Wall clock time and date at job start Mon Mar 30 2020 02:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00261 * 2 1 4 4 N 1.46499 * 109.47100 * 79.99303 * 3 2 1 5 5 C 1.34783 * 119.99687 * 95.00237 * 4 3 2 6 6 O 1.21551 * 120.00239 * 0.02562 * 5 4 3 7 7 C 1.47846 * 119.99829 * 179.97438 * 5 4 3 8 8 C 1.39597 * 120.14546 * 359.72440 * 7 5 4 9 9 C 1.37936 * 119.85699 * 179.79026 * 8 7 5 10 10 C 1.38386 * 120.13946 * 0.48913 * 9 8 7 11 11 C 1.38333 * 120.29423 * 359.73795 * 10 9 8 12 12 C 1.50698 * 119.92855 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47171 * 270.02727 * 12 11 10 14 14 C 1.53000 * 109.46995 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47159 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99215 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00192 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99884 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99884 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46782 * 90.00775 * 19 17 15 21 21 H 1.48498 * 109.46896 * 210.00102 * 19 17 15 22 22 H 1.48497 * 109.47241 * 330.00269 * 19 17 15 23 23 C 1.37978 * 120.14779 * 0.02860 * 11 10 9 24 24 H 1.08998 * 109.47857 * 300.00334 * 1 2 3 25 25 H 1.09003 * 109.46754 * 60.00585 * 1 2 3 26 26 H 1.08998 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47259 * 199.99703 * 3 2 1 28 28 H 1.09001 * 109.47074 * 319.99725 * 3 2 1 29 29 H 0.96993 * 120.00397 * 275.00175 * 4 3 2 30 30 H 1.08011 * 120.07288 * 0.02562 * 8 7 5 31 31 H 1.07998 * 119.93079 * 180.20620 * 9 8 7 32 32 H 1.08006 * 119.85196 * 179.76884 * 10 9 8 33 33 H 1.08998 * 109.47238 * 30.02156 * 12 11 10 34 34 H 1.09000 * 109.47565 * 150.02553 * 12 11 10 35 35 H 1.09004 * 109.46782 * 299.99436 * 13 12 11 36 36 H 1.08994 * 109.47443 * 59.99495 * 13 12 11 37 37 H 1.08998 * 109.47270 * 299.99341 * 14 13 12 38 38 H 1.08996 * 109.47417 * 60.00237 * 14 13 12 39 39 H 0.96999 * 119.99745 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.07704 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 1.9896 1.8491 1.3602 5 6 3.0707 1.7187 2.1545 6 8 4.0628 1.1503 1.7421 7 6 3.0501 2.2679 3.5270 8 6 1.9147 2.9272 4.0014 9 6 1.9004 3.4335 5.2844 10 6 3.0121 3.2979 6.0973 11 6 4.1421 2.6498 5.6318 12 6 5.3479 2.5063 6.5243 13 6 6.2708 3.7115 6.3324 14 6 7.4953 3.5654 7.2381 15 6 8.4046 4.7522 7.0487 16 1 8.1361 5.5323 6.3516 17 6 9.5797 4.8415 7.7643 18 7 10.3729 5.8774 7.5993 19 14 10.0442 3.4918 8.9693 20 1 10.8413 2.4542 8.2670 21 1 10.8495 4.0707 10.0745 22 1 8.8113 2.8777 9.5241 23 6 4.1678 2.1346 4.3521 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.0402 1.2445 -0.3514 28 1 1.4389 1.9575 -0.6606 29 1 1.1981 2.3030 1.6892 30 1 1.0479 3.0372 3.3664 31 1 1.0215 3.9408 5.6537 32 1 2.9972 3.6994 7.0998 33 1 5.0262 2.4571 7.5645 34 1 5.8843 1.5932 6.2663 35 1 6.5926 3.7607 5.2921 36 1 5.7344 4.6246 6.5903 37 1 7.1739 3.5160 8.2784 38 1 8.0315 2.6524 6.9796 39 1 11.1994 5.9404 8.1031 40 1 5.0507 1.6292 3.9897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:33 Heat of formation + Delta-G solvation = -72.730665 kcal Electronic energy + Delta-G solvation = -20294.194443 eV Core-core repulsion = 17073.422263 eV Total energy + Delta-G solvation = -3220.772180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44069 -38.91474 -37.80402 -35.00221 -34.18295 -32.61071 -31.21435 -30.69114 -27.93799 -27.15519 -25.70817 -23.73471 -23.08001 -21.62892 -20.43415 -20.01242 -18.20722 -17.13223 -16.79449 -16.62160 -16.30418 -15.59041 -15.36761 -14.92074 -14.68644 -14.29928 -14.03534 -13.85980 -13.60020 -13.23306 -12.95028 -12.53350 -12.35877 -11.90350 -11.83459 -11.75710 -11.51541 -11.21488 -10.94939 -10.72729 -10.68437 -10.06346 -9.89392 -9.78337 -9.69564 -9.67185 -9.16693 -8.99777 -8.62459 -8.50536 -6.00992 -3.98791 0.78582 1.33177 2.69196 2.85143 3.33649 3.40607 3.44133 3.52063 3.84001 4.41804 4.48248 4.53031 4.67690 4.82354 4.86549 4.89445 5.05787 5.18612 5.25795 5.30846 5.33052 5.38873 5.59292 5.77465 5.91300 5.94471 5.96680 6.21927 6.24996 6.30185 6.42348 6.61194 6.69568 6.74140 6.85762 6.95110 7.14920 7.34350 7.46763 7.83058 7.95392 8.57836 9.04332 9.61620 11.12617 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029532 B = 0.002905 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.884965 B = 9637.722590 C =10071.598900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.273 3.727 4 N -0.744 5.744 5 C 0.569 3.431 6 O -0.525 6.525 7 C -0.141 4.141 8 C -0.100 4.100 9 C -0.126 4.126 10 C -0.090 4.090 11 C -0.072 4.072 12 C -0.089 4.089 13 C -0.096 4.096 14 C -0.015 4.015 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.055 4.055 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.398 0.602 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.262 0.738 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.744 -8.282 -11.327 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.306 6.306 3 C 0.112 3.888 4 N -0.406 5.406 5 C 0.357 3.643 6 O -0.401 6.401 7 C -0.144 4.144 8 C -0.118 4.118 9 C -0.144 4.144 10 C -0.108 4.108 11 C -0.072 4.072 12 C -0.126 4.126 13 C -0.134 4.134 14 C -0.052 4.052 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.074 4.074 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.093 0.907 29 H 0.233 0.767 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.748 -8.848 -11.641 27.889 hybrid contribution -0.338 -0.062 0.803 0.874 sum -24.086 -8.910 -10.838 27.874 Atomic orbital electron populations 1.22824 0.81312 1.03129 0.99831 1.88139 1.19839 1.29018 1.93617 1.22642 1.01008 0.82701 0.82478 1.46550 1.17757 1.59854 1.16429 1.18413 0.82658 0.78128 0.85053 1.90796 1.32649 1.41808 1.74856 1.19813 0.96412 1.04073 0.94100 1.21115 0.96713 0.97768 0.96238 1.21040 0.98785 1.00682 0.93918 1.21355 0.92460 0.96833 1.00156 1.20169 0.95997 0.96381 0.94659 1.20868 0.93065 1.00899 0.97794 1.21465 0.95955 0.95071 1.00860 1.19601 0.93384 0.97335 0.94915 1.21164 1.04052 1.05984 1.24544 0.91098 1.25050 0.96225 0.95602 0.96766 1.69923 1.12595 1.29591 1.42310 0.86761 0.78773 0.82433 0.81210 1.20294 1.21460 1.18997 1.21236 0.97240 0.96501 0.92423 0.94086 0.93769 0.89546 0.86006 0.90682 0.76741 0.86306 0.85581 0.85363 0.91074 0.91038 0.92602 0.92657 0.96614 0.96985 0.92794 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.88 101.05 1.10 1.25 16 2 O -0.39 -3.88 10.93 -35.23 -0.39 -4.26 16 3 C 0.27 2.28 7.13 59.85 0.43 2.70 16 4 N -0.74 -6.71 5.48 -66.04 -0.36 -7.07 16 5 C 0.57 7.48 7.77 -12.33 -0.10 7.38 16 6 O -0.53 -8.95 15.85 5.32 0.08 -8.87 16 7 C -0.14 -1.80 5.87 -104.97 -0.62 -2.41 16 8 C -0.10 -0.98 9.54 -39.19 -0.37 -1.35 16 9 C -0.13 -1.26 10.03 -39.64 -0.40 -1.66 16 10 C -0.09 -1.09 9.69 -39.49 -0.38 -1.47 16 11 C -0.07 -1.03 5.13 -104.68 -0.54 -1.56 16 12 C -0.09 -1.41 5.34 -27.88 -0.15 -1.56 16 13 C -0.10 -1.90 5.14 -26.73 -0.14 -2.04 16 14 C -0.02 -0.36 4.04 -27.88 -0.11 -0.47 16 15 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 16 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 19 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 23 C -0.06 -0.80 9.24 -39.18 -0.36 -1.17 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.04 0.18 8.09 -51.93 -0.42 -0.24 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.12 1.20 7.28 -51.93 -0.38 0.82 16 28 H 0.08 0.36 7.93 -51.93 -0.41 -0.05 16 29 H 0.40 2.35 6.86 -40.82 -0.28 2.07 16 30 H 0.12 0.74 6.41 -52.48 -0.34 0.40 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.14 2.11 7.65 -52.49 -0.40 1.71 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -35.25 339.51 -7.47 -42.71 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.96 Total: -1.43 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.07 Total: -15.96 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.41 Total: -34.69 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.30 Total: -13.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.25 -7.47 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.018 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds