Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46895 * 2 1 4 4 O 1.41597 * 120.00026 * 255.00401 * 3 2 1 5 5 C 1.42900 * 114.00201 * 269.99989 * 4 3 2 6 6 C 1.34773 * 119.99707 * 75.00158 * 3 2 1 7 7 O 1.21284 * 120.00085 * 0.02562 * 6 3 2 8 8 C 1.50697 * 119.99804 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47066 * 180.02562 * 8 6 3 10 10 H 1.08997 * 109.47486 * 54.05268 * 9 8 6 11 11 C 1.50698 * 109.46901 * 294.05498 * 9 8 6 12 12 H 1.08002 * 120.00397 * 330.08136 * 11 9 8 13 13 C 1.37877 * 119.99983 * 150.08139 * 11 9 8 14 14 N 1.31513 * 120.00147 * 6.55933 * 13 11 9 15 15 Si 1.86806 * 120.00054 * 186.55449 * 13 11 9 16 16 H 1.48501 * 109.47229 * 179.97438 * 15 13 11 17 17 H 1.48498 * 109.47340 * 300.00345 * 15 13 11 18 18 H 1.48505 * 109.46728 * 60.00313 * 15 13 11 19 19 C 1.50704 * 109.47322 * 174.05774 * 9 8 6 20 20 C 1.38229 * 119.99815 * 64.29797 * 19 9 8 21 21 C 1.38236 * 120.00027 * 179.81055 * 20 19 9 22 22 C 1.38243 * 119.99804 * 0.40118 * 21 20 19 23 23 C 1.38236 * 119.99618 * 359.85403 * 22 21 20 24 24 C 1.38229 * 120.00074 * 359.95579 * 23 22 21 25 25 H 1.09001 * 109.46984 * 299.99640 * 1 2 3 26 26 H 1.08993 * 109.47845 * 60.00073 * 1 2 3 27 27 H 1.09003 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46724 * 240.00815 * 2 1 3 29 29 H 1.08992 * 109.47757 * 120.00477 * 2 1 3 30 30 H 1.09000 * 109.47118 * 59.99747 * 5 4 3 31 31 H 1.08996 * 109.47790 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.47049 * 300.00157 * 5 4 3 33 33 H 1.08997 * 109.47426 * 60.00323 * 8 6 3 34 34 H 1.09004 * 109.47237 * 299.99638 * 8 6 3 35 35 H 0.96997 * 119.99910 * 354.72326 * 14 13 11 36 36 H 1.08001 * 120.00499 * 0.02562 * 20 19 9 37 37 H 1.08004 * 120.00446 * 180.23518 * 21 20 19 38 38 H 1.08002 * 119.99679 * 179.83458 * 22 21 20 39 39 H 1.07995 * 119.99385 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 8 2.5534 1.9430 -1.1845 5 6 3.9619 1.7534 -1.3330 6 6 1.9580 2.1172 1.1274 7 8 1.5001 1.6359 2.1421 8 6 2.4608 3.5379 1.1276 9 6 2.2793 4.1429 2.5211 10 1 2.7550 3.4997 3.2614 11 6 0.8090 4.2616 2.8295 12 1 0.0999 4.4144 2.0293 13 6 0.3689 4.1753 4.1333 14 7 1.2383 4.1190 5.1185 15 14 -1.4623 4.1383 4.5005 16 1 -1.6712 4.0425 5.9676 17 1 -2.0948 5.3811 3.9900 18 1 -2.0767 2.9610 3.8357 19 6 2.9130 5.5096 2.5619 20 6 2.4134 6.5270 1.7706 21 6 2.9922 7.7817 1.8108 22 6 4.0759 8.0168 2.6363 23 6 4.5788 6.9979 3.4236 24 6 3.9975 5.7444 3.3862 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 4.1847 0.6866 -1.3538 31 1 4.2943 2.2125 -2.2639 32 1 4.4813 2.2167 -0.4941 33 1 1.8972 4.1229 0.4009 34 1 3.5179 3.5492 0.8619 35 1 2.1871 4.0610 4.9253 36 1 1.5686 6.3426 1.1235 37 1 2.5994 8.5776 1.1954 38 1 4.5298 8.9964 2.6657 39 1 5.4257 7.1815 4.0681 40 1 4.3902 4.9485 4.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349278954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = -30.278930 kcal Electronic energy + Delta-G solvation = -22120.883118 eV Core-core repulsion = 18901.951783 eV Total energy + Delta-G solvation = -3218.931335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01441 -39.92531 -38.32494 -36.24873 -34.83545 -33.33854 -31.62951 -31.42382 -30.06795 -27.61557 -26.89442 -25.11218 -23.76338 -23.16594 -21.66262 -21.07083 -18.98673 -18.41859 -17.84482 -17.36678 -16.88339 -16.22742 -15.73604 -15.66869 -15.47614 -15.30607 -15.14437 -14.88245 -14.58549 -14.06925 -14.00116 -13.78363 -13.55245 -13.20409 -13.11980 -12.79139 -12.72758 -12.61400 -12.09438 -12.06639 -11.95111 -11.74152 -11.57711 -11.49697 -10.74001 -10.64831 -10.33985 -10.02268 -9.65249 -9.28768 -8.46573 -6.12480 0.66650 0.71739 0.96931 1.47531 1.58191 1.63872 1.73872 2.60118 3.06133 3.13445 3.38555 4.09154 4.11937 4.16805 4.22450 4.26982 4.28161 4.35447 4.39594 4.43618 4.44936 4.48371 4.58198 4.71381 4.75005 4.82642 4.87205 4.92758 5.07754 5.21009 5.26955 5.38815 5.40129 5.50726 5.73461 5.80845 5.93233 6.22277 6.29068 6.37373 6.50283 6.76807 7.22098 7.62659 8.93707 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.007702 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.930297 B = 3634.528886 C = 5251.721192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.489 5.489 4 O -0.154 6.154 5 C -0.013 4.013 6 C 0.522 3.478 7 O -0.531 6.531 8 C -0.102 4.102 9 C 0.075 3.925 10 H 0.010 0.990 11 C -0.560 4.560 12 H 0.036 0.964 13 C -0.022 4.022 14 N -0.939 5.939 15 Si 1.098 2.902 16 H -0.287 1.287 17 H -0.269 1.269 18 H -0.284 1.284 19 C -0.057 4.057 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.135 0.865 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.258 0.742 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 -1.631 -14.154 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.271 5.271 4 O -0.157 6.157 5 C -0.110 4.110 6 C 0.312 3.688 7 O -0.406 6.406 8 C -0.142 4.142 9 C 0.055 3.945 10 H 0.028 0.972 11 C -0.598 4.598 12 H 0.054 0.946 13 C -0.221 4.221 14 N -0.577 5.577 15 Si 0.922 3.078 16 H -0.212 1.212 17 H -0.194 1.194 18 H -0.210 1.210 19 C -0.057 4.057 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.161 4.161 23 C -0.141 4.141 24 C -0.170 4.170 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.153 0.847 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.028 -1.820 -12.513 13.608 hybrid contribution 1.287 -0.329 -0.844 1.573 sum 6.315 -2.149 -13.357 14.930 Atomic orbital electron populations 1.22076 0.95256 1.03358 1.01432 1.21774 0.95176 0.79671 1.03857 1.50404 1.59913 1.13396 1.03338 1.90580 1.24359 1.75523 1.25286 1.23624 0.80792 1.02762 1.03825 1.21086 0.77795 0.88849 0.81025 1.90770 1.45487 1.72675 1.31694 1.21513 1.00868 0.91744 1.00050 1.17711 0.95622 0.89218 0.91900 0.97167 1.21764 0.91465 1.51999 0.94539 0.94560 1.26740 1.09001 0.93236 0.93133 1.70854 1.03354 1.49006 1.34471 0.83188 0.71487 0.77297 0.75815 1.21224 1.19424 1.20974 1.20600 0.92713 0.97994 0.94402 1.20991 0.99571 0.93450 1.00213 1.21401 0.96628 0.96430 0.99712 1.21317 0.97612 0.99662 0.97523 1.21303 1.00504 0.92648 0.99691 1.21119 0.97510 0.98063 1.00322 0.95234 0.91942 0.88701 0.86421 0.91120 0.91627 0.84683 0.93823 0.89368 0.89754 0.93145 0.87229 0.83983 0.83427 0.84546 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 10.04 71.98 0.72 -3.83 16 2 C 0.11 3.12 6.38 86.38 0.55 3.68 16 3 N -0.49 -16.31 3.02 -463.07 -1.40 -17.70 16 4 O -0.15 -4.26 10.84 -38.78 -0.42 -4.68 16 5 C -0.01 -0.25 11.44 113.37 1.30 1.05 16 6 C 0.52 22.48 7.31 87.66 0.64 23.12 16 7 O -0.53 -27.85 14.09 -3.04 -0.04 -27.90 16 8 C -0.10 -4.29 4.25 29.85 0.13 -4.16 16 9 C 0.07 3.79 1.31 -12.29 -0.02 3.78 16 10 H 0.01 0.59 6.23 -2.39 -0.01 0.57 16 11 C -0.56 -31.95 6.40 25.60 0.16 -31.79 16 12 H 0.04 2.08 7.82 -2.91 -0.02 2.06 16 13 C -0.02 -1.35 5.45 84.65 0.46 -0.88 16 14 N -0.94 -60.06 13.63 21.45 0.29 -59.77 16 15 Si 1.10 54.63 29.91 68.60 2.05 56.68 16 16 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 19 C -0.06 -2.59 4.77 -19.87 -0.09 -2.69 16 20 C -0.12 -5.09 8.88 22.27 0.20 -4.89 16 21 C -0.12 -4.15 10.05 22.27 0.22 -3.93 16 22 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 23 C -0.12 -4.31 10.05 22.27 0.22 -4.08 16 24 C -0.15 -6.50 9.67 22.27 0.22 -6.28 16 25 H 0.03 1.07 7.34 -2.39 -0.02 1.05 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.05 7.90 -2.39 -0.02 2.03 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 0.94 7.13 -2.38 -0.02 0.92 16 33 H 0.09 3.61 7.87 -2.39 -0.02 3.59 16 34 H 0.08 3.10 7.12 -2.38 -0.02 3.08 16 35 H 0.26 16.59 6.68 -92.71 -0.62 15.97 16 36 H 0.11 4.50 7.80 -2.91 -0.02 4.47 16 37 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.10 4.25 7.95 -2.91 -0.02 4.23 16 Total: -1.00 -75.72 337.58 6.58 -69.13 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.16 Total: 19.40 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.94 Total: -35.16 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.11 Total: -77.47 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.46 Total: -32.58 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 2.05 Total: 56.68 kcal Total: -75.72 6.58 -69.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349278954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.856 kcal (2) G-P(sol) polarization free energy of solvation -75.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds