Wall clock time and date at job start Mon Mar 30 2020 02:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 C 1.50701 * 119.92999 * 180.25600 * 9 8 7 11 11 N 1.46897 * 109.46934 * 270.29579 * 10 9 8 12 12 C 1.46907 * 110.99814 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46906 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46983 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47056 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00312 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99488 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99650 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00337 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47440 * 90.00026 * 19 17 15 21 21 H 1.48499 * 109.47312 * 209.99465 * 19 17 15 22 22 H 1.48497 * 109.47347 * 329.99579 * 19 17 15 23 23 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 24 24 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 26 26 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 27 27 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 28 28 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 30 30 H 1.09001 * 109.46856 * 30.29199 * 10 9 8 31 31 H 1.09001 * 109.47100 * 150.29448 * 10 9 8 32 32 H 1.00899 * 111.00380 * 56.04715 * 11 10 9 33 33 H 1.08995 * 109.46875 * 300.00137 * 12 11 10 34 34 H 1.09004 * 109.46781 * 59.99957 * 12 11 10 35 35 H 1.09002 * 109.47069 * 299.99974 * 13 12 11 36 36 H 1.08991 * 109.47354 * 60.00419 * 13 12 11 37 37 H 1.09002 * 109.46960 * 299.99751 * 14 13 12 38 38 H 1.09004 * 109.46979 * 59.99652 * 14 13 12 39 39 H 0.97003 * 120.00316 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.07576 * 179.75004 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 6 6.2435 3.9249 0.0013 11 7 6.4675 4.3596 1.3864 12 6 7.1398 5.6652 1.4262 13 6 7.3560 6.0834 2.8819 14 6 8.0556 7.4434 2.9234 15 6 8.2680 7.8556 4.3573 16 1 7.9366 7.2122 5.1588 17 6 8.8853 9.0543 4.6457 18 7 9.0701 9.4142 5.8970 19 14 9.4577 10.1675 3.2593 20 1 8.3647 11.1035 2.8925 21 1 10.6440 10.9421 3.7041 22 1 9.8196 9.3422 2.0790 23 6 4.1759 2.5199 0.0006 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8159 -0.8558 0.0006 28 1 6.2712 -0.7157 0.0010 29 1 7.3829 1.4790 0.0110 30 1 7.2011 3.8410 -0.5125 31 1 5.6183 4.6553 -0.5123 32 1 6.9905 3.6681 1.9025 33 1 8.1036 5.5930 0.9223 34 1 6.5212 6.4079 0.9224 35 1 6.3923 6.1555 3.3862 36 1 7.9747 5.3407 3.3853 37 1 9.0193 7.3717 2.4190 38 1 7.4365 8.1860 2.4200 39 1 9.5048 10.2574 6.1001 40 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325035195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:55 Heat of formation + Delta-G solvation = -73.189960 kcal Electronic energy + Delta-G solvation = -19936.158449 eV Core-core repulsion = 16715.366353 eV Total energy + Delta-G solvation = -3220.792096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84102 -39.31864 -36.73862 -36.47177 -33.84438 -32.28301 -31.59632 -30.69735 -28.15553 -27.10408 -24.77833 -24.30765 -22.10579 -21.96166 -20.86970 -20.04732 -17.93999 -17.41210 -16.70493 -16.64602 -16.35977 -15.90571 -15.15917 -14.83629 -14.61772 -14.12809 -13.92738 -13.88239 -13.72428 -13.24826 -12.74176 -12.60438 -12.50990 -12.39742 -12.01960 -11.74741 -11.60385 -11.24359 -11.13480 -10.95150 -10.80505 -10.77168 -9.95470 -9.72912 -9.62776 -9.33657 -9.17023 -9.10677 -8.51533 -8.29166 -6.01747 -3.99477 0.40920 1.04389 2.25783 2.35414 3.32258 3.39253 3.42619 3.45192 4.32271 4.38552 4.47160 4.51264 4.64615 4.76133 4.81110 4.84943 4.99388 5.02316 5.14039 5.30452 5.32037 5.41807 5.58079 5.67921 5.68985 5.76472 5.93611 5.97870 6.08652 6.16165 6.27633 6.51497 6.55555 6.57050 6.92748 7.14951 7.35428 7.43707 7.44120 7.52488 7.82538 8.57475 9.03929 9.60758 11.11841 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028231 B = 0.002562 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.568914 B =10928.038610 C =11381.590082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.503 6.503 5 C -0.131 4.131 6 C -0.065 4.065 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.089 4.089 10 C 0.095 3.905 11 N -0.686 5.686 12 C 0.056 3.944 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.519 4.519 16 H 0.072 0.928 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.031 4.031 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.340 0.660 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.013 0.987 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 -22.481 -16.471 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.354 3.646 4 O -0.391 6.391 5 C -0.132 4.132 6 C -0.083 4.083 7 C -0.151 4.151 8 C -0.095 4.095 9 C -0.089 4.089 10 C -0.034 4.034 11 N -0.317 5.317 12 C -0.072 4.072 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.090 0.910 17 C -0.137 4.137 18 N -0.544 5.544 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.049 4.049 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.980 -21.757 -16.293 29.705 hybrid contribution 1.012 0.474 -0.813 1.382 sum -10.968 -21.283 -17.106 29.426 Atomic orbital electron populations 1.23294 0.75859 1.03774 1.02796 1.86529 1.23659 1.32718 1.84453 1.21251 0.89201 0.81442 0.72730 1.90858 1.66763 1.35983 1.45503 1.19069 0.88827 0.95101 1.10187 1.21435 0.93974 0.97767 0.95154 1.21123 0.94299 0.97994 1.01731 1.21406 1.00363 0.92019 0.95715 1.19824 0.93131 0.95391 1.00560 1.20906 0.98531 0.92485 0.91433 1.60581 1.54284 1.05400 1.11391 1.22189 0.95726 0.89621 0.99674 1.21446 1.01023 0.98660 0.92640 1.19546 0.95138 0.92495 0.97908 1.21153 1.38367 1.04881 0.91268 0.91020 1.25052 0.95494 0.97740 0.95379 1.69921 1.43815 1.22918 1.17721 0.86755 0.78470 0.80895 0.83002 1.20293 1.21449 1.19109 1.21182 0.94050 0.96742 0.92970 0.87935 0.91662 0.91791 0.84596 0.85057 0.85382 0.94154 0.89923 0.84188 0.95622 0.91302 0.91886 0.92995 0.96846 0.97024 0.92786 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.41 9.82 -40.51 -0.40 -3.81 16 3 C 0.51 5.98 7.90 34.60 0.27 6.25 16 4 O -0.50 -7.25 16.14 -19.24 -0.31 -7.56 16 5 C -0.13 -1.42 5.87 -104.99 -0.62 -2.03 16 6 C -0.06 -0.56 9.62 -39.17 -0.38 -0.93 16 7 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 8 C -0.08 -0.66 9.69 -39.49 -0.38 -1.04 16 9 C -0.09 -0.93 5.39 -104.68 -0.56 -1.49 16 10 C 0.10 1.06 5.81 -4.98 -0.03 1.03 16 11 N -0.69 -9.41 6.49 -115.05 -0.75 -10.16 16 12 C 0.06 0.90 5.69 -3.82 -0.02 0.88 16 13 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 14 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 15 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 16 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 19 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 C -0.03 -0.35 9.24 -39.17 -0.36 -0.71 16 24 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.14 0.92 7.61 -52.49 -0.40 0.52 16 28 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.34 4.39 8.72 -39.29 -0.34 4.05 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.14 1.70 7.65 -52.49 -0.40 1.30 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -33.42 343.33 -8.41 -41.83 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.14 Total: -0.94 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.10 Total: -14.31 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.03 Total: -37.71 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.71 Total: -11.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.42 -8.41 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325035195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.360 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds