Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46770 * 2 1 4 4 N 1.41600 * 113.99816 * 185.69806 * 3 2 1 5 5 C 1.46500 * 120.00191 * 273.65932 * 4 3 2 6 6 C 1.52999 * 109.47582 * 255.00722 * 5 4 3 7 7 C 1.34777 * 120.00533 * 93.66413 * 4 3 2 8 8 O 1.21270 * 120.00644 * 185.10754 * 7 4 3 9 9 C 1.50708 * 119.99567 * 5.10625 * 7 4 3 10 10 H 1.09006 * 109.47059 * 35.76162 * 9 7 4 11 11 C 1.50701 * 109.46942 * 275.76155 * 9 7 4 12 12 H 1.08002 * 120.00001 * 123.60564 * 11 9 7 13 13 C 1.37877 * 120.00175 * 303.32627 * 11 9 7 14 14 N 1.31517 * 119.99419 * 5.55179 * 13 11 9 15 15 Si 1.86793 * 120.00165 * 185.54815 * 13 11 9 16 16 H 1.48503 * 109.47392 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47222 * 120.00135 * 15 13 11 18 18 H 1.48497 * 109.47333 * 240.00058 * 15 13 11 19 19 C 1.50699 * 109.47177 * 155.76098 * 9 7 4 20 20 C 1.38240 * 119.99903 * 300.61133 * 19 9 7 21 21 C 1.38236 * 119.99952 * 179.81045 * 20 19 9 22 22 C 1.38231 * 119.99685 * 0.39402 * 21 20 19 23 23 C 1.38232 * 120.00519 * 359.86188 * 22 21 20 24 24 C 1.38231 * 120.00197 * 120.88233 * 19 9 7 25 25 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47514 * 299.99878 * 1 2 3 27 27 H 1.09005 * 109.47681 * 59.99994 * 1 2 3 28 28 H 1.08999 * 109.47032 * 240.00720 * 2 1 3 29 29 H 1.08992 * 109.47414 * 119.99802 * 2 1 3 30 30 H 1.09002 * 109.46775 * 15.00252 * 5 4 3 31 31 H 1.08997 * 109.47358 * 134.99679 * 5 4 3 32 32 H 1.08997 * 109.47111 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.46682 * 299.99587 * 6 5 4 34 34 H 1.08997 * 109.47626 * 59.99121 * 6 5 4 35 35 H 0.97000 * 119.99610 * 180.02562 * 14 13 11 36 36 H 1.08007 * 119.99903 * 359.97438 * 20 19 9 37 37 H 1.07998 * 119.99868 * 180.23284 * 21 20 19 38 38 H 1.08005 * 119.99778 * 179.83405 * 22 21 20 39 39 H 1.08005 * 120.00582 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.99862 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 7 3.4118 1.4613 -0.1284 5 6 4.2637 1.3977 1.0617 6 6 4.7638 2.8019 1.4066 7 6 3.9660 1.6284 -1.3456 8 8 5.1726 1.6332 -1.4670 9 6 3.0861 1.8093 -2.5557 10 1 2.2031 2.3859 -2.2800 11 6 2.6627 0.4595 -3.0751 12 1 1.6134 0.2258 -3.1791 13 6 3.6148 -0.4751 -3.4230 14 7 4.8878 -0.2312 -3.1999 15 14 3.0968 -2.0875 -4.2110 16 1 1.6189 -2.1165 -4.3536 17 1 3.7252 -2.2079 -5.5510 18 1 3.5343 -3.2196 -3.3555 19 6 3.8506 2.5428 -3.6275 20 6 4.3542 3.8054 -3.3760 21 6 5.0588 4.4766 -4.3578 22 6 5.2527 3.8886 -5.5937 23 6 4.7446 2.6282 -5.8469 24 6 4.0434 1.9554 -4.8638 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.6893 1.0009 1.8988 31 1 5.1154 0.7468 0.8645 32 1 5.3980 2.7544 2.2918 33 1 5.3382 3.1987 0.5695 34 1 3.9121 3.4528 1.6038 35 1 5.5577 -0.8885 -3.4450 36 1 4.1994 4.2663 -2.4116 37 1 5.4555 5.4614 -4.1601 38 1 5.8009 4.4141 -6.3617 39 1 4.8957 2.1689 -6.8127 40 1 3.6465 0.9705 -5.0616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471251936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = 0.252298 kcal Electronic energy + Delta-G solvation = -22896.675251 eV Core-core repulsion = 19679.067850 eV Total energy + Delta-G solvation = -3217.607401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.04206 -37.75921 -36.30839 -33.94932 -33.10307 -31.04828 -30.59116 -29.67413 -28.60887 -27.04730 -24.16722 -22.71686 -22.25645 -21.24647 -20.25969 -19.07465 -17.17186 -16.49613 -15.70969 -15.31873 -14.96930 -14.52338 -14.36148 -14.06223 -13.69966 -13.55780 -12.99414 -12.85169 -12.43679 -12.38772 -12.16811 -12.07241 -11.83128 -11.57419 -11.53988 -11.34219 -11.04199 -10.91209 -10.72353 -10.56267 -10.35268 -10.06562 -9.68369 -9.58906 -9.35511 -8.59232 -8.25082 -7.94465 -7.78856 -7.38807 -6.08144 -4.26313 2.46956 2.57362 2.86628 3.17010 3.28058 3.29332 4.12179 4.31722 4.83637 5.06502 5.18281 5.48246 5.50594 5.63727 5.72133 5.81572 5.82383 5.91041 5.92135 6.01299 6.06403 6.12348 6.35963 6.38152 6.44034 6.52213 6.60008 6.61193 6.70897 6.82741 6.95203 7.09300 7.21477 7.48244 7.49283 7.62261 7.71871 7.83711 8.14344 8.27895 8.52735 8.80281 9.35835 9.61298 10.86947 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.009499 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.245116 B = 2946.892293 C = 4178.627364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.019 3.981 3 O -0.146 6.146 4 N -0.493 5.493 5 C 0.118 3.882 6 C -0.162 4.162 7 C 0.550 3.450 8 O -0.492 6.492 9 C 0.064 3.936 10 H 0.058 0.942 11 C -0.531 4.531 12 H 0.068 0.932 13 C 0.067 3.933 14 N -0.828 5.828 15 Si 0.876 3.124 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.284 1.284 19 C -0.013 4.013 20 C -0.126 4.126 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.059 4.059 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 2.745 4.427 6.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 O -0.151 6.151 4 N -0.275 5.275 5 C -0.004 4.004 6 C -0.221 4.221 7 C 0.341 3.659 8 O -0.363 6.363 9 C 0.043 3.957 10 H 0.076 0.924 11 C -0.569 4.569 12 H 0.086 0.914 13 C -0.141 4.141 14 N -0.460 5.460 15 Si 0.703 3.297 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.210 1.210 19 C -0.014 4.014 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.077 4.077 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.178 2.845 4.334 6.080 hybrid contribution -0.090 -1.430 -0.256 1.455 sum -3.268 1.415 4.077 5.413 Atomic orbital electron populations 1.21643 0.93709 1.01974 1.02587 1.23049 0.94732 0.86325 1.01789 1.90472 1.04047 1.24797 1.95805 1.50525 0.93818 1.76439 1.06685 1.21374 0.93926 0.97536 0.87521 1.22089 1.01071 0.97449 1.01464 1.21523 0.88991 0.73557 0.81813 1.90622 1.14910 1.48567 1.82203 1.17825 0.92815 0.96815 0.88271 0.92393 1.20675 0.93258 0.97203 1.45716 0.91390 1.25160 0.95200 0.98151 0.95629 1.70283 0.99482 1.34163 1.42075 0.86771 0.79210 0.84058 0.79682 1.19303 1.20503 1.20980 1.19916 0.94746 0.91614 0.95125 1.20905 0.99648 0.95876 0.97970 1.20766 1.01285 0.99364 0.94281 1.20784 1.02349 0.96335 0.96838 1.21070 1.00776 0.95364 0.99093 1.21357 0.95133 0.99174 0.92053 0.91382 0.92728 0.91420 0.89686 0.94546 0.91238 0.90900 0.92327 0.91755 0.92657 0.92620 0.88143 0.87956 0.88066 0.87943 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.28 37.15 0.38 -1.57 16 2 C 0.02 0.34 7.04 37.15 0.26 0.60 16 3 O -0.15 -2.87 10.22 -11.47 -0.12 -2.99 16 4 N -0.49 -10.42 3.01 -60.29 -0.18 -10.61 16 5 C 0.12 2.11 6.38 -4.04 -0.03 2.08 16 6 C -0.16 -2.57 10.05 37.16 0.37 -2.20 16 7 C 0.55 13.38 5.50 -10.98 -0.06 13.32 16 8 O -0.49 -13.35 13.46 5.57 0.07 -13.27 16 9 C 0.06 1.55 2.20 -94.07 -0.21 1.35 16 10 H 0.06 1.37 7.74 -51.93 -0.40 0.96 16 11 C -0.53 -13.14 6.00 -34.44 -0.21 -13.34 16 12 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.07 1.69 3.27 -17.82 -0.06 1.63 16 14 N -0.83 -22.60 9.55 55.43 0.53 -22.07 16 15 Si 0.88 19.64 29.54 -169.99 -5.02 14.61 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.01 -0.31 4.39 -104.62 -0.46 -0.77 16 20 C -0.13 -2.79 9.03 -39.58 -0.36 -3.14 16 21 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 22 C -0.14 -2.84 10.05 -39.59 -0.40 -3.23 16 23 C -0.14 -3.05 10.05 -39.58 -0.40 -3.45 16 24 C -0.06 -1.41 7.97 -39.58 -0.32 -1.73 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.74 6.42 -51.93 -0.33 1.41 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.40 7.83 -51.93 -0.41 0.99 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.17 7.53 -51.93 -0.39 0.78 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.10 2.12 8.04 -52.48 -0.42 1.69 16 37 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 40 H 0.13 3.34 5.21 -52.48 -0.27 3.07 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -29.14 329.41 -7.62 -36.76 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.00 Total: 6.23 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.87 Total: -13.63 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.35 Total: -32.67 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.04 Total: -16.26 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.14 -7.62 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471251936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.008 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds