Wall clock time and date at job start Mon Mar 30 2020 02:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00261 * 2 1 4 4 N 1.46499 * 109.47100 * 79.99303 * 3 2 1 5 5 C 1.34783 * 119.99687 * 95.00237 * 4 3 2 6 6 O 1.21551 * 120.00239 * 0.02562 * 5 4 3 7 7 C 1.47846 * 119.99829 * 179.97438 * 5 4 3 8 8 C 1.39597 * 120.14546 * 359.72440 * 7 5 4 9 9 C 1.37936 * 119.85699 * 179.79026 * 8 7 5 10 10 C 1.38386 * 120.13946 * 0.48913 * 9 8 7 11 11 C 1.38333 * 120.29423 * 359.73795 * 10 9 8 12 12 C 1.50698 * 119.92855 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47171 * 270.02727 * 12 11 10 14 14 C 1.53000 * 109.46995 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47159 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99215 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00192 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99884 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99884 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46782 * 90.00775 * 19 17 15 21 21 H 1.48498 * 109.46896 * 210.00102 * 19 17 15 22 22 H 1.48497 * 109.47241 * 330.00269 * 19 17 15 23 23 C 1.37978 * 120.14779 * 0.02860 * 11 10 9 24 24 H 1.08998 * 109.47857 * 300.00334 * 1 2 3 25 25 H 1.09003 * 109.46754 * 60.00585 * 1 2 3 26 26 H 1.08998 * 109.47214 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47259 * 199.99703 * 3 2 1 28 28 H 1.09001 * 109.47074 * 319.99725 * 3 2 1 29 29 H 0.96993 * 120.00397 * 275.00175 * 4 3 2 30 30 H 1.08011 * 120.07288 * 0.02562 * 8 7 5 31 31 H 1.07998 * 119.93079 * 180.20620 * 9 8 7 32 32 H 1.08006 * 119.85196 * 179.76884 * 10 9 8 33 33 H 1.08998 * 109.47238 * 30.02156 * 12 11 10 34 34 H 1.09000 * 109.47565 * 150.02553 * 12 11 10 35 35 H 1.09004 * 109.46782 * 299.99436 * 13 12 11 36 36 H 1.08994 * 109.47443 * 59.99495 * 13 12 11 37 37 H 1.08998 * 109.47270 * 299.99341 * 14 13 12 38 38 H 1.08996 * 109.47417 * 60.00237 * 14 13 12 39 39 H 0.96999 * 119.99745 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.07704 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 1.9896 1.8491 1.3602 5 6 3.0707 1.7187 2.1545 6 8 4.0628 1.1503 1.7421 7 6 3.0501 2.2679 3.5270 8 6 1.9147 2.9272 4.0014 9 6 1.9004 3.4335 5.2844 10 6 3.0121 3.2979 6.0973 11 6 4.1421 2.6498 5.6318 12 6 5.3479 2.5063 6.5243 13 6 6.2708 3.7115 6.3324 14 6 7.4953 3.5654 7.2381 15 6 8.4046 4.7522 7.0487 16 1 8.1361 5.5323 6.3516 17 6 9.5797 4.8415 7.7643 18 7 10.3729 5.8774 7.5993 19 14 10.0442 3.4918 8.9693 20 1 10.8413 2.4542 8.2670 21 1 10.8495 4.0707 10.0745 22 1 8.8113 2.8777 9.5241 23 6 4.1678 2.1346 4.3521 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.0402 1.2445 -0.3514 28 1 1.4389 1.9575 -0.6606 29 1 1.1981 2.3030 1.6892 30 1 1.0479 3.0372 3.3664 31 1 1.0215 3.9408 5.6537 32 1 2.9972 3.6994 7.0998 33 1 5.0262 2.4571 7.5645 34 1 5.8843 1.5932 6.2663 35 1 6.5926 3.7607 5.2921 36 1 5.7344 4.6246 6.5903 37 1 7.1739 3.5160 8.2784 38 1 8.0315 2.6524 6.9796 39 1 11.1994 5.9404 8.1031 40 1 5.0507 1.6292 3.9897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:32 Heat of formation + Delta-G solvation = -98.261915 kcal Electronic energy + Delta-G solvation = -20295.301561 eV Core-core repulsion = 17073.422263 eV Total energy + Delta-G solvation = -3221.879298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37592 -39.80519 -38.60063 -36.52544 -35.18624 -34.47134 -32.30602 -32.05260 -28.95730 -28.29564 -26.43319 -25.26488 -24.03608 -22.73518 -21.91887 -21.24562 -19.19813 -18.73239 -17.89298 -17.49701 -17.14068 -16.44267 -16.41238 -16.19676 -15.86947 -15.64316 -15.19230 -14.97697 -14.78486 -14.51810 -14.20933 -14.07374 -13.40814 -13.27645 -12.90643 -12.74859 -12.65866 -12.41955 -12.34443 -12.23542 -11.77869 -11.49332 -11.43310 -11.35203 -11.32188 -10.91393 -10.76741 -10.61793 -9.91688 -9.66651 -8.29748 -6.34115 -0.15636 0.40593 1.36356 1.37904 1.50400 1.74917 2.05569 2.36481 2.82324 3.02320 3.05562 3.63735 3.76348 3.94705 3.98472 4.14405 4.25310 4.37132 4.44625 4.47001 4.50590 4.53258 4.58122 4.66354 4.83893 4.85981 5.01307 5.05011 5.09174 5.12250 5.19795 5.30757 5.43669 5.53198 5.54645 5.66929 5.71949 5.95612 6.07034 6.28714 6.40442 6.73932 7.07269 7.30430 8.87369 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029532 B = 0.002905 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.884965 B = 9637.722590 C =10071.598900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.424 6.424 3 C 0.269 3.731 4 N -0.724 5.724 5 C 0.564 3.436 6 O -0.578 6.578 7 C -0.155 4.155 8 C -0.082 4.082 9 C -0.118 4.118 10 C -0.093 4.093 11 C -0.092 4.092 12 C -0.078 4.078 13 C -0.087 4.087 14 C -0.013 4.013 15 C -0.535 4.535 16 H 0.027 0.973 17 C 0.000 4.000 18 N -0.954 5.954 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.241 1.241 23 C -0.080 4.080 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.416 0.584 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.016 0.984 39 H 0.266 0.734 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.301 -8.962 -10.527 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.339 6.339 3 C 0.108 3.892 4 N -0.386 5.386 5 C 0.353 3.647 6 O -0.459 6.459 7 C -0.158 4.158 8 C -0.100 4.100 9 C -0.136 4.136 10 C -0.111 4.111 11 C -0.092 4.092 12 C -0.116 4.116 13 C -0.125 4.125 14 C -0.050 4.050 15 C -0.573 4.573 16 H 0.046 0.954 17 C -0.197 4.197 18 N -0.595 5.595 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.164 1.164 23 C -0.099 4.099 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.254 0.746 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.161 0.839 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -27.380 -9.516 -10.858 30.954 hybrid contribution 0.659 0.239 0.436 0.826 sum -26.721 -9.277 -10.422 30.145 Atomic orbital electron populations 1.23047 0.79264 1.03938 1.01501 1.88099 1.22216 1.29808 1.93749 1.22810 1.00723 0.83262 0.82416 1.46408 1.17151 1.58758 1.16245 1.18636 0.82926 0.77549 0.85557 1.90769 1.34824 1.44389 1.75870 1.19907 0.97059 1.05064 0.93796 1.21575 0.96579 0.95140 0.96728 1.21499 0.99158 0.99554 0.93370 1.21636 0.92263 0.95946 1.01265 1.20004 0.96455 0.98454 0.94314 1.20673 0.93099 0.98469 0.99312 1.21287 0.95319 0.97182 0.98670 1.19571 0.94049 0.95022 0.96406 1.21541 1.05393 1.06741 1.23593 0.95446 1.26099 0.96052 0.98441 0.99069 1.70083 1.13367 1.32093 1.43911 0.85592 0.79366 0.78879 0.78413 1.19474 1.20818 1.16440 1.21155 0.97530 0.97832 0.93400 0.92845 0.91573 0.89340 0.88495 0.86301 0.74586 0.81946 0.81606 0.83856 0.89385 0.91359 0.94571 0.92922 0.95433 0.96562 0.92503 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.88 113.37 1.23 1.40 16 2 O -0.42 -7.86 10.93 -148.98 -1.63 -9.49 16 3 C 0.27 4.11 7.13 127.77 0.91 5.02 16 4 N -0.72 -11.64 5.48 -581.60 -3.19 -14.82 16 5 C 0.56 14.80 7.77 86.79 0.67 15.47 16 6 O -0.58 -20.88 15.85 -3.88 -0.06 -20.94 16 7 C -0.16 -3.82 5.87 -20.09 -0.12 -3.94 16 8 C -0.08 -1.30 9.54 22.53 0.21 -1.09 16 9 C -0.12 -1.86 10.03 22.23 0.22 -1.63 16 10 C -0.09 -2.01 9.69 22.33 0.22 -1.79 16 11 C -0.09 -2.58 5.13 -19.90 -0.10 -2.69 16 12 C -0.08 -2.45 5.34 29.85 0.16 -2.30 16 13 C -0.09 -3.52 5.14 30.60 0.16 -3.36 16 14 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 15 C -0.53 -32.08 9.66 25.60 0.25 -31.83 16 16 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 17 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 18 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 19 Si 0.95 45.34 27.47 68.60 1.88 47.22 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 23 C -0.08 -2.41 9.24 22.53 0.21 -2.20 16 24 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.32 8.09 -2.39 -0.02 0.30 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 1.97 7.28 -2.39 -0.02 1.95 16 28 H 0.12 0.76 7.93 -2.39 -0.02 0.74 16 29 H 0.42 3.32 6.86 -92.71 -0.64 2.68 16 30 H 0.16 1.09 6.41 -2.91 -0.02 1.07 16 31 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.09 2.43 8.08 -2.39 -0.02 2.41 16 34 H 0.07 2.14 8.08 -2.39 -0.02 2.13 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 38 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 39 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 40 H 0.11 3.76 7.65 -2.91 -0.02 3.73 16 Total: -1.00 -81.85 339.51 2.26 -79.59 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.34 Total: 8.75 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 4.61 Total: -29.01 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -2.89 Total: -76.13 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.69 Total: -30.43 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -81.85 2.26 -79.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.670 kcal (2) G-P(sol) polarization free energy of solvation -81.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds