Wall clock time and date at job start Mon Mar 30 2020 01:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42892 * 109.46993 * 2 1 4 4 C 1.35895 * 116.99811 * 179.97438 * 3 2 1 5 5 C 1.38791 * 120.02849 * 0.02562 * 4 3 2 6 6 C 1.38156 * 120.05790 * 179.97438 * 5 4 3 7 7 C 1.38196 * 120.10719 * 359.74332 * 6 5 4 8 8 C 1.38755 * 120.05338 * 0.50952 * 7 6 5 9 9 O 1.35898 * 120.02554 * 179.77037 * 8 7 6 10 10 C 1.42898 * 116.99987 * 185.45643 * 9 8 7 11 11 C 1.53510 * 114.17194 * 156.75193 * 10 9 8 12 12 N 1.47480 * 87.93241 * 87.62175 * 11 10 9 13 13 C 1.46901 * 110.99941 * 138.70144 * 12 11 10 14 14 C 1.50699 * 109.47059 * 169.99964 * 13 12 11 15 15 H 1.07997 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99620 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99750 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47166 * 269.99711 * 18 16 14 20 20 H 1.48495 * 109.47367 * 29.99869 * 18 16 14 21 21 H 1.48508 * 109.47103 * 150.00184 * 18 16 14 22 22 C 1.47487 * 87.83663 * 27.01108 * 12 11 10 23 23 C 1.38619 * 120.02991 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47171 * 299.99801 * 1 2 3 26 26 H 1.08997 * 109.46883 * 59.99652 * 1 2 3 27 27 H 1.09002 * 109.46626 * 239.99768 * 2 1 3 28 28 H 1.08997 * 109.46883 * 120.00348 * 2 1 3 29 29 H 1.07999 * 119.97409 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.94667 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.97588 * 180.25825 * 7 6 5 32 32 H 1.09005 * 113.25939 * 23.79594 * 10 9 8 33 33 H 1.08993 * 113.47789 * 332.85497 * 11 10 9 34 34 H 1.09002 * 113.47580 * 202.38755 * 11 10 9 35 35 H 1.09001 * 109.47151 * 50.00426 * 13 12 11 36 36 H 1.09003 * 109.47267 * 289.99775 * 13 12 11 37 37 H 0.97005 * 119.99401 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.47745 * 87.75602 * 22 12 11 39 39 H 1.08998 * 113.47454 * 218.22284 * 22 12 11 40 40 H 1.08004 * 120.05104 * 0.04538 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4250 0.0005 6 6 5.5693 0.6053 0.0005 7 6 6.1006 1.8810 -0.0048 8 6 5.2590 2.9843 0.0005 9 8 5.7821 4.2385 0.0000 10 6 4.8626 5.3250 0.1267 11 6 5.4868 6.6163 0.6738 12 7 5.8364 6.9720 -0.7141 13 6 5.5944 8.3984 -0.9689 14 6 6.1859 8.7780 -2.3020 15 1 6.6907 8.0340 -2.9003 16 6 6.0826 10.0752 -2.7578 17 7 6.5993 10.4065 -3.9210 18 14 5.2102 11.3622 -1.7226 19 1 3.7678 11.3866 -2.0752 20 1 5.3624 11.0267 -0.2840 21 1 5.8066 12.6965 -1.9856 22 6 4.6899 6.1548 -1.1532 23 6 3.8841 2.8059 0.0011 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7868 -0.5730 0.0005 30 1 6.2260 -0.2522 0.0009 31 1 7.1717 2.0195 -0.0090 32 1 3.9265 5.0427 0.6087 33 1 6.3550 6.4434 1.3096 34 1 4.7606 7.2922 1.1255 35 1 6.0604 8.9921 -0.1824 36 1 4.5212 8.5885 -0.9802 37 1 6.5269 11.3192 -4.2414 38 1 3.7511 6.7075 -1.1891 39 1 4.8829 5.5908 -2.0658 40 1 3.2274 3.6634 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230555788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:34 Heat of formation + Delta-G solvation = -25.696442 kcal Electronic energy + Delta-G solvation = -20777.159210 eV Core-core repulsion = 17558.426587 eV Total energy + Delta-G solvation = -3218.732623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84565 -40.86662 -39.30231 -37.22718 -34.95436 -32.93212 -31.86386 -31.01872 -30.19561 -27.51644 -26.91984 -24.85047 -24.15251 -22.94005 -22.56691 -20.78528 -19.77015 -18.98989 -17.71612 -17.37369 -17.08290 -16.97742 -16.84054 -16.39838 -16.11020 -15.43929 -15.05286 -14.95575 -14.72335 -14.46105 -14.12166 -13.99100 -13.62100 -13.37090 -13.09987 -13.05131 -12.96324 -12.58458 -12.45501 -12.22030 -11.83258 -11.80236 -11.70558 -11.59784 -11.48905 -11.28755 -10.81857 -9.62664 -9.58172 -9.03950 -8.31420 -6.36589 0.35856 0.45080 1.32686 1.36189 1.46987 1.99335 2.25304 2.32525 2.74499 3.00614 3.23590 3.29982 3.70651 3.89215 4.00579 4.08088 4.13511 4.21101 4.29389 4.35684 4.38096 4.40899 4.45889 4.53060 4.55393 4.67254 4.70950 4.82810 4.89068 4.89289 4.95413 5.18770 5.28368 5.36577 5.44628 5.46359 5.66492 5.68041 5.93820 6.34098 6.50354 6.54857 6.69512 7.26767 8.86265 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.003286 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.460021 B = 8519.890549 C = 9047.406702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.158 3.842 5 C -0.247 4.247 6 C -0.035 4.035 7 C -0.205 4.205 8 C 0.151 3.849 9 O -0.295 6.295 10 C 0.064 3.936 11 C 0.001 3.999 12 N -0.486 5.486 13 C 0.136 3.864 14 C -0.523 4.523 15 H 0.024 0.976 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.957 3.043 19 H -0.262 1.262 20 H -0.244 1.244 21 H -0.281 1.281 22 C -0.012 4.012 23 C -0.261 4.261 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.032 0.968 36 H 0.012 0.988 37 H 0.268 0.732 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 -23.234 13.502 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.112 3.888 5 C -0.265 4.265 6 C -0.053 4.053 7 C -0.224 4.224 8 C 0.106 3.894 9 O -0.208 6.208 10 C 0.007 3.993 11 C -0.128 4.128 12 N -0.209 5.209 13 C 0.008 3.992 14 C -0.561 4.561 15 H 0.043 0.957 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.779 3.221 19 H -0.187 1.187 20 H -0.168 1.168 21 H -0.206 1.206 22 C -0.141 4.141 23 C -0.280 4.280 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.173 0.827 30 H 0.182 0.818 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.271 -22.976 13.093 28.746 hybrid contribution -0.778 1.169 -0.173 1.415 sum -12.049 -21.806 12.921 28.065 Atomic orbital electron populations 1.21824 0.91702 1.04236 1.03042 1.23114 0.96732 0.80482 1.02656 1.86054 1.18699 1.31819 1.88218 1.18777 0.82880 0.93482 0.93667 1.21445 0.94219 0.98625 1.12257 1.21090 0.94780 0.96335 0.93105 1.20647 1.00291 0.90699 1.10754 1.19067 0.91563 0.84866 0.93945 1.86179 1.35650 1.12209 1.86787 1.23539 0.93345 0.85249 0.97148 1.24157 1.01456 0.93652 0.93494 1.68944 1.36995 1.07802 1.07166 1.20548 0.94953 0.87785 0.95893 1.21224 1.36047 0.95395 1.03437 0.95736 1.26013 0.96176 1.00917 0.96317 1.70080 1.47508 1.20056 1.21536 0.85578 0.78932 0.77470 0.80128 1.18713 1.16783 1.20640 1.24342 0.94860 0.96129 0.98798 1.20515 0.94063 0.97181 1.16262 0.87926 0.91908 0.92238 0.90902 0.90493 0.82705 0.81797 0.84744 0.86052 0.88893 0.87777 0.94949 0.97075 0.92313 0.89094 0.91743 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.04 0.57 5.46 71.98 0.39 0.97 16 3 O -0.33 -7.22 10.13 -92.37 -0.94 -8.15 16 4 C 0.16 3.69 6.68 22.49 0.15 3.84 16 5 C -0.25 -4.57 9.04 22.38 0.20 -4.37 16 6 C -0.04 -0.66 10.04 22.24 0.22 -0.43 16 7 C -0.21 -5.07 9.98 22.38 0.22 -4.84 16 8 C 0.15 4.39 6.68 22.49 0.15 4.54 16 9 O -0.30 -9.95 10.18 -92.40 -0.94 -10.89 16 10 C 0.06 1.96 4.07 30.94 0.13 2.09 16 11 C 0.00 0.04 7.52 83.58 0.63 0.66 16 12 N -0.49 -21.43 6.32 -932.85 -5.89 -27.32 16 13 C 0.14 6.65 3.64 85.56 0.31 6.96 16 14 C -0.52 -31.92 9.94 25.60 0.25 -31.66 16 15 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 16 C 0.00 0.16 5.47 84.66 0.46 0.62 16 17 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 18 Si 0.96 44.28 27.47 68.60 1.88 46.16 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C -0.01 -0.45 7.55 83.58 0.63 0.18 16 23 C -0.26 -6.99 8.96 22.46 0.20 -6.79 16 24 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 28 H 0.08 0.76 7.66 -2.39 -0.02 0.74 16 29 H 0.16 1.88 6.29 -2.91 -0.02 1.86 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.12 2.94 5.90 -2.38 -0.01 2.92 16 33 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.10 2.84 7.91 -2.39 -0.02 2.82 16 35 H 0.03 1.55 7.13 -2.39 -0.02 1.53 16 36 H 0.01 0.52 6.73 -2.39 -0.02 0.51 16 37 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 38 H 0.09 3.11 7.42 -2.39 -0.02 3.09 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.14 3.52 5.88 -2.91 -0.02 3.50 16 Total: -1.00 -76.01 329.91 0.08 -75.93 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.97 Total: 14.44 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.70 Total: -28.99 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -5.59 Total: -88.50 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.88 Total: -19.04 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -76.01 0.08 -75.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230555788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.233 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds