Wall clock time and date at job start Mon Mar 30 2020 02:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 C 1.50701 * 119.92999 * 180.25600 * 9 8 7 11 11 N 1.46897 * 109.46934 * 270.29579 * 10 9 8 12 12 C 1.46907 * 110.99814 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46906 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46983 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47056 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00312 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99488 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99650 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00337 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47440 * 90.00026 * 19 17 15 21 21 H 1.48499 * 109.47312 * 209.99465 * 19 17 15 22 22 H 1.48497 * 109.47347 * 329.99579 * 19 17 15 23 23 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 24 24 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 26 26 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 27 27 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 28 28 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 30 30 H 1.09001 * 109.46856 * 30.29199 * 10 9 8 31 31 H 1.09001 * 109.47100 * 150.29448 * 10 9 8 32 32 H 1.00899 * 111.00380 * 56.04715 * 11 10 9 33 33 H 1.08995 * 109.46875 * 300.00137 * 12 11 10 34 34 H 1.09004 * 109.46781 * 59.99957 * 12 11 10 35 35 H 1.09002 * 109.47069 * 299.99974 * 13 12 11 36 36 H 1.08991 * 109.47354 * 60.00419 * 13 12 11 37 37 H 1.09002 * 109.46960 * 299.99751 * 14 13 12 38 38 H 1.09004 * 109.46979 * 59.99652 * 14 13 12 39 39 H 0.97003 * 120.00316 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.07576 * 179.75004 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 6 6.2435 3.9249 0.0013 11 7 6.4675 4.3596 1.3864 12 6 7.1398 5.6652 1.4262 13 6 7.3560 6.0834 2.8819 14 6 8.0556 7.4434 2.9234 15 6 8.2680 7.8556 4.3573 16 1 7.9366 7.2122 5.1588 17 6 8.8853 9.0543 4.6457 18 7 9.0701 9.4142 5.8970 19 14 9.4577 10.1675 3.2593 20 1 8.3647 11.1035 2.8925 21 1 10.6440 10.9421 3.7041 22 1 9.8196 9.3422 2.0790 23 6 4.1759 2.5199 0.0006 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8159 -0.8558 0.0006 28 1 6.2712 -0.7157 0.0010 29 1 7.3829 1.4790 0.0110 30 1 7.2011 3.8410 -0.5125 31 1 5.6183 4.6553 -0.5123 32 1 6.9905 3.6681 1.9025 33 1 8.1036 5.5930 0.9223 34 1 6.5212 6.4079 0.9224 35 1 6.3923 6.1555 3.3862 36 1 7.9747 5.3407 3.3853 37 1 9.0193 7.3717 2.4190 38 1 7.4365 8.1860 2.4200 39 1 9.5048 10.2574 6.1001 40 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325035195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:55 Heat of formation + Delta-G solvation = -94.498098 kcal Electronic energy + Delta-G solvation = -19937.082440 eV Core-core repulsion = 16715.366353 eV Total energy + Delta-G solvation = -3221.716087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.66086 -40.07608 -37.74065 -37.51362 -35.55173 -33.89845 -32.41656 -31.98017 -28.96344 -28.47120 -25.98466 -25.10218 -23.63183 -22.75797 -21.93937 -21.49938 -18.96423 -18.68408 -18.20876 -17.44017 -17.11226 -16.90721 -16.43005 -15.98405 -15.74008 -15.60151 -14.97824 -14.74829 -14.60208 -14.48857 -14.34903 -13.68808 -13.52169 -13.26868 -13.23343 -13.04519 -12.70352 -12.54471 -12.51557 -12.05000 -11.86938 -11.78244 -11.68290 -11.51960 -11.44594 -11.26796 -10.76103 -10.06353 -9.89442 -9.33158 -8.29011 -6.33442 -0.35210 0.32530 1.36703 1.38451 1.43955 1.50680 1.63217 2.36944 2.69824 3.06171 3.37815 3.64285 3.74514 3.91189 4.11717 4.19489 4.25803 4.27336 4.30502 4.34032 4.37892 4.56637 4.65115 4.69688 4.70367 4.86752 4.91317 4.98215 4.99610 5.12491 5.18126 5.27353 5.39704 5.51498 5.53203 5.61981 5.66982 5.85390 6.06252 6.30033 6.46747 6.60398 6.75080 7.31032 8.88074 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028231 B = 0.002562 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.568914 B =10928.038610 C =11381.590082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.508 3.492 4 O -0.542 6.542 5 C -0.150 4.150 6 C -0.058 4.058 7 C -0.126 4.126 8 C -0.072 4.072 9 C -0.099 4.099 10 C 0.099 3.901 11 N -0.696 5.696 12 C 0.070 3.930 13 C -0.092 4.092 14 C -0.010 4.010 15 C -0.534 4.534 16 H 0.028 0.972 17 C -0.001 4.001 18 N -0.954 5.954 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.243 1.243 23 C -0.049 4.049 24 H 0.138 0.862 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.156 0.844 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.346 0.654 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.266 0.734 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.166 -24.172 -18.927 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.355 3.645 4 O -0.433 6.433 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.144 4.144 8 C -0.090 4.090 9 C -0.099 4.099 10 C -0.029 4.029 11 N -0.328 5.328 12 C -0.059 4.059 13 C -0.130 4.130 14 C -0.048 4.048 15 C -0.572 4.572 16 H 0.046 0.954 17 C -0.197 4.197 18 N -0.594 5.594 19 Si 0.779 3.221 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.166 1.166 23 C -0.068 4.068 24 H 0.156 0.844 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.174 0.826 28 H 0.183 0.817 29 H 0.169 0.831 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.969 -23.495 -18.762 32.005 hybrid contribution 0.631 0.863 0.044 1.070 sum -10.339 -22.631 -18.718 31.136 Atomic orbital electron populations 1.23604 0.74294 1.06043 1.02521 1.86519 1.25215 1.31437 1.83840 1.21541 0.89728 0.81483 0.71739 1.90831 1.67638 1.37262 1.47604 1.19162 0.88541 0.95814 1.11602 1.21713 0.94506 0.97658 0.93757 1.21517 0.94032 0.98916 0.99914 1.21711 1.01464 0.91598 0.94255 1.19781 0.92635 0.95823 1.01660 1.20896 0.99390 0.92837 0.89824 1.60472 1.54134 1.04758 1.13410 1.21901 0.96715 0.90862 0.96382 1.21270 0.99425 0.96657 0.95631 1.19498 0.96122 0.94720 0.94500 1.21534 1.38109 1.04571 0.93020 0.95374 1.26109 0.95602 0.99641 0.98388 1.70084 1.45103 1.23822 1.20440 0.85573 0.78140 0.78643 0.79755 1.19298 1.20942 1.16601 1.21128 0.94698 0.96497 0.94510 0.84353 0.92219 0.91897 0.82590 0.81696 0.83107 0.92248 0.90434 0.83600 0.94219 0.91263 0.93742 0.93277 0.95830 0.96366 0.92514 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.48 9.82 -56.18 -0.55 -7.03 16 3 C 0.51 12.11 7.90 70.33 0.56 12.67 16 4 O -0.54 -16.42 16.14 19.93 0.32 -16.10 16 5 C -0.15 -3.19 5.87 -20.10 -0.12 -3.31 16 6 C -0.06 -0.86 9.62 22.54 0.22 -0.64 16 7 C -0.13 -1.49 10.03 22.23 0.22 -1.27 16 8 C -0.07 -1.02 9.69 22.33 0.22 -0.81 16 9 C -0.10 -1.92 5.39 -19.90 -0.11 -2.03 16 10 C 0.10 2.04 5.81 85.56 0.50 2.53 16 11 N -0.70 -18.16 6.49 -517.92 -3.36 -21.52 16 12 C 0.07 2.12 5.69 86.30 0.49 2.61 16 13 C -0.09 -3.63 5.41 30.59 0.17 -3.46 16 14 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 15 C -0.53 -31.71 9.66 25.60 0.25 -31.47 16 16 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 17 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 18 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 19 Si 0.96 44.81 27.47 68.60 1.88 46.69 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 23 C -0.05 -1.14 9.24 22.54 0.21 -0.93 16 24 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.16 1.63 7.61 -2.91 -0.02 1.61 16 28 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 29 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 32 H 0.35 8.34 8.72 -89.69 -0.78 7.55 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 38 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 39 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.12 3.14 7.65 -2.91 -0.02 3.12 16 Total: -1.00 -74.81 343.33 3.16 -71.66 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.19 Total: 11.72 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.38 Total: -24.53 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.06 Total: -82.39 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.23 Total: -23.14 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -74.81 3.16 -71.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325035195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.842 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds