Wall clock time and date at job start Mon Mar 30 2020 01:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99851 * 2 1 4 4 O 1.21593 * 119.99984 * 359.97438 * 3 2 1 5 5 C 1.47605 * 120.00286 * 180.02562 * 3 2 1 6 6 C 1.39754 * 120.08325 * 359.96818 * 5 3 2 7 7 C 1.37689 * 119.90853 * 179.76991 * 6 5 3 8 8 C 1.39019 * 120.08547 * 0.51159 * 7 6 5 9 9 O 1.35705 * 119.90756 * 179.76257 * 8 7 6 10 10 C 1.42905 * 117.00340 * 359.72592 * 9 8 7 11 11 C 1.38975 * 120.17725 * 359.49085 * 8 7 6 12 12 C 1.50703 * 119.95548 * 180.27923 * 11 8 7 13 13 C 1.52998 * 109.47357 * 84.99383 * 12 11 8 14 14 C 1.52994 * 109.47011 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46815 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00669 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99764 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46947 * 89.99790 * 19 17 15 21 21 H 1.48497 * 109.47114 * 209.99736 * 19 17 15 22 22 H 1.48494 * 109.47083 * 330.00050 * 19 17 15 23 23 C 1.37724 * 120.08818 * 0.25042 * 11 8 7 24 24 H 1.09004 * 109.47509 * 300.00443 * 1 2 3 25 25 H 1.08996 * 109.47374 * 60.00299 * 1 2 3 26 26 H 1.09006 * 109.47114 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00052 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.04632 * 0.05131 * 6 5 3 29 29 H 1.07995 * 119.95530 * 180.25137 * 7 6 5 30 30 H 1.09001 * 109.47103 * 300.00225 * 10 9 8 31 31 H 1.09004 * 109.47054 * 59.99729 * 10 9 8 32 32 H 1.09000 * 109.47187 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47076 * 204.99698 * 12 11 8 34 34 H 1.09005 * 109.46673 * 324.99334 * 12 11 8 35 35 H 1.08998 * 109.47285 * 300.00187 * 13 12 11 36 36 H 1.08999 * 109.46765 * 59.99837 * 13 12 11 37 37 H 1.08998 * 109.47413 * 300.00310 * 14 13 12 38 38 H 1.09004 * 109.46930 * 60.00644 * 14 13 12 39 39 H 0.97006 * 119.99795 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.04260 * 179.97438 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2202 -0.0005 5 6 3.6149 1.1673 -0.0006 6 6 4.3155 -0.0419 -0.0004 7 6 5.6924 -0.0376 -0.0058 8 6 6.3855 1.1674 -0.0005 9 8 7.7426 1.1674 -0.0009 10 6 8.3914 -0.1059 -0.0008 11 6 5.6925 2.3720 -0.0006 12 6 6.4489 3.6754 -0.0013 13 6 6.8132 4.0530 -1.4385 14 6 7.5807 5.3765 -1.4391 15 6 7.9400 5.7481 -2.8547 16 1 7.6497 5.1048 -3.6722 17 6 8.6395 6.9093 -3.1063 18 7 8.9926 7.6930 -2.1108 19 14 9.0843 7.3703 -4.8610 20 1 7.9959 8.1926 -5.4478 21 1 10.3489 8.1488 -4.8628 22 1 9.2618 6.1359 -5.6672 23 6 4.3152 2.3762 -0.0006 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9500 -0.8401 0.0004 28 1 3.7777 -0.9785 -0.0008 29 1 6.2345 -0.9716 -0.0098 30 1 8.0988 -0.6627 0.8894 31 1 8.0983 -0.6631 -0.8906 32 1 9.4720 0.0370 -0.0016 33 1 5.8259 4.4573 0.4330 34 1 7.3596 3.5672 0.5880 35 1 7.4362 3.2711 -1.8728 36 1 5.9026 4.1611 -2.0276 37 1 6.9573 6.1582 -1.0050 38 1 8.4913 5.2688 -0.8499 39 1 9.4850 8.5099 -2.2878 40 1 3.7774 3.3127 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:43 Heat of formation + Delta-G solvation = -91.922229 kcal Electronic energy + Delta-G solvation = -20788.743335 eV Core-core repulsion = 17567.138946 eV Total energy + Delta-G solvation = -3221.604389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58520 -40.45673 -38.22895 -36.51025 -35.71732 -34.57846 -32.12717 -31.51263 -28.73728 -28.62588 -27.20601 -25.46844 -23.94144 -22.89699 -22.01123 -21.20913 -19.12663 -18.64708 -18.33905 -17.70385 -16.71419 -16.53771 -16.51637 -16.21156 -15.71195 -15.60380 -15.15032 -14.66196 -14.53100 -14.36144 -14.02818 -13.91532 -13.60313 -13.31774 -13.14537 -13.03542 -12.80011 -12.53799 -12.50092 -12.41485 -11.98353 -11.89397 -11.47734 -11.32822 -11.20034 -11.04953 -10.55748 -10.20870 -9.90573 -9.15684 -8.19861 -6.31535 -0.12168 0.30125 1.38283 1.40815 1.51869 1.79915 2.22554 2.37031 2.40833 2.81006 3.12313 3.64982 3.78354 3.80086 4.13115 4.16236 4.29666 4.42210 4.45467 4.46005 4.54328 4.56273 4.63692 4.75142 4.78949 4.88617 4.96446 5.01216 5.13371 5.19298 5.24589 5.28217 5.38600 5.40736 5.52148 5.68804 5.77625 5.85646 6.25390 6.42959 6.52683 6.84587 7.20670 7.37208 8.92078 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.003803 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.674980 B = 7360.899373 C = 8431.333525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.558 3.442 4 O -0.589 6.589 5 C -0.191 4.191 6 C -0.034 4.034 7 C -0.208 4.208 8 C 0.152 3.848 9 O -0.331 6.331 10 C 0.014 3.986 11 C -0.133 4.133 12 C -0.065 4.065 13 C -0.083 4.083 14 C 0.026 3.974 15 C -0.545 4.545 16 H 0.057 0.943 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.036 4.036 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.118 0.882 27 H 0.419 0.581 28 H 0.174 0.826 29 H 0.172 0.828 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.041 0.959 37 H -0.010 1.010 38 H -0.007 1.007 39 H 0.264 0.736 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 -25.920 6.084 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.369 5.369 3 C 0.347 3.653 4 O -0.471 6.471 5 C -0.194 4.194 6 C -0.052 4.052 7 C -0.226 4.226 8 C 0.105 3.895 9 O -0.244 6.244 10 C -0.080 4.080 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.121 4.121 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.075 0.925 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.055 4.055 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.137 0.863 27 H 0.257 0.743 28 H 0.191 0.809 29 H 0.190 0.810 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.008 0.992 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.585 -24.911 6.126 27.751 hybrid contribution 0.581 0.546 -0.661 1.035 sum -10.004 -24.365 5.465 26.900 Atomic orbital electron populations 1.21723 0.78240 1.04600 1.01466 1.45578 1.08534 1.08086 1.74697 1.18418 0.87535 0.84018 0.75335 1.90768 1.70893 1.33213 1.52227 1.19757 0.92387 0.94746 1.12530 1.21376 0.93504 0.97146 0.93159 1.21501 0.95296 0.97183 1.08613 1.19326 0.83113 0.93929 0.93157 1.86143 1.16311 1.34604 1.87322 1.23457 0.98691 0.82873 1.03004 1.19289 0.93081 0.94040 1.06931 1.20376 0.99135 0.93141 0.97572 1.21326 0.98602 0.97249 0.94918 1.19004 0.94016 0.92522 0.95580 1.21691 1.35556 1.06924 0.94077 0.92505 1.26022 0.95673 0.96266 1.01985 1.70111 1.40131 1.13804 1.33341 0.85418 0.77804 0.78536 0.79118 1.19788 1.20370 1.18689 1.20923 0.92181 0.98389 0.93987 0.93145 0.93360 0.86334 0.74332 0.80870 0.81028 0.90292 0.90918 0.87265 0.91963 0.91502 0.93411 0.94010 0.99184 0.98890 0.92710 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.70 127.77 1.37 2.42 16 2 N -0.72 -11.03 5.66 -487.69 -2.76 -13.80 16 3 C 0.56 14.59 7.76 86.72 0.67 15.27 16 4 O -0.59 -21.22 16.34 -4.01 -0.07 -21.29 16 5 C -0.19 -4.84 5.87 -20.08 -0.12 -4.95 16 6 C -0.03 -0.56 9.53 22.51 0.21 -0.34 16 7 C -0.21 -3.79 9.01 22.33 0.20 -3.59 16 8 C 0.15 4.15 6.67 22.63 0.15 4.31 16 9 O -0.33 -9.21 9.61 -90.25 -0.87 -10.08 16 10 C 0.01 0.21 9.81 113.37 1.11 1.33 16 11 C -0.13 -4.41 5.14 -19.81 -0.10 -4.51 16 12 C -0.06 -2.56 5.06 29.85 0.15 -2.41 16 13 C -0.08 -3.87 5.13 30.59 0.16 -3.71 16 14 C 0.03 1.48 4.97 29.85 0.15 1.62 16 15 C -0.54 -33.06 9.11 25.60 0.23 -32.82 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 18 N -0.93 -59.23 13.29 21.45 0.28 -58.95 16 19 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.04 -1.15 9.21 22.50 0.21 -0.94 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.42 2.98 6.85 -92.71 -0.64 2.35 16 28 H 0.17 1.07 6.40 -2.91 -0.02 1.05 16 29 H 0.17 1.75 6.28 -2.91 -0.02 1.73 16 30 H 0.08 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.07 0.89 7.64 -2.38 -0.02 0.87 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 2.45 8.05 -2.39 -0.02 2.43 16 34 H 0.07 2.66 7.68 -2.38 -0.02 2.64 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 40 H 0.12 4.25 7.64 -2.91 -0.02 4.23 16 Total: -1.00 -82.35 338.60 3.88 -78.47 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.40 Total: 5.49 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 4.86 Total: -27.99 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -2.48 Total: -72.74 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.93 Total: -31.36 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -82.35 3.88 -78.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.456 kcal (2) G-P(sol) polarization free energy of solvation -82.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds