Wall clock time and date at job start Mon Mar 30 2020 01:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45208 * 109.46664 * 2 1 4 4 C 1.34713 * 116.99431 * 180.02562 * 3 2 1 5 5 O 1.21462 * 120.00519 * 359.97438 * 4 3 2 6 6 C 1.47726 * 119.99369 * 179.97438 * 4 3 2 7 7 C 1.39621 * 120.15310 * 359.72361 * 6 4 3 8 8 C 1.37952 * 119.84789 * 179.69494 * 7 6 4 9 9 C 1.38364 * 120.14847 * 0.58110 * 8 7 6 10 10 C 1.50697 * 119.84878 * 179.74221 * 9 8 7 11 11 C 1.53005 * 109.46836 * 269.97922 * 10 9 8 12 12 H 1.09005 * 109.46990 * 304.99331 * 11 10 9 13 13 C 1.53003 * 109.47133 * 185.00214 * 11 10 9 14 14 N 1.46491 * 109.47422 * 65.00067 * 11 10 9 15 15 C 1.36939 * 119.99855 * 205.00447 * 14 11 10 16 16 H 1.07995 * 120.00283 * 359.97438 * 15 14 11 17 17 C 1.38821 * 119.99839 * 179.97438 * 15 14 11 18 18 N 1.31619 * 119.99906 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46695 * 60.00627 * 19 17 15 21 21 H 1.48496 * 109.46763 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47507 * 300.00127 * 19 17 15 23 23 C 1.38366 * 120.30576 * 359.71385 * 9 8 7 24 24 C 1.37947 * 120.14940 * 359.97438 * 23 9 8 25 25 H 1.08994 * 109.47596 * 60.00066 * 1 2 3 26 26 H 1.08999 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46715 * 299.99572 * 1 2 3 28 28 H 1.08995 * 109.47139 * 240.00598 * 2 1 3 29 29 H 1.08994 * 109.47596 * 119.99934 * 2 1 3 30 30 H 1.08004 * 120.07573 * 359.97239 * 7 6 4 31 31 H 1.07998 * 119.92402 * 180.29633 * 8 7 6 32 32 H 1.09004 * 109.47299 * 29.97414 * 10 9 8 33 33 H 1.08996 * 109.47457 * 149.97508 * 10 9 8 34 34 H 1.09009 * 109.46946 * 299.99418 * 13 11 10 35 35 H 1.09004 * 109.47557 * 59.99194 * 13 11 10 36 36 H 1.08995 * 109.47134 * 179.97438 * 13 11 10 37 37 H 0.97000 * 120.00046 * 24.99501 * 14 11 10 38 38 H 0.97003 * 119.99646 * 180.02562 * 18 17 15 39 39 H 1.07993 * 119.92708 * 179.97438 * 23 9 8 40 40 H 1.07995 * 120.07944 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0894 0.5824 -0.0005 6 6 3.9139 2.9107 -0.0011 7 6 3.0663 4.0201 -0.0070 8 6 3.6002 5.2921 -0.0011 9 6 4.9724 5.4699 -0.0017 10 6 5.5483 6.8624 -0.0011 11 6 5.7431 7.3343 -1.4435 12 1 6.3549 6.6111 -1.9829 13 6 6.4421 8.6953 -1.4450 14 7 4.4382 7.4548 -2.0983 15 6 4.3440 7.3547 -3.4608 16 1 5.2317 7.1873 -4.0526 17 6 3.1074 7.4684 -4.0813 18 7 2.0256 7.6730 -3.3600 19 14 2.9790 7.3326 -5.9399 20 1 3.4775 6.0030 -6.3746 21 1 1.5603 7.4872 -6.3506 22 1 3.7968 8.3988 -6.5719 23 6 5.8182 4.3749 -0.0021 24 6 5.2978 3.0973 -0.0014 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.9950 3.8828 -0.0115 31 1 2.9456 6.1512 -0.0008 32 1 4.8648 7.5382 0.5130 33 1 6.5096 6.8579 0.5126 34 1 5.8303 9.4185 -0.9056 35 1 7.4130 8.6057 -0.9577 36 1 6.5812 9.0312 -2.4725 37 1 3.6409 7.6054 -1.5668 38 1 1.1614 7.7521 -3.7936 39 1 6.8883 4.5206 -0.0029 40 1 5.9590 2.2435 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257147424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:55 Heat of formation + Delta-G solvation = -65.004956 kcal Electronic energy + Delta-G solvation = -21111.526054 eV Core-core repulsion = 17891.088886 eV Total energy + Delta-G solvation = -3220.437168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42299 -38.85641 -36.55754 -35.85660 -32.80123 -31.90522 -30.95684 -30.66260 -28.65493 -26.69177 -24.04446 -23.48503 -22.41409 -22.20883 -20.53602 -19.77362 -17.88979 -17.20046 -16.86855 -16.50725 -15.24795 -15.06906 -14.53185 -14.28631 -14.19338 -13.67237 -13.57268 -13.34154 -13.14895 -12.88283 -12.57293 -12.29802 -12.12103 -11.82879 -11.72584 -11.57787 -11.52308 -10.90839 -10.78399 -10.72525 -10.61165 -10.57154 -10.35148 -10.29353 -10.01304 -9.64066 -8.90985 -8.64720 -8.40787 -6.94026 -5.75109 -3.02457 0.97643 1.72736 2.69912 2.75734 3.45156 3.49954 3.50378 4.09188 4.61084 4.73942 4.81479 4.88848 5.06906 5.13963 5.18296 5.24975 5.43756 5.54271 5.58056 5.64819 5.68296 5.73508 5.82331 5.84944 5.98900 6.05778 6.18269 6.29261 6.33585 6.38056 6.44218 6.58052 6.61915 6.69005 6.80941 6.98243 7.07613 7.21419 7.72050 7.85812 8.43820 9.55416 10.11736 10.46932 11.47662 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.005100 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.037439 B = 5489.296319 C = 6858.948209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.353 6.353 4 C 0.516 3.484 5 O -0.519 6.519 6 C -0.147 4.147 7 C -0.054 4.054 8 C -0.104 4.104 9 C -0.018 4.018 10 C -0.096 4.096 11 C 0.176 3.824 12 H 0.048 0.952 13 C -0.164 4.164 14 N -0.721 5.721 15 C -0.235 4.235 16 H 0.068 0.932 17 C -0.011 4.011 18 N -0.933 5.933 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.137 4.137 24 C -0.057 4.057 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.127 0.873 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -9.537 10.407 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.362 3.638 5 O -0.409 6.409 6 C -0.148 4.148 7 C -0.073 4.073 8 C -0.122 4.122 9 C -0.018 4.018 10 C -0.134 4.134 11 C 0.066 3.934 12 H 0.066 0.934 13 C -0.224 4.224 14 N -0.363 5.363 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.207 4.207 18 N -0.581 5.581 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.154 4.154 24 C -0.075 4.075 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.145 0.855 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.080 -9.879 10.217 14.363 hybrid contribution -0.422 -0.177 -1.094 1.185 sum 1.658 -10.057 9.123 13.679 Atomic orbital electron populations 1.21809 0.92607 1.02806 1.03790 1.23000 0.95373 0.80291 1.02443 1.86582 1.24078 1.32055 1.84244 1.21315 0.80325 0.90092 0.72060 1.90781 1.60439 1.42699 1.46972 1.18961 0.94126 0.89473 1.12208 1.21398 0.99914 0.91655 0.94303 1.21093 0.94847 0.97131 0.99140 1.20165 0.93589 0.95558 0.92515 1.21103 1.00632 0.92281 0.99346 1.20211 0.89288 0.94185 0.89697 0.93365 1.22443 0.98517 0.99970 1.01501 1.42400 1.02851 1.86633 1.04371 1.19159 0.93025 1.41185 0.83254 0.91426 1.24666 0.95560 1.02938 0.97517 1.69627 0.97871 1.56597 1.34053 0.86337 0.76535 0.77818 0.85938 1.21393 1.21738 1.21363 1.20915 0.99824 0.91505 1.03202 1.21073 0.93046 0.97675 0.95747 0.91229 0.90359 0.91429 0.91274 0.91372 0.84928 0.84839 0.90773 0.90925 0.93432 0.94489 0.92690 0.78316 0.93564 0.85515 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.71 6.20 37.16 0.23 0.94 16 3 O -0.35 -5.18 9.47 -40.53 -0.38 -5.57 16 4 C 0.52 8.45 7.90 34.61 0.27 8.73 16 5 O -0.52 -9.23 16.14 -19.24 -0.31 -9.54 16 6 C -0.15 -2.41 5.87 -104.98 -0.62 -3.03 16 7 C -0.05 -0.90 9.62 -39.17 -0.38 -1.28 16 8 C -0.10 -1.78 9.07 -39.64 -0.36 -2.14 16 9 C -0.02 -0.29 4.96 -104.53 -0.52 -0.81 16 10 C -0.10 -1.46 4.88 -27.88 -0.14 -1.60 16 11 C 0.18 3.32 2.88 -67.93 -0.20 3.12 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 14 N -0.72 -17.15 4.57 -53.42 -0.24 -17.39 16 15 C -0.23 -6.38 9.93 -15.05 -0.15 -6.52 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 19 Si 0.90 22.40 29.55 -169.99 -5.02 17.37 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.14 -2.03 9.68 -39.64 -0.38 -2.42 16 24 C -0.06 -0.88 9.60 -39.17 -0.38 -1.26 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.13 2.03 7.61 -52.48 -0.40 1.63 16 31 H 0.13 2.34 7.56 -52.49 -0.40 1.95 16 32 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.38 9.54 7.01 -40.82 -0.29 9.26 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.13 1.84 7.65 -52.49 -0.40 1.44 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -31.07 343.37 -8.13 -39.20 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.09 Total: 7.48 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.97 Total: -10.06 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.48 Total: -44.06 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.69 Total: -15.11 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.07 -8.13 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257147424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.805 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds