Wall clock time and date at job start Mon Mar 30 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42892 * 109.46993 * 2 1 4 4 C 1.35895 * 116.99811 * 179.97438 * 3 2 1 5 5 C 1.38791 * 120.02849 * 0.02562 * 4 3 2 6 6 C 1.38156 * 120.05790 * 179.97438 * 5 4 3 7 7 C 1.38196 * 120.10719 * 359.74332 * 6 5 4 8 8 C 1.38755 * 120.05338 * 0.50952 * 7 6 5 9 9 O 1.35898 * 120.02554 * 179.77037 * 8 7 6 10 10 C 1.42898 * 116.99987 * 185.45643 * 9 8 7 11 11 C 1.53510 * 114.17194 * 156.75193 * 10 9 8 12 12 N 1.47480 * 87.93241 * 87.62175 * 11 10 9 13 13 C 1.46901 * 110.99941 * 138.70144 * 12 11 10 14 14 C 1.50699 * 109.47059 * 169.99964 * 13 12 11 15 15 H 1.07997 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99620 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99750 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47166 * 269.99711 * 18 16 14 20 20 H 1.48495 * 109.47367 * 29.99869 * 18 16 14 21 21 H 1.48508 * 109.47103 * 150.00184 * 18 16 14 22 22 C 1.47487 * 87.83663 * 27.01108 * 12 11 10 23 23 C 1.38619 * 120.02991 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47171 * 299.99801 * 1 2 3 26 26 H 1.08997 * 109.46883 * 59.99652 * 1 2 3 27 27 H 1.09002 * 109.46626 * 239.99768 * 2 1 3 28 28 H 1.08997 * 109.46883 * 120.00348 * 2 1 3 29 29 H 1.07999 * 119.97409 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.94667 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.97588 * 180.25825 * 7 6 5 32 32 H 1.09005 * 113.25939 * 23.79594 * 10 9 8 33 33 H 1.08993 * 113.47789 * 332.85497 * 11 10 9 34 34 H 1.09002 * 113.47580 * 202.38755 * 11 10 9 35 35 H 1.09001 * 109.47151 * 50.00426 * 13 12 11 36 36 H 1.09003 * 109.47267 * 289.99775 * 13 12 11 37 37 H 0.97005 * 119.99401 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.47745 * 87.75602 * 22 12 11 39 39 H 1.08998 * 113.47454 * 218.22284 * 22 12 11 40 40 H 1.08004 * 120.05104 * 0.04538 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4250 0.0005 6 6 5.5693 0.6053 0.0005 7 6 6.1006 1.8810 -0.0048 8 6 5.2590 2.9843 0.0005 9 8 5.7821 4.2385 0.0000 10 6 4.8626 5.3250 0.1267 11 6 5.4868 6.6163 0.6738 12 7 5.8364 6.9720 -0.7141 13 6 5.5944 8.3984 -0.9689 14 6 6.1859 8.7780 -2.3020 15 1 6.6907 8.0340 -2.9003 16 6 6.0826 10.0752 -2.7578 17 7 6.5993 10.4065 -3.9210 18 14 5.2102 11.3622 -1.7226 19 1 3.7678 11.3866 -2.0752 20 1 5.3624 11.0267 -0.2840 21 1 5.8066 12.6965 -1.9856 22 6 4.6899 6.1548 -1.1532 23 6 3.8841 2.8059 0.0011 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7868 -0.5730 0.0005 30 1 6.2260 -0.2522 0.0009 31 1 7.1717 2.0195 -0.0090 32 1 3.9265 5.0427 0.6087 33 1 6.3550 6.4434 1.3096 34 1 4.7606 7.2922 1.1255 35 1 6.0604 8.9921 -0.1824 36 1 4.5212 8.5885 -0.9802 37 1 6.5269 11.3192 -4.2414 38 1 3.7511 6.7075 -1.1891 39 1 4.8829 5.5908 -2.0658 40 1 3.2274 3.6634 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230555788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:35 Heat of formation + Delta-G solvation = -1.508520 kcal Electronic energy + Delta-G solvation = -20776.110343 eV Core-core repulsion = 17558.426587 eV Total energy + Delta-G solvation = -3217.683756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71248 -39.79276 -38.18119 -36.17545 -32.78186 -32.28935 -30.26536 -30.04108 -29.09331 -25.79805 -25.47375 -24.13623 -22.96946 -21.75000 -21.14871 -19.61520 -18.74037 -16.79886 -16.64753 -16.37542 -16.27476 -16.05606 -15.47062 -14.94994 -14.54541 -14.02651 -13.96518 -13.82868 -13.43140 -13.21333 -12.98283 -12.66990 -12.43770 -12.31691 -12.20937 -11.80222 -11.73806 -11.31353 -11.17132 -10.96571 -10.83890 -10.52713 -10.14400 -10.00613 -9.78560 -9.35748 -8.62774 -8.58165 -8.09274 -7.99425 -6.04789 -4.02302 1.27657 1.39346 2.90174 3.20661 3.26108 3.34208 3.34982 3.68136 4.40663 4.56569 4.58430 4.61008 4.66111 4.73356 4.84854 4.93053 5.04942 5.09936 5.20114 5.24999 5.33451 5.44027 5.48462 5.49269 5.69185 5.70070 5.72731 5.93407 6.03399 6.13797 6.18548 6.30343 6.35252 6.44143 6.56223 6.66606 7.20082 7.29227 7.53734 7.67585 7.81372 8.63188 9.06851 9.55951 11.08698 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.003286 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.460021 B = 8519.890549 C = 9047.406702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.167 3.833 5 C -0.254 4.254 6 C -0.043 4.043 7 C -0.190 4.190 8 C 0.177 3.823 9 O -0.270 6.270 10 C 0.043 3.957 11 C -0.003 4.003 12 N -0.444 5.444 13 C 0.125 3.875 14 C -0.506 4.506 15 H 0.081 0.919 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.268 1.268 21 H -0.285 1.285 22 C -0.006 4.006 23 C -0.247 4.247 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.029 0.971 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 -21.843 11.146 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.230 6.230 4 C 0.121 3.879 5 C -0.273 4.273 6 C -0.061 4.061 7 C -0.209 4.209 8 C 0.131 3.869 9 O -0.182 6.182 10 C -0.014 4.014 11 C -0.133 4.133 12 N -0.166 5.166 13 C -0.002 4.002 14 C -0.544 4.544 15 H 0.099 0.901 16 C -0.135 4.135 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.193 1.193 21 H -0.210 1.210 22 C -0.135 4.135 23 C -0.266 4.266 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.333 -21.542 10.724 25.810 hybrid contribution -1.402 0.952 0.645 1.813 sum -10.735 -20.590 11.368 25.854 Atomic orbital electron populations 1.21785 0.92776 1.02799 1.03645 1.22778 0.95804 0.81980 1.01448 1.86064 1.19205 1.29336 1.88384 1.18621 0.82067 0.93407 0.93763 1.21067 0.94354 0.97740 1.14129 1.20688 0.94192 0.96281 0.94918 1.20384 1.00119 0.90090 1.10292 1.18814 0.90742 0.85357 0.92029 1.86225 1.34716 1.11163 1.86075 1.23715 0.92407 0.85696 0.99539 1.24062 1.00439 0.92802 0.95949 1.69057 1.34799 1.09393 1.03397 1.20776 0.94833 0.85682 0.98945 1.20959 1.35950 0.96060 1.01464 0.90120 1.24935 0.95403 0.98201 0.94921 1.69900 1.45682 1.19112 1.19168 0.86859 0.80068 0.81528 0.81275 1.20295 1.19252 1.21036 1.24275 0.95358 0.95830 0.98082 1.20462 0.94392 0.96288 1.15435 0.90400 0.91514 0.91420 0.91943 0.92024 0.85694 0.85225 0.84909 0.89241 0.89323 0.90459 0.95282 0.98585 0.92641 0.90483 0.89433 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.43 5.46 37.16 0.20 0.63 16 3 O -0.32 -3.67 10.13 -19.41 -0.20 -3.87 16 4 C 0.17 2.08 6.68 -39.24 -0.26 1.82 16 5 C -0.25 -2.71 9.04 -39.41 -0.36 -3.06 16 6 C -0.04 -0.45 10.04 -39.63 -0.40 -0.85 16 7 C -0.19 -2.42 9.98 -39.41 -0.39 -2.81 16 8 C 0.18 2.59 6.68 -39.24 -0.26 2.32 16 9 O -0.27 -4.50 10.18 -19.42 -0.20 -4.69 16 10 C 0.04 0.68 4.07 -26.20 -0.11 0.57 16 11 C 0.00 -0.05 7.52 -7.54 -0.06 -0.11 16 12 N -0.44 -9.68 6.32 -246.08 -1.55 -11.23 16 13 C 0.12 3.07 3.64 -4.98 -0.02 3.05 16 14 C -0.51 -14.89 9.94 -34.44 -0.34 -15.23 16 15 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 18 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 22 C -0.01 -0.11 7.55 -7.53 -0.06 -0.17 16 23 C -0.25 -3.37 8.96 -39.29 -0.35 -3.73 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 29 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 30 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.09 1.16 5.90 -51.93 -0.31 0.85 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 35 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 36 H 0.00 -0.08 6.73 -51.93 -0.35 -0.43 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 39 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.14 1.81 5.88 -52.48 -0.31 1.50 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -33.29 329.91 -8.80 -42.09 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.81 Total: -0.62 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.12 Total: -16.23 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.78 Total: -38.56 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.39 Total: -8.57 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.29 -8.80 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230555788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.582 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds