Wall clock time and date at job start Mon Mar 30 2020 01:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47467 * 2 1 4 4 C 1.34709 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.21468 * 120.00316 * 0.02562 * 4 3 2 6 6 C 1.47733 * 119.99568 * 179.97438 * 4 3 2 7 7 C 1.39626 * 120.14512 * 179.97438 * 6 4 3 8 8 C 1.37947 * 119.84448 * 179.70064 * 7 6 4 9 9 C 1.38372 * 120.14939 * 0.26453 * 8 7 6 10 10 C 1.50693 * 119.84555 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.46897 * 90.00137 * 10 9 8 12 12 H 1.08998 * 109.46967 * 54.99765 * 11 10 9 13 13 C 1.53002 * 109.46981 * 174.99929 * 11 10 9 14 14 N 1.46500 * 109.46885 * 294.99748 * 11 10 9 15 15 C 1.36938 * 119.99383 * 154.99923 * 14 11 10 16 16 H 1.08000 * 120.00548 * 0.02562 * 15 14 11 17 17 C 1.38819 * 119.99480 * 179.97438 * 15 14 11 18 18 N 1.31617 * 120.00148 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99778 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47047 * 90.00063 * 19 17 15 21 21 H 1.48504 * 109.46868 * 210.00226 * 19 17 15 22 22 H 1.48500 * 109.47057 * 329.99894 * 19 17 15 23 23 C 1.38360 * 120.30170 * 0.02562 * 9 8 7 24 24 C 1.37944 * 120.15600 * 0.02562 * 23 9 8 25 25 H 1.09001 * 109.46964 * 300.00195 * 1 2 3 26 26 H 1.09010 * 109.46714 * 59.99849 * 1 2 3 27 27 H 1.08999 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46964 * 239.99805 * 2 1 3 29 29 H 1.09001 * 109.46869 * 120.00431 * 2 1 3 30 30 H 1.08002 * 120.08162 * 359.97438 * 7 6 4 31 31 H 1.07999 * 119.92426 * 180.27702 * 8 7 6 32 32 H 1.08998 * 109.47515 * 209.99858 * 10 9 8 33 33 H 1.08999 * 109.47649 * 330.00542 * 10 9 8 34 34 H 1.09000 * 109.46973 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.46834 * 299.99576 * 13 11 10 36 36 H 1.08998 * 109.47404 * 60.00104 * 13 11 10 37 37 H 0.96991 * 120.00098 * 334.99896 * 14 11 10 38 38 H 0.97001 * 120.00153 * 180.02562 * 18 17 15 39 39 H 1.08003 * 119.92647 * 180.02562 * 23 9 8 40 40 H 1.07997 * 120.07994 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5453 0.0005 5 8 4.0895 0.5820 0.0005 6 6 3.9143 2.9105 0.0000 7 6 5.2980 3.0969 0.0011 8 6 5.8186 4.3744 -0.0057 9 6 4.9728 5.4695 -0.0080 10 6 5.5489 6.8620 -0.0148 11 6 5.7405 7.3276 -1.4597 12 1 4.7952 7.2456 -1.9962 13 6 6.2072 8.7846 -1.4684 14 7 6.7475 6.4883 -2.1137 15 6 6.7398 6.3453 -3.4756 16 1 5.9917 6.8515 -4.0675 17 6 7.6944 5.5505 -4.0953 18 7 8.6065 4.9340 -3.3740 19 14 7.6844 5.3559 -5.9532 20 1 8.5272 6.4138 -6.5662 21 1 8.2255 4.0209 -6.3140 22 1 6.2926 5.4784 -6.4562 23 6 3.6007 5.2919 -0.0030 24 6 3.0666 4.0200 0.0048 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.9593 2.2430 0.0028 31 1 6.8887 4.5200 -0.0094 32 1 4.8667 7.5400 0.4979 33 1 6.5114 6.8596 0.4967 34 1 6.3432 9.1164 -2.4977 35 1 5.4578 9.4090 -0.9818 36 1 7.1525 8.8666 -0.9319 37 1 7.4196 6.0340 -1.5821 38 1 9.2737 4.3789 -3.8071 39 1 2.9461 6.1510 -0.0053 40 1 1.9954 3.8828 0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257147397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:53 Heat of formation + Delta-G solvation = -64.797617 kcal Electronic energy + Delta-G solvation = -21063.841094 eV Core-core repulsion = 17843.412917 eV Total energy + Delta-G solvation = -3220.428177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42842 -38.85962 -36.56166 -35.85972 -32.79019 -31.94953 -30.97068 -30.66224 -28.64482 -26.70303 -24.00897 -23.56882 -22.30848 -22.29489 -20.57992 -19.74883 -17.87717 -17.21909 -16.85839 -16.53373 -15.24833 -15.08694 -14.53738 -14.25621 -14.21881 -13.71549 -13.58915 -13.30715 -13.15992 -12.94962 -12.58571 -12.28863 -12.15340 -11.83689 -11.75666 -11.59680 -11.50557 -10.91303 -10.79911 -10.68879 -10.62384 -10.60385 -10.33080 -10.29741 -9.98745 -9.63691 -8.90633 -8.64745 -8.40549 -6.93163 -5.74129 -3.01648 0.98066 1.72635 2.67194 2.76040 3.45298 3.50943 3.52294 4.09303 4.61877 4.70708 4.76249 4.84774 5.05538 5.09904 5.18324 5.24353 5.41807 5.54224 5.58185 5.58794 5.69274 5.73489 5.76262 5.83170 5.98725 6.05829 6.18559 6.28582 6.33768 6.36305 6.43262 6.54385 6.61830 6.73323 6.80909 6.98627 7.07747 7.21458 7.73111 7.86066 8.44584 9.56264 10.12593 10.47593 11.48654 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.004637 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.903944 B = 6037.282856 C = 7041.314651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.513 3.487 5 O -0.512 6.512 6 C -0.145 4.145 7 C -0.047 4.047 8 C -0.102 4.102 9 C -0.019 4.019 10 C -0.096 4.096 11 C 0.176 3.824 12 H 0.048 0.952 13 C -0.164 4.164 14 N -0.721 5.721 15 C -0.235 4.235 16 H 0.068 0.932 17 C -0.011 4.011 18 N -0.932 5.932 19 Si 0.902 3.098 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.283 1.283 23 C -0.138 4.138 24 C -0.066 4.066 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.126 0.874 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 -2.905 10.450 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.359 3.641 5 O -0.402 6.402 6 C -0.146 4.146 7 C -0.066 4.066 8 C -0.120 4.120 9 C -0.019 4.019 10 C -0.134 4.134 11 C 0.066 3.934 12 H 0.066 0.934 13 C -0.224 4.224 14 N -0.363 5.363 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.734 3.266 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.209 1.209 23 C -0.156 4.156 24 C -0.084 4.084 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.144 0.856 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.911 -3.242 10.260 17.587 hybrid contribution 0.371 -0.508 -1.086 1.255 sum -13.540 -3.750 9.174 16.779 Atomic orbital electron populations 1.21802 0.92687 1.02843 1.03545 1.22998 0.95233 0.80381 1.02608 1.86544 1.24238 1.32045 1.84525 1.21333 0.80233 0.90188 0.72312 1.90811 1.60352 1.42624 1.46393 1.18955 0.94158 0.89358 1.12154 1.21213 0.92914 0.98203 0.94231 1.21056 1.00681 0.91071 0.99155 1.20163 0.93175 0.95981 0.92548 1.21103 1.00892 0.92024 0.99345 1.20212 0.93543 0.89945 0.89670 0.93363 1.22444 1.00026 0.98462 1.01502 1.42411 1.33682 1.55724 1.04466 1.19195 1.10632 1.23521 0.83284 0.91369 1.24675 0.98240 1.00257 0.97537 1.69632 1.18874 1.35566 1.33976 0.86261 0.77380 0.77035 0.85964 1.21828 1.21841 1.20862 1.20951 0.94764 0.96776 1.03106 1.21261 0.99478 0.91689 0.95950 0.91505 0.91404 0.90337 0.91216 0.91318 0.84978 0.84726 0.90919 0.90789 0.92694 0.94496 0.93434 0.78321 0.93592 0.85641 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.91 9.47 -40.52 -0.38 -5.29 16 4 C 0.51 8.40 7.90 34.61 0.27 8.67 16 5 O -0.51 -9.52 16.14 -19.24 -0.31 -9.83 16 6 C -0.15 -2.38 5.87 -104.98 -0.62 -3.00 16 7 C -0.05 -0.83 9.60 -39.17 -0.38 -1.20 16 8 C -0.10 -1.78 9.07 -39.64 -0.36 -2.14 16 9 C -0.02 -0.30 4.96 -104.53 -0.52 -0.82 16 10 C -0.10 -1.46 4.88 -27.88 -0.14 -1.60 16 11 C 0.18 3.32 2.88 -67.92 -0.20 3.12 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 14 N -0.72 -17.25 4.57 -53.42 -0.24 -17.50 16 15 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 19 Si 0.90 22.58 29.55 -169.99 -5.02 17.55 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 C -0.14 -1.99 9.68 -39.64 -0.38 -2.37 16 24 C -0.07 -0.95 9.62 -39.17 -0.38 -1.32 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.13 2.29 7.65 -52.49 -0.40 1.89 16 31 H 0.13 2.44 7.56 -52.49 -0.40 2.04 16 32 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.38 9.64 7.00 -40.82 -0.29 9.35 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.13 1.57 7.61 -52.49 -0.40 1.17 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -31.52 343.36 -8.12 -39.64 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.09 Total: 7.20 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.97 Total: -9.95 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.48 Total: -44.49 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.69 Total: -15.13 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.52 -8.12 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257147397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.155 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds