Wall clock time and date at job start Mon Mar 30 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 113.99793 * 2 1 4 4 C 1.53006 * 112.85298 * 64.99749 * 3 2 1 5 5 N 1.46503 * 109.47003 * 49.03803 * 4 3 2 6 6 C 1.39665 * 119.99887 * 175.04476 * 5 4 3 7 7 C 1.39011 * 120.04040 * 359.97438 * 6 5 4 8 8 C 1.38149 * 120.06219 * 180.02562 * 7 6 5 9 9 C 1.38175 * 120.14295 * 359.96947 * 8 7 6 10 10 C 1.38917 * 120.08057 * 0.05514 * 9 8 7 11 11 O 1.35743 * 120.03373 * 179.97438 * 10 9 8 12 12 C 1.34831 * 117.00155 * 185.73969 * 11 10 9 13 13 H 1.08004 * 119.99931 * 5.43496 * 12 11 10 14 14 C 1.38658 * 119.99976 * 185.43274 * 12 11 10 15 15 N 1.31556 * 120.00045 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99568 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47583 * 60.00009 * 16 14 12 18 18 H 1.48504 * 109.46516 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47122 * 299.99397 * 16 14 12 20 20 C 1.38745 * 120.03973 * 179.72744 * 6 5 4 21 21 C 1.53783 * 113.68931 * 196.26869 * 3 2 1 22 22 C 1.53775 * 87.08195 * 89.12260 * 21 3 2 23 23 C 1.53782 * 87.08285 * 25.43418 * 22 21 3 24 24 H 1.09008 * 109.47182 * 304.99344 * 1 2 3 25 25 H 1.08993 * 109.47358 * 64.99447 * 1 2 3 26 26 H 1.09000 * 109.47019 * 184.99943 * 1 2 3 27 27 H 1.08994 * 109.46764 * 289.03683 * 4 3 2 28 28 H 1.09001 * 109.47043 * 169.03736 * 4 3 2 29 29 H 0.97003 * 119.99950 * 355.31291 * 5 4 3 30 30 H 1.07999 * 119.97042 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.92901 * 179.97438 * 8 7 6 32 32 H 1.08000 * 119.96006 * 180.02562 * 9 8 7 33 33 H 0.96999 * 119.99892 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.07305 * 359.96697 * 20 6 5 35 35 H 1.09000 * 113.61188 * 203.67963 * 21 3 2 36 36 H 1.09003 * 113.61123 * 334.57102 * 21 3 2 37 37 H 1.08995 * 113.61736 * 270.88354 * 22 21 3 38 38 H 1.08999 * 113.61039 * 139.97922 * 22 21 3 39 39 H 1.08992 * 113.61552 * 220.01773 * 23 22 21 40 40 H 1.09002 * 113.61595 * 89.11297 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7074 2.0906 1.2778 5 7 1.9993 1.2549 2.4452 6 6 1.8987 1.7915 3.7308 7 6 1.5223 3.1184 3.9036 8 6 1.4232 3.6497 5.1749 9 6 1.6971 2.8645 6.2784 10 6 2.0742 1.5378 6.1126 11 8 2.3435 0.7674 7.1972 12 6 2.8180 -0.4731 6.9644 13 1 3.0505 -0.7818 5.9559 14 6 3.0075 -1.3522 8.0198 15 7 2.7248 -0.9759 9.2483 16 14 3.6655 -3.0705 7.6973 17 1 5.0052 -2.9767 7.0635 18 1 3.7766 -3.8071 8.9819 19 1 2.7383 -3.7934 6.7902 20 6 2.1694 0.9992 4.8371 21 6 3.4965 1.3201 -0.3945 22 6 3.0273 1.4709 -1.8512 23 6 1.7412 2.0994 -1.2893 24 1 -0.3634 0.5894 0.8419 25 1 -0.3634 0.4344 -0.9313 26 1 -0.3633 -1.0238 0.0896 27 1 0.6554 2.3753 1.2886 28 1 2.3268 2.9871 1.3087 29 1 2.2661 0.3301 2.3251 30 1 1.3072 3.7346 3.0431 31 1 1.1310 4.6810 5.3067 32 1 1.6183 3.2828 7.2710 33 1 2.8577 -1.5908 9.9866 34 1 2.4576 -0.0333 4.7059 35 1 4.0394 2.1872 -0.0185 36 1 4.0101 0.3793 -0.1963 37 1 2.8633 0.5199 -2.3578 38 1 3.6328 2.1639 -2.4353 39 1 0.8379 1.7878 -1.8135 40 1 1.8043 3.1796 -1.1580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331066150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:52 Heat of formation + Delta-G solvation = -20.008487 kcal Electronic energy + Delta-G solvation = -21295.822797 eV Core-core repulsion = 18077.336822 eV Total energy + Delta-G solvation = -3218.485975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32003 -38.88795 -36.81996 -35.78322 -34.29389 -32.13687 -29.84443 -28.50020 -27.28122 -26.66789 -25.58133 -25.16719 -22.80651 -21.62937 -20.41754 -19.68138 -17.86659 -17.38826 -16.55763 -16.10780 -15.46761 -15.23008 -14.94761 -14.52079 -14.41453 -14.29801 -14.03447 -13.68516 -13.41402 -13.07693 -12.78821 -12.60369 -12.27650 -12.00824 -11.64514 -11.57146 -11.35651 -11.22155 -11.04970 -10.91245 -10.72288 -10.57911 -10.39471 -10.28494 -9.63154 -9.40193 -9.28628 -8.71170 -7.29643 -6.71245 -6.36756 -3.95770 2.43242 2.62269 3.18036 3.19568 3.21552 3.34005 3.85664 4.03926 4.32745 4.40297 4.55284 4.56050 4.75671 5.06501 5.15595 5.21019 5.25896 5.39855 5.43393 5.44354 5.49864 5.52395 5.61173 5.68603 5.75310 5.81085 5.96282 6.02068 6.03205 6.32499 6.42569 6.68251 6.71408 7.01829 7.11226 7.20402 7.43320 7.53944 7.73165 8.08871 8.10230 8.29809 9.09533 9.82457 10.81662 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.004335 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.434894 B = 6457.772087 C = 7462.941303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.079 3.921 4 C 0.121 3.879 5 N -0.746 5.746 6 C 0.250 3.750 7 C -0.282 4.282 8 C -0.040 4.040 9 C -0.238 4.238 10 C 0.190 3.810 11 O -0.179 6.179 12 C -0.388 4.388 13 H 0.090 0.910 14 C 0.039 3.961 15 N -0.865 5.865 16 Si 0.939 3.061 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.271 1.271 20 C -0.301 4.301 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.160 4.160 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.399 0.601 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.269 0.731 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 4.860 -20.260 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.039 3.961 4 C -0.004 4.004 5 N -0.379 5.379 6 C 0.148 3.852 7 C -0.305 4.305 8 C -0.059 4.059 9 C -0.258 4.258 10 C 0.135 3.865 11 O -0.082 6.082 12 C -0.465 4.465 13 H 0.107 0.893 14 C -0.165 4.165 15 N -0.501 5.501 16 Si 0.764 3.236 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.325 4.325 21 C -0.159 4.159 22 C -0.172 4.172 23 C -0.199 4.199 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.234 0.766 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.003 4.767 -19.897 20.557 hybrid contribution 0.106 -1.027 -0.262 1.065 sum -1.898 3.739 -20.158 20.590 Atomic orbital electron populations 1.22759 0.80866 1.02947 1.00215 1.87902 1.19935 1.25195 1.94661 1.22831 0.95812 0.84394 0.93089 1.21581 1.00063 0.94084 0.84719 1.44358 1.77764 1.13939 1.01815 1.17484 0.91969 0.91931 0.83780 1.20049 1.19055 0.94597 0.96790 1.20360 0.96163 0.97706 0.91669 1.20024 1.14526 0.92638 0.98651 1.19082 0.90049 0.90690 0.86680 1.83995 1.71301 1.25260 1.27615 1.21252 1.42392 0.87562 0.95269 0.89274 1.25259 0.97280 0.99498 0.94472 1.70032 1.45218 1.36177 0.98663 0.85818 0.79336 0.80554 0.77930 1.19574 1.20333 1.19602 1.20508 1.19736 1.01096 0.91170 1.22999 0.93742 1.03454 0.95730 1.22765 0.96787 1.01199 0.96459 1.23480 0.99174 1.00437 0.96768 0.93248 0.94138 0.89536 0.92981 0.91481 0.76573 0.88080 0.87292 0.86970 0.92100 0.85841 0.88571 0.90323 0.89844 0.91199 0.90824 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.63 101.05 1.07 1.36 16 2 O -0.36 -4.30 9.92 -35.23 -0.35 -4.65 16 3 C 0.08 0.84 0.82 -89.80 -0.07 0.76 16 4 C 0.12 1.49 3.91 -4.04 -0.02 1.47 16 5 N -0.75 -11.73 5.63 -58.65 -0.33 -12.06 16 6 C 0.25 4.83 6.65 -83.82 -0.56 4.27 16 7 C -0.28 -5.14 9.29 -39.33 -0.37 -5.51 16 8 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 9 C -0.24 -5.30 9.99 -39.35 -0.39 -5.69 16 10 C 0.19 4.79 6.64 -39.13 -0.26 4.53 16 11 O -0.18 -5.27 9.76 0.07 0.00 -5.27 16 12 C -0.39 -11.19 9.44 30.89 0.29 -10.89 16 13 H 0.09 2.40 5.30 -52.48 -0.28 2.12 16 14 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 15 N -0.87 -25.96 13.67 55.48 0.76 -25.20 16 16 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 C -0.30 -6.88 8.98 -39.20 -0.35 -7.23 16 21 C -0.12 -1.19 7.47 -25.92 -0.19 -1.38 16 22 C -0.13 -1.10 8.02 -25.92 -0.21 -1.31 16 23 C -0.16 -1.33 7.21 -25.92 -0.19 -1.52 16 24 H 0.05 0.54 6.88 -51.92 -0.36 0.18 16 25 H 0.04 0.34 6.89 -51.93 -0.36 -0.02 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 28 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 29 H 0.40 6.32 8.04 -40.82 -0.33 5.99 16 30 H 0.10 1.58 6.71 -52.49 -0.35 1.23 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.12 2.86 5.72 -52.48 -0.30 2.56 16 35 H 0.10 0.88 7.97 -51.93 -0.41 0.47 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.58 6.84 -51.93 -0.36 0.23 16 40 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -31.68 328.70 -7.33 -39.01 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.61 Total: 8.45 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.73 Total: -21.28 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.43 Total: -37.26 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.35 Total: -9.93 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.68 -7.33 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331066150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.004 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds