Wall clock time and date at job start Mon Mar 30 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00229 * 2 1 4 4 H 1.07999 * 120.00125 * 202.38441 * 3 2 1 5 5 C 1.38811 * 119.99511 * 22.37519 * 3 2 1 6 6 N 1.31611 * 120.00477 * 11.33438 * 5 3 2 7 7 Si 1.86803 * 119.99588 * 191.32934 * 5 3 2 8 8 H 1.48496 * 109.47444 * 90.00343 * 7 5 3 9 9 H 1.48503 * 109.46931 * 210.00436 * 7 5 3 10 10 H 1.48499 * 109.47261 * 329.99827 * 7 5 3 11 11 C 1.46501 * 120.00063 * 180.02562 * 2 1 3 12 12 C 1.50706 * 109.46778 * 269.99796 * 11 2 1 13 13 C 1.38256 * 119.92532 * 270.01652 * 12 11 2 14 14 C 1.38240 * 120.14681 * 179.97438 * 13 12 11 15 15 C 1.38571 * 119.99791 * 359.72879 * 14 13 12 16 16 O 1.35988 * 120.07158 * 180.26684 * 15 14 13 17 17 C 1.39148 * 119.85225 * 0.55090 * 15 14 13 18 18 O 1.35994 * 120.07427 * 179.71898 * 17 15 14 19 19 C 1.42900 * 117.00559 * 179.72015 * 18 17 15 20 20 C 1.52996 * 109.47540 * 180.02562 * 19 18 17 21 21 C 1.53004 * 117.50155 * 185.00603 * 20 19 18 22 22 C 1.52995 * 117.49728 * 116.38047 * 20 19 18 23 23 C 1.38243 * 119.92757 * 89.99942 * 12 11 2 24 24 H 1.09004 * 109.46836 * 274.20580 * 1 2 3 25 25 H 1.09000 * 109.47103 * 34.20382 * 1 2 3 26 26 H 1.08999 * 109.47157 * 154.20511 * 1 2 3 27 27 H 0.97005 * 120.00610 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47628 * 149.99709 * 11 2 1 29 29 H 1.09006 * 109.47205 * 29.99189 * 11 2 1 30 30 H 1.07999 * 119.92365 * 0.02562 * 13 12 11 31 31 H 1.07998 * 119.99737 * 179.97438 * 14 13 12 32 32 H 0.96700 * 114.00853 * 270.28189 * 16 15 14 33 33 H 1.09002 * 109.46394 * 60.00260 * 19 18 17 34 34 H 1.09000 * 109.47264 * 300.01142 * 19 18 17 35 35 H 1.09007 * 115.55904 * 330.69221 * 20 19 18 36 36 H 1.08997 * 117.49914 * 145.02153 * 21 20 19 37 37 H 1.08998 * 117.49353 * 359.97438 * 21 20 19 38 38 H 1.08993 * 117.50378 * 0.02562 * 22 20 19 39 39 H 1.09003 * 117.50053 * 214.98039 * 22 20 19 40 40 H 1.07998 * 120.00031 * 0.03941 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1687 1.2211 -0.3562 5 6 1.5340 2.3427 0.4576 6 7 0.3846 2.2688 1.0944 7 14 2.3371 4.0046 0.1698 8 1 1.8681 4.5637 -1.1235 9 1 1.9689 4.9297 1.2716 10 1 3.8126 3.8416 0.1326 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 6 3.6012 -1.3042 2.0707 14 6 3.8360 -1.7007 3.3740 15 6 2.9125 -2.4962 4.0332 16 8 3.1394 -2.8825 5.3172 17 6 1.7554 -2.9036 3.3765 18 8 0.8488 -3.6891 4.0173 19 6 -0.3187 -4.0638 3.2833 20 6 -1.2144 -4.9393 4.1619 21 6 -2.4639 -5.5427 3.5171 22 6 -2.5989 -4.3964 4.5215 23 6 1.5261 -2.5027 2.0701 24 1 -0.3633 0.0754 1.0249 25 1 -0.3633 0.8499 -0.5777 26 1 -0.3633 -0.9252 -0.4472 27 1 -0.0455 3.0772 1.4146 28 1 3.1499 -1.1383 -0.5144 29 1 1.6084 -2.0282 -0.5146 30 1 4.3192 -0.6800 1.5597 31 1 4.7372 -1.3871 3.8797 32 1 3.6241 -3.7154 5.3976 33 1 -0.0251 -4.6212 2.3938 34 1 -0.8646 -3.1681 2.9870 35 1 -0.6973 -5.5365 4.9130 36 1 -2.7687 -6.5368 3.8440 37 1 -2.6479 -5.3155 2.4671 38 1 -2.8718 -3.4157 4.1319 39 1 -2.9927 -4.6365 5.5092 40 1 0.6268 -2.8141 1.5596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233227288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:12 Heat of formation + Delta-G solvation = -25.491255 kcal Electronic energy + Delta-G solvation = -21506.422782 eV Core-core repulsion = 18287.699057 eV Total energy + Delta-G solvation = -3218.723725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.36980 -39.28010 -38.24398 -37.65671 -36.64808 -33.47797 -31.32532 -30.91735 -28.72536 -27.89531 -26.90765 -23.73769 -23.49670 -23.26918 -22.11812 -21.45584 -19.48419 -18.75339 -18.46720 -17.37689 -17.04587 -16.77539 -16.20829 -16.15349 -15.53675 -15.49394 -15.14074 -15.03509 -14.83547 -14.24308 -13.79001 -13.42217 -13.29052 -12.95017 -12.85700 -12.60383 -12.51391 -12.42733 -12.19939 -12.13015 -12.05242 -11.89563 -11.77873 -11.59703 -11.32041 -10.92370 -10.65095 -9.66654 -9.02484 -8.79410 -7.83511 -5.30663 0.32899 0.49423 1.47027 1.47373 1.56073 2.08161 2.49673 2.74756 2.84600 3.28700 3.34498 3.71208 3.85083 3.86326 3.94178 4.02092 4.06680 4.18639 4.28320 4.43759 4.49428 4.51429 4.64198 4.74762 4.79010 4.81107 4.93252 4.97093 5.06721 5.17264 5.21229 5.25612 5.32158 5.41051 5.62227 5.70789 5.79853 5.85285 6.30819 6.34161 6.93951 7.13918 7.84396 8.28178 9.20286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.005025 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.196053 B = 5570.570500 C = 6436.050264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.606 5.606 3 C -0.256 4.256 4 H 0.078 0.922 5 C -0.052 4.052 6 N -0.940 5.940 7 Si 0.966 3.034 8 H -0.285 1.285 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.178 3.822 12 C -0.064 4.064 13 C -0.135 4.135 14 C -0.110 4.110 15 C 0.047 3.953 16 O -0.497 6.497 17 C 0.090 3.910 18 O -0.318 6.318 19 C 0.086 3.914 20 C -0.168 4.168 21 C -0.150 4.150 22 C -0.185 4.185 23 C -0.191 4.191 24 H -0.004 1.004 25 H 0.021 0.979 26 H 0.032 0.968 27 H 0.246 0.754 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.399 0.601 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -16.534 3.628 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.327 5.327 3 C -0.386 4.386 4 H 0.095 0.905 5 C -0.247 4.247 6 N -0.587 5.587 7 Si 0.795 3.205 8 H -0.211 1.211 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.053 3.947 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.128 4.128 15 C 0.002 3.998 16 O -0.308 6.308 17 C 0.044 3.956 18 O -0.233 6.233 19 C 0.011 3.989 20 C -0.186 4.186 21 C -0.187 4.187 22 C -0.222 4.222 23 C -0.211 4.211 24 H 0.015 0.985 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.168 0.832 32 H 0.256 0.744 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.043 -15.963 3.974 16.450 hybrid contribution 0.232 0.990 -0.061 1.019 sum 0.189 -14.973 3.913 15.477 Atomic orbital electron populations 1.20545 0.82686 0.96143 0.97249 1.44286 1.02087 1.01327 1.85018 1.19585 0.98454 0.86061 1.34493 0.90464 1.25800 0.98401 1.01913 0.98617 1.70247 1.19388 1.27337 1.41693 0.85274 0.78693 0.79904 0.76669 1.21141 1.22716 1.18936 1.20131 0.97127 0.87320 0.90150 1.20984 0.92805 0.92743 1.00225 1.20965 0.98506 1.01027 0.94903 1.21383 0.99336 0.97861 0.94214 1.17776 0.93604 1.03046 0.85388 1.84849 1.79240 1.45393 1.21327 1.19502 0.91024 0.93642 0.91408 1.86032 1.30679 1.64542 1.42004 1.22447 0.84144 0.97623 0.94676 1.22069 0.89712 1.03243 1.03604 1.23105 0.97696 0.98804 0.99056 1.23184 0.98501 0.98974 1.01519 1.21050 1.01664 1.04231 0.94167 0.98520 0.96061 0.95000 0.94490 0.91489 0.91215 0.85523 0.83178 0.74421 0.90602 0.93191 0.86530 0.86166 0.87967 0.89451 0.87284 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 9.01 127.77 1.15 10.02 16 2 N -0.61 -29.97 2.91 -731.28 -2.13 -32.09 16 3 C -0.26 -13.80 9.67 84.03 0.81 -12.99 16 4 H 0.08 3.98 7.84 -2.91 -0.02 3.96 16 5 C -0.05 -2.94 5.13 84.86 0.44 -2.51 16 6 N -0.94 -56.60 10.59 21.65 0.23 -56.37 16 7 Si 0.97 45.27 29.57 68.60 2.03 47.30 16 8 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 9 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 C 0.18 7.04 5.83 85.63 0.50 7.54 16 12 C -0.06 -2.49 5.46 -19.86 -0.11 -2.60 16 13 C -0.13 -5.00 9.69 22.27 0.22 -4.79 16 14 C -0.11 -3.70 9.98 22.35 0.22 -3.47 16 15 C 0.05 1.65 6.72 22.57 0.15 1.80 16 16 O -0.50 -15.23 13.29 -79.55 -1.06 -16.28 16 17 C 0.09 3.25 6.70 22.57 0.15 3.40 16 18 O -0.32 -10.61 9.92 -79.61 -0.79 -11.40 16 19 C 0.09 2.31 5.02 71.98 0.36 2.67 16 20 C -0.17 -3.60 6.06 -10.80 -0.07 -3.67 16 21 C -0.15 -2.39 10.25 30.60 0.31 -2.08 16 22 C -0.18 -3.61 10.18 30.59 0.31 -3.30 16 23 C -0.19 -7.04 8.69 22.35 0.19 -6.85 16 24 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 25 H 0.02 1.13 7.19 -2.39 -0.02 1.11 16 26 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 27 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 28 H 0.07 2.48 7.97 -2.39 -0.02 2.46 16 29 H 0.07 2.40 7.81 -2.38 -0.02 2.38 16 30 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 32 H 0.40 7.79 9.06 -74.06 -0.67 7.12 16 33 H 0.08 1.81 7.66 -2.39 -0.02 1.79 16 34 H 0.05 1.47 7.40 -2.39 -0.02 1.46 16 35 H 0.12 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.90 8.03 -2.39 -0.02 1.88 16 39 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.13 4.42 6.30 -2.91 -0.02 4.40 16 Total: -1.00 -68.84 337.51 3.30 -65.54 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.37 Total: 20.14 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.65 Total: -16.83 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -1.90 Total: -88.46 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.85 Total: -27.69 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.84 3.30 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233227288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.051 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds