Wall clock time and date at job start Mon Mar 30 2020 01:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45208 * 109.46664 * 2 1 4 4 C 1.34713 * 116.99431 * 180.02562 * 3 2 1 5 5 O 1.21462 * 120.00519 * 359.97438 * 4 3 2 6 6 C 1.47726 * 119.99369 * 179.97438 * 4 3 2 7 7 C 1.39621 * 120.15310 * 359.72361 * 6 4 3 8 8 C 1.37952 * 119.84789 * 179.69494 * 7 6 4 9 9 C 1.38364 * 120.14847 * 0.58110 * 8 7 6 10 10 C 1.50697 * 119.84878 * 179.74221 * 9 8 7 11 11 C 1.53005 * 109.46836 * 269.97922 * 10 9 8 12 12 H 1.09005 * 109.46990 * 304.99331 * 11 10 9 13 13 C 1.53003 * 109.47133 * 185.00214 * 11 10 9 14 14 N 1.46491 * 109.47422 * 65.00067 * 11 10 9 15 15 C 1.36939 * 119.99855 * 205.00447 * 14 11 10 16 16 H 1.07995 * 120.00283 * 359.97438 * 15 14 11 17 17 C 1.38821 * 119.99839 * 179.97438 * 15 14 11 18 18 N 1.31619 * 119.99906 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46695 * 60.00627 * 19 17 15 21 21 H 1.48496 * 109.46763 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47507 * 300.00127 * 19 17 15 23 23 C 1.38366 * 120.30576 * 359.71385 * 9 8 7 24 24 C 1.37947 * 120.14940 * 359.97438 * 23 9 8 25 25 H 1.08994 * 109.47596 * 60.00066 * 1 2 3 26 26 H 1.08999 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46715 * 299.99572 * 1 2 3 28 28 H 1.08995 * 109.47139 * 240.00598 * 2 1 3 29 29 H 1.08994 * 109.47596 * 119.99934 * 2 1 3 30 30 H 1.08004 * 120.07573 * 359.97239 * 7 6 4 31 31 H 1.07998 * 119.92402 * 180.29633 * 8 7 6 32 32 H 1.09004 * 109.47299 * 29.97414 * 10 9 8 33 33 H 1.08996 * 109.47457 * 149.97508 * 10 9 8 34 34 H 1.09009 * 109.46946 * 299.99418 * 13 11 10 35 35 H 1.09004 * 109.47557 * 59.99194 * 13 11 10 36 36 H 1.08995 * 109.47134 * 179.97438 * 13 11 10 37 37 H 0.97000 * 120.00046 * 24.99501 * 14 11 10 38 38 H 0.97003 * 119.99646 * 180.02562 * 18 17 15 39 39 H 1.07993 * 119.92708 * 179.97438 * 23 9 8 40 40 H 1.07995 * 120.07944 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0894 0.5824 -0.0005 6 6 3.9139 2.9107 -0.0011 7 6 3.0663 4.0201 -0.0070 8 6 3.6002 5.2921 -0.0011 9 6 4.9724 5.4699 -0.0017 10 6 5.5483 6.8624 -0.0011 11 6 5.7431 7.3343 -1.4435 12 1 6.3549 6.6111 -1.9829 13 6 6.4421 8.6953 -1.4450 14 7 4.4382 7.4548 -2.0983 15 6 4.3440 7.3547 -3.4608 16 1 5.2317 7.1873 -4.0526 17 6 3.1074 7.4684 -4.0813 18 7 2.0256 7.6730 -3.3600 19 14 2.9790 7.3326 -5.9399 20 1 3.4775 6.0030 -6.3746 21 1 1.5603 7.4872 -6.3506 22 1 3.7968 8.3988 -6.5719 23 6 5.8182 4.3749 -0.0021 24 6 5.2978 3.0973 -0.0014 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.9950 3.8828 -0.0115 31 1 2.9456 6.1512 -0.0008 32 1 4.8648 7.5382 0.5130 33 1 6.5096 6.8579 0.5126 34 1 5.8303 9.4185 -0.9056 35 1 7.4130 8.6057 -0.9577 36 1 6.5812 9.0312 -2.4725 37 1 3.6409 7.6054 -1.5668 38 1 1.1614 7.7521 -3.7936 39 1 6.8883 4.5206 -0.0029 40 1 5.9590 2.2435 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257147424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:55 Heat of formation + Delta-G solvation = -81.276429 kcal Electronic energy + Delta-G solvation = -21112.231638 eV Core-core repulsion = 17891.088886 eV Total energy + Delta-G solvation = -3221.142752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64624 -40.10418 -37.81278 -37.37606 -34.55598 -33.04727 -32.26011 -31.89117 -30.41329 -27.96212 -25.79174 -24.77127 -23.66772 -23.30853 -21.82778 -21.22999 -19.21115 -19.07707 -18.07959 -17.61689 -16.80886 -16.46954 -16.03495 -15.53864 -15.36528 -15.29290 -15.18022 -14.54714 -14.36174 -14.04334 -13.82189 -13.61405 -13.35548 -13.21191 -12.93525 -12.81044 -12.75080 -12.58144 -12.51620 -12.23496 -12.11084 -11.87061 -11.70240 -11.62662 -11.57279 -11.49539 -10.89397 -9.89933 -9.69632 -8.90881 -7.88042 -5.12800 -0.29259 0.48405 1.47180 1.47891 1.48705 1.54125 1.61283 2.59548 2.83026 3.46009 3.61177 3.87243 3.91664 3.97795 4.02384 4.05766 4.06952 4.30509 4.33852 4.44316 4.50649 4.66154 4.73663 4.77627 4.86615 4.89341 4.96657 5.07579 5.09014 5.11486 5.18663 5.30764 5.34299 5.38622 5.44374 5.56949 5.64560 5.74013 5.97044 6.35222 6.62874 7.42289 8.20402 8.43105 9.35006 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.005100 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.037439 B = 5489.296319 C = 6858.948209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.516 3.484 5 O -0.537 6.537 6 C -0.159 4.159 7 C -0.063 4.063 8 C -0.121 4.121 9 C -0.028 4.028 10 C -0.086 4.086 11 C 0.170 3.830 12 H 0.042 0.958 13 C -0.156 4.156 14 N -0.730 5.730 15 C -0.230 4.230 16 H 0.069 0.931 17 C -0.070 4.070 18 N -0.964 5.964 19 Si 0.957 3.043 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.280 1.280 23 C -0.130 4.130 24 C -0.060 4.060 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.374 0.626 38 H 0.248 0.752 39 H 0.159 0.841 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -10.037 10.921 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.363 3.637 5 O -0.429 6.429 6 C -0.160 4.160 7 C -0.081 4.081 8 C -0.139 4.139 9 C -0.028 4.028 10 C -0.123 4.123 11 C 0.061 3.939 12 H 0.060 0.940 13 C -0.216 4.216 14 N -0.371 5.371 15 C -0.362 4.362 16 H 0.087 0.913 17 C -0.262 4.262 18 N -0.615 5.615 19 Si 0.788 3.212 20 H -0.212 1.212 21 H -0.224 1.224 22 H -0.206 1.206 23 C -0.148 4.148 24 C -0.078 4.078 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.207 0.793 38 H 0.057 0.943 39 H 0.177 0.823 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.591 -10.377 10.744 15.363 hybrid contribution -0.831 -0.071 -1.200 1.462 sum 2.760 -10.448 9.544 14.418 Atomic orbital electron populations 1.21840 0.90389 1.04558 1.03603 1.23358 0.97124 0.78758 1.02810 1.86584 1.23159 1.34196 1.83735 1.21346 0.80807 0.89876 0.71639 1.90759 1.60936 1.43152 1.48096 1.19147 0.94835 0.89490 1.12543 1.21446 1.00252 0.91720 0.94695 1.21121 0.95626 0.96871 1.00277 1.20347 0.93255 0.96578 0.92607 1.21038 1.02671 0.91515 0.97099 1.20456 0.86962 0.95068 0.91369 0.94001 1.22304 1.00275 0.98408 1.00572 1.42579 1.04624 1.86535 1.03397 1.19483 0.92802 1.38943 0.84998 0.91345 1.25318 0.95626 1.04277 1.01010 1.69764 0.97927 1.58670 1.35140 0.85451 0.76023 0.77778 0.81981 1.21240 1.22369 1.20623 1.21244 1.01270 0.90626 1.01642 1.21327 0.92787 0.98567 0.95112 0.91878 0.87600 0.91117 0.91387 0.90567 0.84743 0.86196 0.90646 0.87046 0.93646 0.90596 0.94899 0.79314 0.94326 0.82320 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.29 71.98 0.74 -1.59 16 2 C 0.05 1.16 6.20 71.98 0.45 1.60 16 3 O -0.36 -10.57 9.47 -56.23 -0.53 -11.10 16 4 C 0.52 16.84 7.90 70.33 0.56 17.40 16 5 O -0.54 -18.90 16.14 19.96 0.32 -18.58 16 6 C -0.16 -5.18 5.87 -20.10 -0.12 -5.30 16 7 C -0.06 -2.10 9.62 22.54 0.22 -1.89 16 8 C -0.12 -4.16 9.07 22.23 0.20 -3.96 16 9 C -0.03 -0.85 4.96 -19.80 -0.10 -0.95 16 10 C -0.09 -2.40 4.88 29.85 0.15 -2.25 16 11 C 0.17 6.07 2.88 45.00 0.13 6.20 16 12 H 0.04 1.56 8.08 -2.38 -0.02 1.54 16 13 C -0.16 -4.97 9.49 71.98 0.68 -4.29 16 14 N -0.73 -34.56 4.57 -322.93 -1.48 -36.04 16 15 C -0.23 -12.45 9.93 84.04 0.83 -11.62 16 16 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 18 N -0.96 -57.64 13.06 21.65 0.28 -57.36 16 19 Si 0.96 46.34 29.55 68.60 2.03 48.37 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 C -0.13 -3.55 9.68 22.23 0.22 -3.33 16 24 C -0.06 -1.75 9.60 22.54 0.22 -1.54 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.13 4.28 7.61 -2.91 -0.02 4.26 16 31 H 0.12 4.38 7.56 -2.91 -0.02 4.36 16 32 H 0.07 2.12 8.08 -2.38 -0.02 2.10 16 33 H 0.11 2.29 8.08 -2.39 -0.02 2.27 16 34 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.37 18.88 7.01 -92.71 -0.65 18.23 16 38 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.14 3.77 7.65 -2.91 -0.02 3.75 16 Total: -1.00 -66.67 343.37 5.63 -61.04 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.37 Total: 28.67 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.64 Total: -14.99 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -1.19 Total: -93.40 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.21 Total: -29.68 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -66.67 5.63 -61.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257147424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.240 kcal (2) G-P(sol) polarization free energy of solvation -66.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds