 4.90 6.68 22.49 0.15 5.05 16 9 O -0.31 -10.99 9.95 -92.40 -0.92 -11.91 16 10 C 0.08 3.11 2.81 31.99 0.09 3.20 16 11 H 0.09 3.26 6.24 -2.39 -0.01 3.25 16 12 C -0.12 -4.78 6.69 31.78 0.21 -4.56 16 13 C 0.19 9.34 5.37 86.73 0.47 9.80 16 14 N -0.62 -32.77 3.39 -692.01 -2.35 -35.12 16 15 C -0.25 -14.02 10.28 84.03 0.86 -13.16 16 16 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 17 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 18 N -0.95 -57.07 10.31 21.65 0.22 -56.85 16 19 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C 0.12 5.16 6.85 86.86 0.60 5.76 16 24 C -0.21 -6.12 9.93 22.46 0.22 -5.89 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.82 7.66 -2.39 -0.02 0.80 16 29 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 30 H 0.16 2.19 6.29 -2.91 -0.02 2.17 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.79 5.64 -2.91 -0.02 3.77 16 33 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.08 2.87 8.14 -2.38 -0.02 2.86 16 35 H 0.02 1.34 7.38 -2.39 -0.02 1.33 16 36 H 0.02 0.89 7.51 -2.39 -0.02 0.88 16 37 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 38 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.05 2.10 7.79 -2.39 -0.02 2.08 16 40 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -67.51 326.45 4.04 -63.47 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.02 Total: 12.08 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.97 Total: -11.08 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -2.13 Total: -91.97 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -1.86 Total: -20.22 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -67.51 4.04 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230553128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.582 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds