Wall clock time and date at job start Mon Mar 30 2020 01:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05922 * 359.72826 * 4 3 2 6 6 C 1.38121 * 119.94303 * 179.69478 * 5 4 3 7 7 C 1.38284 * 120.05670 * 0.60266 * 6 5 4 8 8 C 1.38245 * 120.11162 * 359.67148 * 7 6 5 9 9 C 1.50704 * 119.97222 * 179.97438 * 8 7 6 10 10 C 1.52989 * 109.47377 * 270.02397 * 9 8 7 11 11 C 1.50700 * 109.47162 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00162 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00103 * 180.02562 * 13 11 10 15 15 C 1.50689 * 109.47323 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99941 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00227 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00031 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99762 * 359.97438 * 17 15 14 20 20 H 1.48492 * 109.46984 * 90.00338 * 19 17 15 21 21 H 1.48500 * 109.46840 * 210.00417 * 19 17 15 22 22 H 1.48498 * 109.46954 * 329.99984 * 19 17 15 23 23 C 1.38173 * 120.05607 * 0.02881 * 8 7 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.08003 * 120.02200 * 359.97438 * 5 4 3 30 30 H 1.07998 * 119.96674 * 180.29445 * 6 5 4 31 31 H 1.08003 * 119.94493 * 179.69558 * 7 6 5 32 32 H 1.09002 * 109.46581 * 30.02752 * 9 8 7 33 33 H 1.08999 * 109.46711 * 150.02339 * 9 8 7 34 34 H 1.08995 * 109.47307 * 300.00059 * 10 9 8 35 35 H 1.08999 * 109.47248 * 60.00271 * 10 9 8 36 36 H 0.96999 * 120.00015 * 0.02562 * 13 11 10 37 37 H 1.09002 * 109.46538 * 299.99930 * 14 13 11 38 38 H 1.08999 * 109.46933 * 59.99626 * 14 13 11 39 39 H 0.97001 * 119.99509 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.02728 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.2000 0.4259 0.0046 6 6 5.5689 0.6096 -0.0023 7 6 6.0962 1.8880 -0.0018 8 6 5.2551 2.9851 -0.0012 9 6 5.8331 4.3769 -0.0001 10 6 6.0289 4.8467 1.4426 11 6 6.6075 6.2382 1.4437 12 8 6.8398 6.7991 0.3938 13 7 6.8667 6.8593 2.6114 14 6 7.4287 8.2123 2.6124 15 6 7.6217 8.6750 4.0335 16 1 7.3523 8.0263 4.8539 17 6 8.1412 9.9269 4.2864 18 7 8.3101 10.3305 5.5267 19 14 8.6065 11.0491 2.8674 20 1 7.4367 11.8831 2.4919 21 1 9.7296 11.9287 3.2798 22 1 9.0231 10.2275 1.7027 23 6 3.8849 2.8067 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7886 -0.5727 0.0095 30 1 6.2280 -0.2459 -0.0031 31 1 7.1669 2.0295 -0.0023 32 1 6.7942 4.3715 -0.5142 33 1 5.1504 5.0542 -0.5133 34 1 5.0678 4.8520 1.9567 35 1 6.7116 4.1694 1.9558 36 1 6.6812 6.4106 3.4511 37 1 8.3896 8.2069 2.0980 38 1 6.7458 8.8897 2.0997 39 1 8.6760 11.2111 5.7045 40 1 3.2283 3.6641 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329990418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:18 Heat of formation + Delta-G solvation = -71.925478 kcal Electronic energy + Delta-G solvation = -20077.602488 eV Core-core repulsion = 16856.865224 eV Total energy + Delta-G solvation = -3220.737264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39400 -39.05110 -37.90628 -34.39132 -33.68630 -32.33697 -32.31251 -30.19653 -29.49755 -27.83103 -24.99507 -23.55846 -22.69480 -21.85212 -20.71849 -19.74293 -18.06442 -17.20035 -16.40897 -16.30177 -16.18711 -15.93664 -15.21668 -15.13088 -14.38735 -14.11320 -13.71406 -13.67354 -13.34682 -13.16416 -12.93192 -12.89515 -12.48080 -12.30992 -12.02826 -11.88156 -11.77024 -11.60106 -11.06641 -10.98005 -10.95214 -10.82627 -10.73848 -9.96416 -9.48786 -9.26954 -8.89905 -8.76925 -8.35625 -8.12933 -6.20691 -4.22814 1.14666 1.29634 2.91528 3.25288 3.28921 3.34154 3.42760 3.56943 4.04652 4.34306 4.51321 4.53318 4.65077 4.75105 4.83094 4.93109 5.03898 5.14443 5.16441 5.18903 5.24110 5.35323 5.39396 5.44612 5.58575 5.65292 5.79716 5.83204 6.00019 6.11241 6.23473 6.27609 6.53216 6.62814 6.82633 7.08639 7.21519 7.24660 7.41081 8.14733 8.53784 8.76241 8.95869 9.39640 10.91270 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032043 B = 0.002642 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.628237 B =10596.493113 C =10901.339970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.129 3.871 5 C -0.217 4.217 6 C -0.079 4.079 7 C -0.154 4.154 8 C -0.036 4.036 9 C -0.066 4.066 10 C -0.135 4.135 11 C 0.499 3.501 12 O -0.561 6.561 13 N -0.707 5.707 14 C 0.219 3.781 15 C -0.543 4.543 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.149 4.149 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.397 0.603 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.267 0.733 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 -23.246 -10.709 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.084 3.916 5 C -0.236 4.236 6 C -0.097 4.097 7 C -0.172 4.172 8 C -0.037 4.037 9 C -0.103 4.103 10 C -0.175 4.175 11 C 0.284 3.716 12 O -0.441 6.441 13 N -0.355 5.355 14 C 0.097 3.903 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.167 4.167 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.230 0.770 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.190 -22.519 -11.316 27.574 hybrid contribution 0.250 0.151 -0.063 0.299 sum -10.939 -22.367 -11.379 27.376 Atomic orbital electron populations 1.21780 0.92751 1.02803 1.03655 1.22763 0.95873 0.82099 1.01291 1.86081 1.19189 1.29151 1.88702 1.18967 0.82131 0.94122 0.96354 1.21186 0.94483 0.97796 1.10088 1.20912 0.94240 0.97245 0.97335 1.21026 0.99999 0.91925 1.04224 1.19792 0.92230 0.95781 0.95849 1.20360 1.02422 0.91312 0.96245 1.21628 1.02777 0.94846 0.98224 1.20556 0.78867 0.87767 0.84378 1.90646 1.54137 1.67718 1.31573 1.46212 1.63153 1.18653 1.07475 1.19486 0.93693 0.78932 0.98177 1.21105 1.44410 1.02055 0.90560 0.90257 1.24811 0.94517 0.97564 0.95818 1.69886 1.44421 1.19998 1.18698 0.86803 0.78781 0.81017 0.83011 1.19851 1.20912 1.18511 1.20364 0.94783 0.94885 1.06717 0.90422 0.91420 0.91489 0.92079 0.92154 0.85835 0.85880 0.85696 0.89851 0.89948 0.89067 0.89075 0.76960 0.95740 0.96201 0.92277 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.41 10.14 -19.44 -0.20 -3.60 16 4 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 5 C -0.22 -2.09 9.04 -39.43 -0.36 -2.45 16 6 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 7 C -0.15 -1.61 9.70 -39.56 -0.38 -1.99 16 8 C -0.04 -0.42 5.13 -104.64 -0.54 -0.96 16 9 C -0.07 -0.84 4.63 -27.89 -0.13 -0.97 16 10 C -0.13 -1.80 5.68 -27.89 -0.16 -1.96 16 11 C 0.50 9.38 7.83 -10.98 -0.09 9.29 16 12 O -0.56 -12.62 15.98 5.56 0.09 -12.53 16 13 N -0.71 -14.37 5.55 -61.47 -0.34 -14.71 16 14 C 0.22 5.45 4.50 -5.20 -0.02 5.43 16 15 C -0.54 -15.03 9.83 -34.44 -0.34 -15.36 16 16 H 0.08 2.28 7.84 -52.48 -0.41 1.86 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 19 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 23 C -0.15 -1.75 9.64 -39.43 -0.38 -2.13 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 28 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 29 H 0.12 0.91 6.30 -52.48 -0.33 0.58 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 33 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.40 7.09 8.32 -40.82 -0.34 6.75 16 37 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 38 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -32.99 339.60 -7.82 -40.81 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.03 Total: 2.69 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.57 Total: -8.83 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.43 Total: -40.59 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.11 Total: -16.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.99 -7.82 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329990418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.116 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds