Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00053 * 2 1 4 4 H 1.09002 * 109.47168 * 357.89151 * 3 2 1 5 5 C 1.53001 * 109.47254 * 117.88702 * 3 2 1 6 6 N 1.46498 * 109.47080 * 300.00326 * 5 3 2 7 7 C 1.39785 * 120.00325 * 179.97438 * 6 5 3 8 8 C 1.38956 * 119.99919 * 359.72971 * 7 6 5 9 9 C 1.38018 * 119.99055 * 179.71659 * 8 7 6 10 10 C 1.38905 * 120.00279 * 0.55273 * 9 8 7 11 11 O 1.35792 * 119.98987 * 179.69806 * 10 9 8 12 12 C 1.34815 * 116.99807 * 184.24928 * 11 10 9 13 13 H 1.07997 * 119.99701 * 5.53786 * 12 11 10 14 14 C 1.38620 * 119.99656 * 185.53844 * 12 11 10 15 15 N 1.31587 * 119.99488 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00566 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47128 * 89.99689 * 16 14 12 18 18 H 1.48494 * 109.47284 * 210.00189 * 16 14 12 19 19 H 1.48504 * 109.46723 * 330.00291 * 16 14 12 20 20 C 1.38895 * 120.01003 * 359.72546 * 10 9 8 21 21 C 1.38008 * 120.01380 * 359.97438 * 20 10 9 22 22 C 1.52997 * 109.47310 * 237.89044 * 3 2 1 23 23 C 1.53003 * 117.49903 * 126.63953 * 22 3 2 24 24 C 1.53006 * 117.50098 * 57.97712 * 22 3 2 25 25 H 1.09003 * 109.47361 * 67.35774 * 1 2 3 26 26 H 1.08998 * 109.46869 * 307.35475 * 1 2 3 27 27 H 1.09003 * 109.47160 * 187.35996 * 1 2 3 28 28 H 1.09002 * 109.46666 * 60.00142 * 5 3 2 29 29 H 1.08995 * 109.47149 * 180.02562 * 5 3 2 30 30 H 0.96999 * 119.99913 * 0.02562 * 6 5 3 31 31 H 1.07997 * 120.00540 * 359.97438 * 8 7 6 32 32 H 1.07994 * 119.99858 * 180.25636 * 9 8 7 33 33 H 0.97000 * 119.99822 * 180.02562 * 15 14 12 34 34 H 1.08005 * 119.99648 * 179.97438 * 20 10 9 35 35 H 1.07998 * 120.01033 * 179.97438 * 21 20 10 36 36 H 1.08997 * 115.54868 * 272.30567 * 22 3 2 37 37 H 1.08996 * 117.50047 * 359.97438 * 23 22 3 38 38 H 1.08997 * 117.49853 * 145.02184 * 23 22 3 39 39 H 1.08999 * 117.49799 * 214.98212 * 24 22 3 40 40 H 1.09001 * 117.49554 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2199 2.0551 -0.0378 5 6 2.8341 1.4970 1.2750 6 7 1.9647 1.3494 2.4449 7 6 2.4953 1.4823 3.7312 8 6 3.8485 1.7488 3.9005 9 6 4.3711 1.8858 5.1705 10 6 3.5467 1.7459 6.2797 11 8 4.0624 1.8746 7.5293 12 6 3.2286 1.6405 8.5625 13 1 2.2282 1.2782 8.3776 14 6 3.6556 1.8649 9.8621 15 7 2.8419 1.6359 10.8706 16 14 5.3862 2.4909 10.1819 17 1 5.3817 3.9758 10.1909 18 1 5.8590 1.9892 11.4971 19 1 6.2938 2.0053 9.1115 20 6 2.1952 1.4738 6.1108 21 6 1.6708 1.3428 4.8409 22 6 2.9181 1.4595 -1.2218 23 6 2.6742 2.6618 -2.1361 24 6 2.2875 1.2554 -2.6008 25 1 -0.3634 0.3956 -0.9485 26 1 -0.3633 0.6235 0.8169 27 1 -0.3634 -1.0192 0.1316 28 1 3.6245 0.7473 1.3128 29 1 3.2770 2.4928 1.2752 30 1 1.0210 1.1588 2.3268 31 1 4.4905 1.8528 3.0383 32 1 5.4220 2.0970 5.3021 33 1 3.1405 1.7932 11.7800 34 1 1.5544 1.3646 6.9733 35 1 0.6200 1.1309 4.7096 36 1 3.9486 1.1314 -1.0861 37 1 1.8666 3.3428 -1.8674 38 1 3.5441 3.1243 -2.6023 39 1 2.9033 0.7933 -3.3724 40 1 1.2259 1.0109 -2.6376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330600472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = -14.537905 kcal Electronic energy + Delta-G solvation = -20657.089607 eV Core-core repulsion = 17438.840854 eV Total energy + Delta-G solvation = -3218.248752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.54227 -38.93418 -37.08702 -36.45165 -34.30094 -32.20151 -30.48831 -29.91235 -27.43460 -26.31149 -24.92752 -23.41695 -22.70563 -21.96582 -20.87589 -20.47433 -17.71826 -17.35488 -17.10130 -16.73390 -15.91949 -15.56235 -14.94217 -14.80435 -14.20507 -14.03735 -13.81782 -13.65747 -13.48007 -13.39061 -12.66821 -12.46128 -12.12224 -12.06679 -11.93630 -11.85895 -11.63828 -11.41913 -11.27534 -10.80976 -10.72852 -10.57494 -10.51099 -10.07063 -9.79174 -9.29168 -9.18479 -8.52428 -8.21786 -6.47407 -6.28689 -3.92853 2.14903 2.50516 3.13865 3.29821 3.33204 3.48865 3.63270 3.81041 4.34574 4.43161 4.49059 4.62885 4.64054 4.69744 4.91416 5.02626 5.07276 5.12102 5.20733 5.21446 5.28418 5.41099 5.52135 5.60300 5.61693 5.67396 5.73424 5.75401 5.85699 6.15933 6.20298 6.46573 6.81232 6.83812 6.92078 7.03601 7.37453 7.51293 7.80975 7.94782 8.11240 8.23014 9.08117 9.74722 10.80006 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040870 B = 0.003024 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.935857 B = 9256.119280 C = 9789.611834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.110 3.890 4 H 0.067 0.933 5 C 0.128 3.872 6 N -0.756 5.756 7 C 0.134 3.866 8 C -0.149 4.149 9 C -0.149 4.149 10 C 0.116 3.884 11 O -0.228 6.228 12 C -0.383 4.383 13 H 0.103 0.897 14 C 0.059 3.941 15 N -0.888 5.888 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.175 4.175 21 C -0.144 4.144 22 C -0.162 4.162 23 C -0.175 4.175 24 C -0.167 4.167 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.388 0.612 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.277 0.723 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 0.421 -24.696 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.051 3.949 4 H 0.086 0.914 5 C 0.003 3.997 6 N -0.392 5.392 7 C 0.035 3.965 8 C -0.171 4.171 9 C -0.169 4.169 10 C 0.065 3.935 11 O -0.134 6.134 12 C -0.459 4.459 13 H 0.120 0.880 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.195 4.195 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.212 4.212 24 C -0.204 4.204 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.222 0.778 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.325 0.344 -24.474 24.587 hybrid contribution -0.065 0.343 0.261 0.436 sum -2.390 0.686 -24.213 24.340 Atomic orbital electron populations 1.22876 0.81260 1.02922 0.99608 1.87988 1.19246 1.27080 1.94841 1.21896 0.94758 0.85309 0.92904 0.91449 1.21442 0.93633 1.00787 0.83874 1.44099 1.10027 1.83218 1.01815 1.17443 0.92669 1.02172 0.84167 1.20158 0.93184 1.07609 0.96192 1.20004 0.99068 1.07659 0.90124 1.18972 0.91597 0.97331 0.85593 1.83584 1.39004 1.79784 1.11075 1.20699 0.97464 1.44402 0.83366 0.87997 1.24430 0.99346 0.96573 0.93922 1.69668 1.35907 1.48109 0.99116 0.86178 0.83718 0.79254 0.77702 1.20110 1.21024 1.18427 1.21105 0.95486 1.05843 0.97054 1.20272 0.98254 1.06865 0.91278 1.22477 1.00757 1.03762 0.91041 1.23059 1.03664 0.91116 1.03396 1.22828 1.01489 0.99146 0.96925 0.94315 0.94019 0.89514 0.92084 0.91802 0.77817 0.86992 0.86548 0.91337 0.84882 0.87478 0.86940 0.88743 0.88328 0.88587 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.55 101.05 1.07 1.30 16 2 O -0.37 -3.97 9.98 -35.23 -0.35 -4.32 16 3 C 0.11 1.03 2.53 -26.73 -0.07 0.96 16 4 H 0.07 0.58 7.34 -51.93 -0.38 0.20 16 5 C 0.13 1.46 4.58 -4.04 -0.02 1.44 16 6 N -0.76 -10.30 5.63 -58.58 -0.33 -10.63 16 7 C 0.13 2.30 6.66 -83.70 -0.56 1.75 16 8 C -0.15 -2.64 9.31 -39.40 -0.37 -3.00 16 9 C -0.15 -3.03 9.99 -39.41 -0.39 -3.43 16 10 C 0.12 2.76 6.65 -39.09 -0.26 2.50 16 11 O -0.23 -6.19 8.58 -0.04 0.00 -6.19 16 12 C -0.38 -11.09 9.91 30.87 0.31 -10.79 16 13 H 0.10 3.01 5.49 -52.49 -0.29 2.72 16 14 C 0.06 1.70 5.49 -17.52 -0.10 1.60 16 15 N -0.89 -26.36 13.96 55.48 0.77 -25.58 16 16 Si 0.91 22.32 28.62 -169.99 -4.86 17.45 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.26 -6.43 7.11 56.52 0.40 -6.02 16 20 C -0.18 -3.88 9.13 -39.42 -0.36 -4.24 16 21 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 22 C -0.16 -1.32 5.41 -90.62 -0.49 -1.81 16 23 C -0.18 -1.18 10.18 -26.69 -0.27 -1.45 16 24 C -0.17 -1.19 10.12 -26.69 -0.27 -1.46 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.31 7.11 -51.93 -0.37 -0.06 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 29 H 0.06 0.70 7.96 -51.93 -0.41 0.29 16 30 H 0.39 4.77 7.18 -40.82 -0.29 4.48 16 31 H 0.11 1.68 6.73 -52.49 -0.35 1.32 16 32 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.13 3.09 5.68 -52.48 -0.30 2.79 16 35 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.11 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.09 0.60 8.04 -51.93 -0.42 0.18 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -31.25 335.17 -7.63 -38.88 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.74 Total: 5.05 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.17 Total: -19.71 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.45 Total: -36.21 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.35 Total: -10.51 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.86 Total: 17.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.25 -7.63 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330600472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.339 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds