Wall clock time and date at job start Mon Mar 30 2020 01:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99851 * 2 1 4 4 O 1.21593 * 119.99984 * 359.97438 * 3 2 1 5 5 C 1.47605 * 120.00286 * 180.02562 * 3 2 1 6 6 C 1.39754 * 120.08325 * 359.96818 * 5 3 2 7 7 C 1.37689 * 119.90853 * 179.76991 * 6 5 3 8 8 C 1.39019 * 120.08547 * 0.51159 * 7 6 5 9 9 O 1.35705 * 119.90756 * 179.76257 * 8 7 6 10 10 C 1.42905 * 117.00340 * 359.72592 * 9 8 7 11 11 C 1.38975 * 120.17725 * 359.49085 * 8 7 6 12 12 C 1.50703 * 119.95548 * 180.27923 * 11 8 7 13 13 C 1.52998 * 109.47357 * 84.99383 * 12 11 8 14 14 C 1.52994 * 109.47011 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46815 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00669 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99764 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46947 * 89.99790 * 19 17 15 21 21 H 1.48497 * 109.47114 * 209.99736 * 19 17 15 22 22 H 1.48494 * 109.47083 * 330.00050 * 19 17 15 23 23 C 1.37724 * 120.08818 * 0.25042 * 11 8 7 24 24 H 1.09004 * 109.47509 * 300.00443 * 1 2 3 25 25 H 1.08996 * 109.47374 * 60.00299 * 1 2 3 26 26 H 1.09006 * 109.47114 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00052 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.04632 * 0.05131 * 6 5 3 29 29 H 1.07995 * 119.95530 * 180.25137 * 7 6 5 30 30 H 1.09001 * 109.47103 * 300.00225 * 10 9 8 31 31 H 1.09004 * 109.47054 * 59.99729 * 10 9 8 32 32 H 1.09000 * 109.47187 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47076 * 204.99698 * 12 11 8 34 34 H 1.09005 * 109.46673 * 324.99334 * 12 11 8 35 35 H 1.08998 * 109.47285 * 300.00187 * 13 12 11 36 36 H 1.08999 * 109.46765 * 59.99837 * 13 12 11 37 37 H 1.08998 * 109.47413 * 300.00310 * 14 13 12 38 38 H 1.09004 * 109.46930 * 60.00644 * 14 13 12 39 39 H 0.97006 * 119.99795 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.04260 * 179.97438 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2202 -0.0005 5 6 3.6149 1.1673 -0.0006 6 6 4.3155 -0.0419 -0.0004 7 6 5.6924 -0.0376 -0.0058 8 6 6.3855 1.1674 -0.0005 9 8 7.7426 1.1674 -0.0009 10 6 8.3914 -0.1059 -0.0008 11 6 5.6925 2.3720 -0.0006 12 6 6.4489 3.6754 -0.0013 13 6 6.8132 4.0530 -1.4385 14 6 7.5807 5.3765 -1.4391 15 6 7.9400 5.7481 -2.8547 16 1 7.6497 5.1048 -3.6722 17 6 8.6395 6.9093 -3.1063 18 7 8.9926 7.6930 -2.1108 19 14 9.0843 7.3703 -4.8610 20 1 7.9959 8.1926 -5.4478 21 1 10.3489 8.1488 -4.8628 22 1 9.2618 6.1359 -5.6672 23 6 4.3152 2.3762 -0.0006 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9500 -0.8401 0.0004 28 1 3.7777 -0.9785 -0.0008 29 1 6.2345 -0.9716 -0.0098 30 1 8.0988 -0.6627 0.8894 31 1 8.0983 -0.6631 -0.8906 32 1 9.4720 0.0370 -0.0016 33 1 5.8259 4.4573 0.4330 34 1 7.3596 3.5672 0.5880 35 1 7.4362 3.2711 -1.8728 36 1 5.9026 4.1611 -2.0276 37 1 6.9573 6.1582 -1.0050 38 1 8.4913 5.2688 -0.8499 39 1 9.4850 8.5099 -2.2878 40 1 3.7774 3.3127 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:44 Heat of formation + Delta-G solvation = -67.620010 kcal Electronic energy + Delta-G solvation = -20787.689512 eV Core-core repulsion = 17567.138946 eV Total energy + Delta-G solvation = -3220.550565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57453 -39.45945 -37.18959 -34.95876 -34.60531 -32.66855 -30.54640 -30.48798 -27.85833 -27.14762 -26.21193 -23.74000 -22.87946 -21.68685 -20.43241 -19.92049 -18.10366 -17.67814 -16.71287 -16.14064 -15.79050 -15.55794 -15.29677 -14.76076 -14.39093 -14.22658 -14.10792 -13.36061 -13.31037 -13.24481 -12.75300 -12.66097 -12.51490 -12.08150 -11.94365 -11.74385 -11.15546 -11.11455 -10.93318 -10.68958 -10.60951 -10.39716 -10.05238 -9.54463 -9.36047 -9.31192 -9.05538 -8.76737 -8.26140 -8.09095 -5.91630 -3.93156 0.89646 1.31365 2.82836 3.03787 3.25093 3.37346 3.43006 3.46797 3.83509 4.52389 4.55350 4.62297 4.74278 4.94172 4.99764 5.05834 5.15439 5.26025 5.32457 5.40903 5.43947 5.52896 5.62048 5.78659 5.88113 6.12428 6.16285 6.18308 6.23730 6.39487 6.50747 6.74567 6.93515 7.02999 7.25226 7.29019 7.36553 7.78441 7.95197 8.10033 8.10346 8.53263 9.14095 9.70110 11.19778 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.003803 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.674980 B = 7360.899373 C = 8431.333525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.738 5.738 3 C 0.563 3.437 4 O -0.537 6.537 5 C -0.180 4.180 6 C -0.058 4.058 7 C -0.219 4.219 8 C 0.158 3.842 9 O -0.299 6.299 10 C 0.025 3.975 11 C -0.104 4.104 12 C -0.076 4.076 13 C -0.101 4.101 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.020 4.020 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.400 0.600 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.040 -22.124 6.978 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.390 5.390 3 C 0.352 3.648 4 O -0.414 6.414 5 C -0.183 4.183 6 C -0.077 4.077 7 C -0.238 4.238 8 C 0.112 3.888 9 O -0.210 6.210 10 C -0.070 4.070 11 C -0.104 4.104 12 C -0.113 4.113 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.039 4.039 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.234 0.766 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.269 -21.043 7.013 24.443 hybrid contribution 0.484 -0.541 -0.994 1.231 sum -9.785 -21.584 6.019 24.451 Atomic orbital electron populations 1.21525 0.79460 1.02047 1.02507 1.45701 1.07723 1.08664 1.76931 1.18270 0.87363 0.83533 0.75623 1.90791 1.70031 1.31118 1.49495 1.19675 0.92254 0.94420 1.11967 1.20877 0.93588 0.96553 0.96637 1.21088 0.94992 0.97062 1.10611 1.19184 0.82749 0.93536 0.93365 1.86185 1.16117 1.31391 1.87354 1.23112 0.98491 0.84358 1.01042 1.19585 0.92917 0.94490 1.03436 1.20660 0.99100 0.91226 1.00357 1.21593 0.99822 1.00107 0.92318 1.19105 0.94957 0.90642 0.96852 1.21280 1.34918 1.06223 0.93115 0.92809 1.25025 0.96089 0.96536 0.96883 1.69974 1.39660 1.13305 1.30689 0.86620 0.77813 0.78467 0.85254 1.20697 1.21286 1.19943 1.21050 0.92266 0.97891 0.92685 0.92174 0.92114 0.90762 0.76587 0.85934 0.85055 0.92776 0.92592 0.87981 0.91233 0.90811 0.93250 0.93513 0.96607 0.96548 0.93109 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.31 16 2 N -0.74 -6.75 5.66 -68.12 -0.39 -7.13 16 3 C 0.56 7.60 7.76 -12.44 -0.10 7.51 16 4 O -0.54 -9.34 16.34 5.28 0.09 -9.26 16 5 C -0.18 -2.38 5.87 -104.96 -0.62 -3.00 16 6 C -0.06 -0.60 9.53 -39.22 -0.37 -0.97 16 7 C -0.22 -2.43 9.01 -39.49 -0.36 -2.78 16 8 C 0.16 2.27 6.67 -39.02 -0.26 2.01 16 9 O -0.30 -4.29 9.61 -18.82 -0.18 -4.47 16 10 C 0.03 0.23 9.81 101.05 0.99 1.22 16 11 C -0.10 -1.67 5.14 -104.54 -0.54 -2.20 16 12 C -0.08 -1.40 5.06 -27.88 -0.14 -1.54 16 13 C -0.10 -2.21 5.13 -26.74 -0.14 -2.35 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 19 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.02 -0.31 9.21 -39.22 -0.36 -0.67 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.40 2.39 6.85 -40.82 -0.28 2.11 16 28 H 0.12 0.79 6.40 -52.49 -0.34 0.45 16 29 H 0.13 1.07 6.28 -52.49 -0.33 0.74 16 30 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.45 7.64 -51.93 -0.40 0.05 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 34 H 0.07 1.36 7.68 -51.93 -0.40 0.97 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.14 2.29 7.64 -52.49 -0.40 1.89 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -35.55 338.60 -7.34 -42.90 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.88 Total: -2.40 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.80 Total: -15.04 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.35 Total: -34.10 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.09 Total: -13.73 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.55 -7.34 -42.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.725 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds