Wall clock time and date at job start Mon Mar 30 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46895 * 2 1 4 4 O 1.41597 * 120.00026 * 255.00401 * 3 2 1 5 5 C 1.42900 * 114.00201 * 269.99989 * 4 3 2 6 6 C 1.34773 * 119.99707 * 75.00158 * 3 2 1 7 7 O 1.21284 * 120.00085 * 0.02562 * 6 3 2 8 8 C 1.50697 * 119.99804 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47066 * 180.02562 * 8 6 3 10 10 H 1.08997 * 109.47486 * 54.05268 * 9 8 6 11 11 C 1.50698 * 109.46901 * 294.05498 * 9 8 6 12 12 H 1.08002 * 120.00397 * 330.08136 * 11 9 8 13 13 C 1.37877 * 119.99983 * 150.08139 * 11 9 8 14 14 N 1.31513 * 120.00147 * 6.55933 * 13 11 9 15 15 Si 1.86806 * 120.00054 * 186.55449 * 13 11 9 16 16 H 1.48501 * 109.47229 * 179.97438 * 15 13 11 17 17 H 1.48498 * 109.47340 * 300.00345 * 15 13 11 18 18 H 1.48505 * 109.46728 * 60.00313 * 15 13 11 19 19 C 1.50704 * 109.47322 * 174.05774 * 9 8 6 20 20 C 1.38229 * 119.99815 * 64.29797 * 19 9 8 21 21 C 1.38236 * 120.00027 * 179.81055 * 20 19 9 22 22 C 1.38243 * 119.99804 * 0.40118 * 21 20 19 23 23 C 1.38236 * 119.99618 * 359.85403 * 22 21 20 24 24 C 1.38229 * 120.00074 * 359.95579 * 23 22 21 25 25 H 1.09001 * 109.46984 * 299.99640 * 1 2 3 26 26 H 1.08993 * 109.47845 * 60.00073 * 1 2 3 27 27 H 1.09003 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46724 * 240.00815 * 2 1 3 29 29 H 1.08992 * 109.47757 * 120.00477 * 2 1 3 30 30 H 1.09000 * 109.47118 * 59.99747 * 5 4 3 31 31 H 1.08996 * 109.47790 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.47049 * 300.00157 * 5 4 3 33 33 H 1.08997 * 109.47426 * 60.00323 * 8 6 3 34 34 H 1.09004 * 109.47237 * 299.99638 * 8 6 3 35 35 H 0.96997 * 119.99910 * 354.72326 * 14 13 11 36 36 H 1.08001 * 120.00499 * 0.02562 * 20 19 9 37 37 H 1.08004 * 120.00446 * 180.23518 * 21 20 19 38 38 H 1.08002 * 119.99679 * 179.83458 * 22 21 20 39 39 H 1.07995 * 119.99385 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 8 2.5534 1.9430 -1.1845 5 6 3.9619 1.7534 -1.3330 6 6 1.9580 2.1172 1.1274 7 8 1.5001 1.6359 2.1421 8 6 2.4608 3.5379 1.1276 9 6 2.2793 4.1429 2.5211 10 1 2.7550 3.4997 3.2614 11 6 0.8090 4.2616 2.8295 12 1 0.0999 4.4144 2.0293 13 6 0.3689 4.1753 4.1333 14 7 1.2383 4.1190 5.1185 15 14 -1.4623 4.1383 4.5005 16 1 -1.6712 4.0425 5.9676 17 1 -2.0948 5.3811 3.9900 18 1 -2.0767 2.9610 3.8357 19 6 2.9130 5.5096 2.5619 20 6 2.4134 6.5270 1.7706 21 6 2.9922 7.7817 1.8108 22 6 4.0759 8.0168 2.6363 23 6 4.5788 6.9979 3.4236 24 6 3.9975 5.7444 3.3862 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 4.1847 0.6866 -1.3538 31 1 4.2943 2.2125 -2.2639 32 1 4.4813 2.2167 -0.4941 33 1 1.8972 4.1229 0.4009 34 1 3.5179 3.5492 0.8619 35 1 2.1871 4.0610 4.9253 36 1 1.5686 6.3426 1.1235 37 1 2.5994 8.5776 1.1954 38 1 4.5298 8.9964 2.6657 39 1 5.4257 7.1815 4.0681 40 1 4.3902 4.9485 4.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349278954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:08 Heat of formation + Delta-G solvation = -11.129809 kcal Electronic energy + Delta-G solvation = -22120.052750 eV Core-core repulsion = 18901.951783 eV Total energy + Delta-G solvation = -3218.100966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.45578 -38.39411 -36.96258 -34.49183 -33.48224 -31.37838 -30.11381 -30.00276 -28.59788 -26.48517 -25.13437 -23.38458 -22.32726 -21.63129 -20.07949 -19.53715 -17.28989 -16.60219 -16.48134 -15.91275 -15.57674 -14.60982 -14.23381 -14.14178 -14.03111 -13.77721 -13.63901 -13.46015 -13.02611 -12.60334 -12.34935 -12.28603 -12.04283 -11.92264 -11.62954 -11.44796 -11.09382 -10.79414 -10.69309 -10.42559 -10.41915 -10.13856 -10.03191 -9.64093 -9.08431 -8.67732 -8.58597 -8.26221 -8.12914 -7.62678 -6.22963 -3.90587 2.17080 2.20357 2.28930 3.25330 3.50981 3.56346 3.71775 4.41505 4.61861 4.68502 5.17821 5.19876 5.25236 5.40537 5.44912 5.49530 5.55738 5.60412 5.64624 5.70430 5.77540 5.88204 6.02009 6.10555 6.14775 6.17998 6.33280 6.44040 6.47487 6.69447 6.79469 6.80933 6.93637 7.20138 7.23433 7.38406 7.72636 7.85116 7.87764 8.23487 8.51798 8.77553 8.98303 9.78588 11.17237 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.007702 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.930297 B = 3634.528886 C = 5251.721192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.494 5.494 4 O -0.147 6.147 5 C -0.006 4.006 6 C 0.526 3.474 7 O -0.478 6.478 8 C -0.110 4.110 9 C 0.071 3.929 10 H 0.050 0.950 11 C -0.569 4.569 12 H 0.046 0.954 13 C 0.032 3.968 14 N -0.905 5.905 15 Si 1.062 2.938 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.288 1.288 19 C -0.031 4.031 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.125 4.125 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 -2.907 -11.789 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.278 5.278 4 O -0.151 6.151 5 C -0.104 4.104 6 C 0.316 3.684 7 O -0.348 6.348 8 C -0.150 4.150 9 C 0.051 3.949 10 H 0.068 0.932 11 C -0.606 4.606 12 H 0.064 0.936 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.891 3.109 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.215 1.215 19 C -0.031 4.031 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.171 4.171 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.187 -3.094 -10.075 11.340 hybrid contribution 1.399 0.053 -1.403 1.982 sum 5.586 -3.040 -11.478 13.123 Atomic orbital electron populations 1.22124 0.95181 1.01913 1.03460 1.21524 0.95216 0.81153 1.02252 1.50651 1.60711 1.12942 1.03514 1.90597 1.21915 1.75220 1.27396 1.23327 0.83301 1.01160 1.02593 1.21116 0.78206 0.88578 0.80476 1.90795 1.43034 1.71601 1.29381 1.21666 0.99430 0.91690 1.02223 1.17906 0.97649 0.88248 0.91052 0.93205 1.21545 0.89702 1.54089 0.95282 0.93554 1.25590 1.06107 0.93109 0.92524 1.70763 1.03729 1.45667 1.33917 0.83652 0.74857 0.76307 0.76071 1.20952 1.21716 1.21453 1.20797 0.91140 0.98808 0.92387 1.20929 0.99159 0.92451 0.99959 1.21016 0.97001 0.96914 0.99785 1.20825 0.98565 0.98341 0.99372 1.20954 1.00079 0.93747 0.99490 1.21053 0.96907 0.96719 1.00178 0.90920 0.92422 0.91816 0.90488 0.90394 0.93403 0.88129 0.92886 0.89708 0.91964 0.91903 0.86687 0.87429 0.87587 0.87482 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.04 37.15 0.37 -2.02 16 2 C 0.12 1.69 6.38 -4.04 -0.03 1.66 16 3 N -0.49 -8.35 3.02 -60.30 -0.18 -8.53 16 4 O -0.15 -2.18 10.84 -11.47 -0.12 -2.31 16 5 C -0.01 -0.06 11.44 101.05 1.16 1.10 16 6 C 0.53 10.96 7.31 -10.99 -0.08 10.88 16 7 O -0.48 -11.82 14.09 5.55 0.08 -11.74 16 8 C -0.11 -2.25 4.25 -27.88 -0.12 -2.37 16 9 C 0.07 1.71 1.31 -92.92 -0.12 1.59 16 10 H 0.05 1.34 6.23 -51.93 -0.32 1.02 16 11 C -0.57 -15.57 6.40 -34.44 -0.22 -15.79 16 12 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 13 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 14 N -0.91 -27.61 13.63 55.43 0.76 -26.85 16 15 Si 1.06 26.35 29.91 -169.99 -5.08 21.27 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.03 -0.69 4.77 -104.63 -0.50 -1.19 16 20 C -0.11 -2.22 8.88 -39.59 -0.35 -2.57 16 21 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 22 C -0.15 -2.68 10.05 -39.58 -0.40 -3.07 16 23 C -0.12 -2.30 10.05 -39.59 -0.40 -2.70 16 24 C -0.13 -2.74 9.67 -39.59 -0.38 -3.13 16 25 H 0.07 1.29 7.34 -51.93 -0.38 0.91 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.13 7.90 -51.93 -0.41 0.72 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.62 7.13 -51.93 -0.37 0.25 16 33 H 0.08 1.71 7.87 -51.93 -0.41 1.30 16 34 H 0.06 1.13 7.12 -51.93 -0.37 0.76 16 35 H 0.27 8.12 6.68 -40.82 -0.27 7.85 16 36 H 0.12 2.36 7.80 -52.49 -0.41 1.95 16 37 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 2.27 7.95 -52.49 -0.42 1.85 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -32.71 337.58 -6.98 -39.70 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.95 Total: 2.92 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.56 Total: -19.54 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.57 Total: -35.38 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.05 Total: -14.05 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.08 Total: 21.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.71 -6.98 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349278954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.567 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds