Wall clock time and date at job start Mon Mar 30 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37096 * 119.99944 * 2 1 4 4 H 1.08001 * 120.00246 * 183.17301 * 3 2 1 5 5 C 1.38956 * 119.99891 * 3.16566 * 3 2 1 6 6 N 1.31401 * 120.00081 * 6.80145 * 5 3 2 7 7 Si 1.86807 * 119.99708 * 186.79613 * 5 3 2 8 8 H 1.48502 * 109.47072 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46980 * 120.00622 * 7 5 3 10 10 H 1.48497 * 109.46754 * 240.00193 * 7 5 3 11 11 C 1.34780 * 120.00123 * 180.02562 * 2 1 3 12 12 O 1.21289 * 119.99958 * 174.90169 * 11 2 1 13 13 C 1.50703 * 119.99671 * 354.89847 * 11 2 1 14 14 H 1.08991 * 109.47426 * 329.06256 * 13 11 2 15 15 C 1.52996 * 109.46837 * 209.05503 * 13 11 2 16 16 C 1.52996 * 109.47029 * 65.63783 * 15 13 11 17 17 C 1.53006 * 109.47323 * 174.89868 * 16 15 13 18 18 O 1.42899 * 109.46933 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46718 * 89.06220 * 13 11 2 20 20 C 1.38235 * 120.00252 * 59.72052 * 19 13 11 21 21 C 1.38240 * 119.99736 * 179.78664 * 20 19 13 22 22 C 1.38231 * 120.00102 * 0.44519 * 21 20 19 23 23 C 1.38234 * 120.00123 * 359.81226 * 22 21 20 24 24 C 1.38234 * 119.99890 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47189 * 174.31154 * 1 2 3 26 26 H 1.09004 * 109.46869 * 294.31020 * 1 2 3 27 27 H 1.08997 * 109.47024 * 54.31013 * 1 2 3 28 28 H 0.96997 * 120.00044 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47525 * 305.63593 * 15 13 11 30 30 H 1.09009 * 109.46939 * 185.63517 * 15 13 11 31 31 H 1.09006 * 109.47086 * 54.90077 * 16 15 13 32 32 H 1.09000 * 109.47267 * 294.90037 * 16 15 13 33 33 H 1.09005 * 109.46935 * 299.99843 * 17 16 15 34 34 H 1.08997 * 109.46997 * 59.99997 * 17 16 15 35 35 H 0.96701 * 113.99918 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.00120 * 0.02562 * 20 19 13 37 37 H 1.08001 * 119.99314 * 180.28065 * 21 20 19 38 38 H 1.07996 * 119.99767 * 179.83415 * 22 21 20 39 39 H 1.07994 * 120.00397 * 180.02562 * 23 22 21 40 40 H 1.08005 * 120.00036 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2293 1.1881 -0.0518 5 6 1.4573 2.3897 0.0665 6 7 0.1582 2.3891 0.2636 7 14 2.3724 4.0071 -0.1244 8 1 3.8172 3.7365 -0.3355 9 1 1.8318 4.7467 -1.2931 10 1 2.1954 4.8237 1.1032 11 6 2.1390 -1.1672 -0.0005 12 8 3.3483 -1.1692 -0.0939 13 6 1.3899 -2.4698 0.1150 14 1 0.4882 -2.3190 0.7084 15 6 2.2802 -3.5114 0.7955 16 6 2.5500 -3.0860 2.2401 17 6 3.3329 -4.1871 2.9583 18 8 3.5843 -3.7900 4.3078 19 6 1.0107 -2.9548 -1.2606 20 6 1.9935 -3.2111 -2.1984 21 6 1.6458 -3.6602 -3.4588 22 6 0.3150 -3.8441 -3.7843 23 6 -0.6680 -3.5827 -2.8482 24 6 -0.3202 -3.1378 -1.5865 25 1 -0.3633 -1.0226 -0.1019 26 1 -0.3633 0.4231 0.9366 27 1 -0.3633 0.5995 -0.8346 28 1 -0.3257 3.2285 0.3104 29 1 3.2248 -3.5894 0.2573 30 1 1.7776 -4.4787 0.7893 31 1 1.6025 -2.9203 2.7531 32 1 3.1318 -2.1643 2.2449 33 1 2.7510 -5.1088 2.9536 34 1 4.2803 -4.3528 2.4454 35 1 4.0776 -4.4419 4.8242 36 1 3.0330 -3.0643 -1.9452 37 1 2.4139 -3.8648 -4.1899 38 1 0.0433 -4.1924 -4.7698 39 1 -1.7077 -3.7267 -3.1023 40 1 -1.0882 -2.9339 -0.8550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346382177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:34 Heat of formation + Delta-G solvation = -57.993041 kcal Electronic energy + Delta-G solvation = -21955.606064 eV Core-core repulsion = 18735.472956 eV Total energy + Delta-G solvation = -3220.133109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70976 -37.98415 -36.93252 -34.99433 -33.98914 -31.76110 -31.10374 -30.58286 -27.80259 -26.33169 -24.65499 -23.46309 -22.32172 -21.24373 -20.99979 -18.43654 -17.11063 -16.92703 -16.58687 -16.34066 -15.23950 -15.07611 -14.64302 -14.28021 -14.07706 -13.86923 -13.54180 -13.12555 -12.98261 -12.83033 -12.50647 -12.04018 -11.66051 -11.53066 -11.45264 -11.37391 -11.00210 -10.86999 -10.83937 -10.59630 -10.40867 -10.34609 -10.28860 -9.98964 -9.78708 -9.00927 -8.70964 -8.60167 -8.05371 -7.79926 -6.20994 -3.76177 1.64367 1.71203 3.16408 3.26662 3.34153 3.88387 4.07957 4.15394 4.36539 4.86100 5.07896 5.19600 5.23126 5.25061 5.29123 5.35590 5.44318 5.51026 5.63883 5.74671 5.80723 5.86230 5.92905 6.08580 6.14159 6.23677 6.29467 6.37511 6.47918 6.64208 6.72712 6.76546 6.80511 7.00560 7.13479 7.30539 7.43684 7.59710 7.73260 8.10769 8.52520 9.22986 9.50102 10.03071 10.73658 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010927 B = 0.007186 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.735013 B = 3895.286842 C = 5682.810397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.444 5.444 3 C -0.298 4.298 4 H 0.105 0.895 5 C 0.025 3.975 6 N -0.888 5.888 7 Si 0.928 3.072 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.451 3.549 12 O -0.592 6.592 13 C -0.063 4.063 14 H 0.088 0.912 15 C -0.088 4.088 16 C -0.121 4.121 17 C 0.079 3.921 18 O -0.574 6.574 19 C -0.059 4.059 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.115 4.115 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.264 0.736 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.373 0.627 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 -13.302 -1.368 13.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.161 5.161 3 C -0.425 4.425 4 H 0.122 0.878 5 C -0.176 4.176 6 N -0.529 5.529 7 Si 0.755 3.245 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.238 3.762 12 O -0.478 6.478 13 C -0.085 4.085 14 H 0.106 0.894 15 C -0.126 4.126 16 C -0.159 4.159 17 C 0.002 3.998 18 O -0.379 6.379 19 C -0.060 4.060 20 C -0.120 4.120 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.133 4.133 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.219 0.781 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.622 -12.566 -1.595 12.770 hybrid contribution 0.347 0.484 0.004 0.595 sum -1.275 -12.082 -1.591 12.253 Atomic orbital electron populations 1.21818 0.80480 0.96460 1.04238 1.43699 1.05977 1.04827 1.61628 1.19866 0.93273 0.82039 1.47367 0.87768 1.25294 0.95814 0.99671 0.96855 1.70159 1.06809 1.26894 1.49070 0.85817 0.79675 0.81179 0.77806 1.19260 1.20703 1.20732 1.19527 0.87697 0.84096 0.84857 1.90484 1.14050 1.86678 1.56629 1.20287 0.99779 0.95074 0.93355 0.89381 1.21262 1.00120 0.96574 0.94616 1.21526 1.00638 0.99344 0.94350 1.22208 0.98519 0.96939 0.82146 1.86538 1.78879 1.48285 1.24183 1.19658 0.93265 0.97811 0.95224 1.21161 1.00086 0.97756 0.93009 1.21100 0.96163 1.00245 0.96557 1.21051 0.93195 1.01477 0.99115 1.21031 0.99011 1.00347 0.93732 1.21074 0.95472 0.99857 0.96898 0.95693 0.91261 0.91530 0.92489 0.90542 0.92153 0.91753 0.89970 0.94175 0.93722 0.78104 0.85459 0.86465 0.86660 0.86426 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.65 8.59 59.85 0.51 3.16 16 2 N -0.44 -11.59 3.03 -122.19 -0.37 -11.96 16 3 C -0.30 -8.45 9.57 -14.93 -0.14 -8.59 16 4 H 0.10 3.10 7.18 -52.49 -0.38 2.73 16 5 C 0.03 0.67 5.41 -17.47 -0.09 0.58 16 6 N -0.89 -23.75 9.52 55.50 0.53 -23.23 16 7 Si 0.93 21.27 29.56 -169.99 -5.02 16.24 16 8 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 C 0.45 10.87 5.55 -10.98 -0.06 10.80 16 12 O -0.59 -15.95 14.94 5.55 0.08 -15.86 16 13 C -0.06 -1.18 1.57 -92.92 -0.15 -1.33 16 14 H 0.09 1.57 6.19 -51.93 -0.32 1.24 16 15 C -0.09 -1.44 4.13 -26.74 -0.11 -1.55 16 16 C -0.12 -2.05 5.31 -26.73 -0.14 -2.19 16 17 C 0.08 1.09 7.05 37.16 0.26 1.35 16 18 O -0.57 -8.14 13.66 -35.23 -0.48 -8.63 16 19 C -0.06 -1.02 4.60 -104.62 -0.48 -1.50 16 20 C -0.10 -1.75 8.87 -39.58 -0.35 -2.10 16 21 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 22 C -0.13 -1.75 10.05 -39.59 -0.40 -2.14 16 23 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 24 C -0.11 -1.75 8.86 -39.58 -0.35 -2.11 16 25 H 0.02 0.49 4.06 -51.93 -0.21 0.28 16 26 H 0.07 1.70 7.03 -51.93 -0.36 1.33 16 27 H 0.07 1.66 7.09 -51.93 -0.37 1.29 16 28 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.08 1.33 7.12 -51.93 -0.37 0.96 16 30 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.71 7.21 -51.93 -0.37 1.33 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.37 3.21 9.12 45.56 0.42 3.62 16 36 H 0.13 2.32 7.44 -52.49 -0.39 1.93 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.65 7.47 -52.48 -0.39 1.26 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -32.28 326.61 -7.49 -39.76 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.85 Total: 8.64 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.30 Total: -9.89 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.16 Total: -35.19 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.40 Total: -24.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.28 -7.49 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346382177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.230 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds