Wall clock time and date at job start Mon Mar 30 2020 01:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47155 * 2 1 4 4 C 1.42897 * 114.00224 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.38287 * 119.92813 * 270.27303 * 5 4 3 7 7 C 1.38114 * 120.06875 * 180.32422 * 6 5 4 8 8 C 1.38869 * 119.92676 * 359.42238 * 7 6 5 9 9 N 1.39928 * 120.06572 * 180.29801 * 8 7 6 10 10 C 1.34784 * 119.99526 * 144.91293 * 9 8 7 11 11 O 1.21283 * 119.99989 * 4.61657 * 10 9 8 12 12 C 1.50703 * 119.99893 * 184.61196 * 10 9 8 13 13 H 1.09001 * 109.47129 * 59.99993 * 12 10 9 14 14 C 1.52999 * 109.47140 * 300.00671 * 12 10 9 15 15 C 1.50692 * 109.47189 * 180.02562 * 12 10 9 16 16 H 1.08002 * 120.00238 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00143 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99926 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00188 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46666 * 90.00121 * 19 17 15 21 21 H 1.48500 * 109.47528 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47347 * 330.00649 * 19 17 15 23 23 C 1.38872 * 119.86340 * 0.28012 * 8 7 6 24 24 C 1.38107 * 119.92869 * 359.97438 * 23 8 7 25 25 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46999 * 299.99814 * 1 2 3 27 27 H 1.08994 * 109.47538 * 59.99964 * 1 2 3 28 28 H 1.09001 * 109.46999 * 240.00186 * 2 1 3 29 29 H 1.09003 * 109.47296 * 120.00019 * 2 1 3 30 30 H 1.09003 * 109.47208 * 59.99440 * 4 3 2 31 31 H 1.09003 * 109.47279 * 300.00326 * 4 3 2 32 32 H 1.08004 * 119.96559 * 0.04512 * 6 5 4 33 33 H 1.08003 * 120.03244 * 179.70212 * 7 6 5 34 34 H 0.96996 * 120.00844 * 324.91831 * 9 8 7 35 35 H 1.08998 * 109.47237 * 180.02562 * 14 12 10 36 36 H 1.09006 * 109.46981 * 299.99880 * 14 12 10 37 37 H 1.08994 * 109.47749 * 59.99515 * 14 12 10 38 38 H 0.96998 * 120.00023 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03359 * 180.02562 * 23 8 7 40 40 H 1.07998 * 119.96949 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9161 0.0001 6 6 3.9912 3.5849 -1.1980 7 6 4.3538 4.9176 -1.2008 8 6 4.5341 5.5891 0.0013 9 7 4.8954 6.9409 0.0018 10 6 4.4217 7.7646 0.9578 11 8 3.7509 7.3188 1.8645 12 6 4.7257 9.2395 0.8999 13 1 4.3299 9.6560 -0.0264 14 6 6.2403 9.4504 0.9475 15 6 4.0855 9.9308 2.0759 16 1 3.5159 9.3593 2.7938 17 6 4.2279 11.2929 2.2362 18 7 4.9219 11.9888 1.3623 19 14 3.4337 12.1500 3.6936 20 1 4.3832 12.1670 4.8353 21 1 3.0854 13.5440 3.3186 22 1 2.2012 11.4202 4.0857 23 6 4.3548 4.9162 1.2028 24 6 3.9973 3.5822 1.1989 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8332 0.9767 -0.8908 31 1 3.8340 0.9764 0.8891 32 1 3.8460 3.0634 -2.1326 33 1 4.4925 5.4381 -2.1370 34 1 5.4866 7.2853 -0.6857 35 1 6.4602 10.5171 0.9061 36 1 6.6362 9.0339 1.8738 37 1 6.7037 8.9503 0.0971 38 1 5.0217 12.9470 1.4749 39 1 4.4939 5.4359 2.1393 40 1 3.8581 3.0582 2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334167135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:18 Heat of formation + Delta-G solvation = -86.132513 kcal Electronic energy + Delta-G solvation = -20671.007807 eV Core-core repulsion = 17449.654479 eV Total energy + Delta-G solvation = -3221.353328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48365 -39.85994 -38.57885 -35.87665 -35.78790 -33.04795 -32.29040 -31.89307 -30.70999 -27.26141 -26.68546 -24.54209 -23.90640 -23.62870 -22.29925 -21.01971 -18.94799 -18.24394 -17.69826 -17.55273 -17.03097 -16.89269 -16.50905 -16.17832 -15.39497 -15.32993 -14.87858 -14.60862 -14.38312 -14.16362 -13.96208 -13.78820 -13.48989 -13.22935 -12.99497 -12.74659 -12.62652 -12.45272 -12.37232 -12.23966 -12.09486 -12.03269 -11.92122 -11.21298 -11.08562 -10.62518 -10.52425 -10.35932 -9.85359 -9.05463 -8.18048 -6.28667 0.21682 0.47061 1.39664 1.40494 1.52258 1.78385 2.20643 2.45685 2.64190 3.11779 3.17843 3.86867 3.94146 4.08437 4.16916 4.21208 4.34223 4.36878 4.43334 4.53554 4.55022 4.69485 4.71380 4.77401 4.88461 4.89389 4.96557 5.05334 5.10014 5.27312 5.30753 5.39172 5.48736 5.58879 5.63762 5.72062 5.90220 6.09704 6.16745 6.32413 6.61106 6.80114 7.31765 7.42753 8.87801 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.003231 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.799514 B = 8663.387889 C = 9274.523113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.413 6.413 4 C 0.110 3.890 5 C -0.121 4.121 6 C -0.076 4.076 7 C -0.150 4.150 8 C 0.139 3.861 9 N -0.671 5.671 10 C 0.521 3.479 11 O -0.562 6.562 12 C 0.028 3.972 13 H 0.047 0.953 14 C -0.122 4.122 15 C -0.532 4.532 16 H 0.049 0.951 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.955 3.045 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.280 1.280 23 C -0.153 4.153 24 C -0.087 4.087 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.422 0.578 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.054 0.946 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 -22.178 -8.089 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.334 6.334 4 C 0.034 3.966 5 C -0.122 4.122 6 C -0.095 4.095 7 C -0.170 4.170 8 C 0.045 3.955 9 N -0.317 5.317 10 C 0.312 3.688 11 O -0.439 6.439 12 C 0.007 3.993 13 H 0.065 0.935 14 C -0.180 4.180 15 C -0.570 4.570 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.205 1.205 23 C -0.174 4.174 24 C -0.106 4.106 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.261 0.739 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.688 -22.063 -7.477 23.306 hybrid contribution -0.004 0.928 0.763 1.201 sum -0.692 -21.136 -6.714 22.187 Atomic orbital electron populations 1.21784 0.93580 1.03288 1.02335 1.22669 0.95916 0.82831 1.01240 1.87983 1.21521 1.28213 1.95639 1.21311 0.81211 0.91711 1.02323 1.19807 1.02858 0.96407 0.93145 1.21149 0.96570 0.93292 0.98467 1.21181 1.03536 0.95863 0.96417 1.18228 0.98722 0.83738 0.94831 1.43710 1.49760 1.06782 1.31455 1.21867 0.76726 0.90295 0.79948 1.90520 1.39771 1.78135 1.35477 1.18825 0.96390 0.85468 0.98624 0.93537 1.21594 0.94107 1.03711 0.98599 1.21266 1.32897 0.93084 1.09754 0.93303 1.25574 0.95652 0.97638 0.98929 1.69933 1.40842 1.07628 1.36455 0.85594 0.78776 0.77734 0.79780 1.19910 1.19877 1.20490 1.21262 1.03397 0.94982 0.97723 1.21054 0.97672 0.93059 0.98780 0.88891 0.93070 0.92518 0.91740 0.92455 0.90163 0.91510 0.82619 0.83040 0.73924 0.90735 0.95729 0.92692 0.92479 0.87292 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.41 -9.31 10.33 -148.98 -1.54 -10.85 16 4 C 0.11 2.06 6.06 71.23 0.43 2.49 16 5 C -0.12 -2.99 5.51 -19.84 -0.11 -3.10 16 6 C -0.08 -1.73 9.69 22.25 0.22 -1.52 16 7 C -0.15 -3.86 9.97 22.39 0.22 -3.64 16 8 C 0.14 4.70 6.30 38.15 0.24 4.94 16 9 N -0.67 -23.97 5.26 -303.49 -1.60 -25.57 16 10 C 0.52 24.26 6.99 87.66 0.61 24.88 16 11 O -0.56 -30.24 12.89 -3.04 -0.04 -30.28 16 12 C 0.03 1.41 2.65 -12.29 -0.03 1.37 16 13 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.12 -5.48 8.86 71.98 0.64 -4.84 16 15 C -0.53 -30.84 8.37 25.60 0.21 -30.62 16 16 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 17 C 0.02 1.20 5.30 84.66 0.45 1.65 16 18 N -0.91 -50.77 11.32 21.45 0.24 -50.53 16 19 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 23 C -0.15 -5.55 8.70 22.39 0.19 -5.35 16 24 C -0.09 -2.57 9.69 22.25 0.22 -2.35 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 31 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.42 12.07 8.11 -92.71 -0.75 11.32 16 35 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 36 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.05 1.95 7.47 -2.39 -0.02 1.93 16 38 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.11 4.63 6.22 -2.91 -0.02 4.62 16 40 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -70.25 335.97 3.89 -66.36 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.28 Total: 20.04 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.51 Total: -16.28 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.35 Total: -76.10 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.58 Total: -41.13 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.25 3.89 -66.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334167135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.773 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds