Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46770 * 2 1 4 4 N 1.41600 * 113.99816 * 185.69806 * 3 2 1 5 5 C 1.46500 * 120.00191 * 273.65932 * 4 3 2 6 6 C 1.52999 * 109.47582 * 255.00722 * 5 4 3 7 7 C 1.34777 * 120.00533 * 93.66413 * 4 3 2 8 8 O 1.21270 * 120.00644 * 185.10754 * 7 4 3 9 9 C 1.50708 * 119.99567 * 5.10625 * 7 4 3 10 10 H 1.09006 * 109.47059 * 35.76162 * 9 7 4 11 11 C 1.50701 * 109.46942 * 275.76155 * 9 7 4 12 12 H 1.08002 * 120.00001 * 123.60564 * 11 9 7 13 13 C 1.37877 * 120.00175 * 303.32627 * 11 9 7 14 14 N 1.31517 * 119.99419 * 5.55179 * 13 11 9 15 15 Si 1.86793 * 120.00165 * 185.54815 * 13 11 9 16 16 H 1.48503 * 109.47392 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47222 * 120.00135 * 15 13 11 18 18 H 1.48497 * 109.47333 * 240.00058 * 15 13 11 19 19 C 1.50699 * 109.47177 * 155.76098 * 9 7 4 20 20 C 1.38240 * 119.99903 * 300.61133 * 19 9 7 21 21 C 1.38236 * 119.99952 * 179.81045 * 20 19 9 22 22 C 1.38231 * 119.99685 * 0.39402 * 21 20 19 23 23 C 1.38232 * 120.00519 * 359.86188 * 22 21 20 24 24 C 1.38231 * 120.00197 * 120.88233 * 19 9 7 25 25 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47514 * 299.99878 * 1 2 3 27 27 H 1.09005 * 109.47681 * 59.99994 * 1 2 3 28 28 H 1.08999 * 109.47032 * 240.00720 * 2 1 3 29 29 H 1.08992 * 109.47414 * 119.99802 * 2 1 3 30 30 H 1.09002 * 109.46775 * 15.00252 * 5 4 3 31 31 H 1.08997 * 109.47358 * 134.99679 * 5 4 3 32 32 H 1.08997 * 109.47111 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.46682 * 299.99587 * 6 5 4 34 34 H 1.08997 * 109.47626 * 59.99121 * 6 5 4 35 35 H 0.97000 * 119.99610 * 180.02562 * 14 13 11 36 36 H 1.08007 * 119.99903 * 359.97438 * 20 19 9 37 37 H 1.07998 * 119.99868 * 180.23284 * 21 20 19 38 38 H 1.08005 * 119.99778 * 179.83405 * 22 21 20 39 39 H 1.08005 * 120.00582 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.99862 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 7 3.4118 1.4613 -0.1284 5 6 4.2637 1.3977 1.0617 6 6 4.7638 2.8019 1.4066 7 6 3.9660 1.6284 -1.3456 8 8 5.1726 1.6332 -1.4670 9 6 3.0861 1.8093 -2.5557 10 1 2.2031 2.3859 -2.2800 11 6 2.6627 0.4595 -3.0751 12 1 1.6134 0.2258 -3.1791 13 6 3.6148 -0.4751 -3.4230 14 7 4.8878 -0.2312 -3.1999 15 14 3.0968 -2.0875 -4.2110 16 1 1.6189 -2.1165 -4.3536 17 1 3.7252 -2.2079 -5.5510 18 1 3.5343 -3.2196 -3.3555 19 6 3.8506 2.5428 -3.6275 20 6 4.3542 3.8054 -3.3760 21 6 5.0588 4.4766 -4.3578 22 6 5.2527 3.8886 -5.5937 23 6 4.7446 2.6282 -5.8469 24 6 4.0434 1.9554 -4.8638 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.6893 1.0009 1.8988 31 1 5.1154 0.7468 0.8645 32 1 5.3980 2.7544 2.2918 33 1 5.3382 3.1987 0.5695 34 1 3.9121 3.4528 1.6038 35 1 5.5577 -0.8885 -3.4450 36 1 4.1994 4.2663 -2.4116 37 1 5.4555 5.4614 -4.1601 38 1 5.8009 4.4141 -6.3617 39 1 4.8957 2.1689 -6.8127 40 1 3.6465 0.9705 -5.0616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471251936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = -14.980170 kcal Electronic energy + Delta-G solvation = -22897.335781 eV Core-core repulsion = 19679.067850 eV Total energy + Delta-G solvation = -3218.267931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80271 -39.40815 -37.98109 -35.69355 -34.75379 -32.79829 -32.01112 -31.35581 -30.18663 -28.76627 -25.99561 -24.23286 -23.65700 -22.92198 -21.90728 -20.79415 -18.99931 -18.14818 -17.43030 -17.01502 -16.78082 -16.17220 -15.79381 -15.70791 -15.40012 -15.02879 -14.71147 -14.57866 -14.09358 -13.92417 -13.76400 -13.49684 -13.31033 -13.04566 -12.98119 -12.84254 -12.79431 -12.52077 -12.28976 -12.19131 -11.96735 -11.78858 -11.46154 -11.21202 -11.10878 -10.50394 -10.10413 -9.63142 -9.46398 -9.10545 -8.02924 -6.24824 0.79827 0.90763 1.28246 1.36562 1.41939 1.50231 2.27643 2.44733 3.13078 3.22717 3.59513 4.13561 4.21816 4.27409 4.33495 4.34345 4.40728 4.47009 4.50280 4.59954 4.66689 4.74676 4.79875 4.92813 4.97405 5.05708 5.12853 5.14496 5.19554 5.29311 5.34360 5.41650 5.53902 5.67962 5.84036 5.88480 5.94364 6.00833 6.40669 6.49967 6.69424 6.98469 7.39295 7.79319 8.91044 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.009499 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.245116 B = 2946.892293 C = 4178.627364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.016 3.984 3 O -0.150 6.150 4 N -0.497 5.497 5 C 0.113 3.887 6 C -0.152 4.152 7 C 0.550 3.450 8 O -0.528 6.528 9 C 0.059 3.941 10 H 0.052 0.948 11 C -0.526 4.526 12 H 0.066 0.934 13 C 0.035 3.965 14 N -0.858 5.858 15 Si 0.929 3.071 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.288 1.288 19 C -0.038 4.038 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.086 4.086 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.255 0.745 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 3.329 4.770 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 O -0.156 6.156 4 N -0.277 5.277 5 C -0.007 4.007 6 C -0.210 4.210 7 C 0.342 3.658 8 O -0.403 6.403 9 C 0.038 3.962 10 H 0.070 0.930 11 C -0.564 4.564 12 H 0.084 0.916 13 C -0.170 4.170 14 N -0.492 5.492 15 Si 0.755 3.245 16 H -0.182 1.182 17 H -0.207 1.207 18 H -0.214 1.214 19 C -0.039 4.039 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.168 4.168 24 C -0.104 4.104 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.789 3.430 4.702 6.945 hybrid contribution 0.032 -1.564 -0.321 1.597 sum -3.758 1.866 4.381 6.066 Atomic orbital electron populations 1.21649 0.90647 1.03680 1.03108 1.23193 0.97097 0.84971 1.00894 1.90451 1.02990 1.26416 1.95697 1.50402 0.94918 1.75510 1.06919 1.21608 0.93286 0.98766 0.87064 1.22005 1.01476 0.95929 1.01613 1.21373 0.88468 0.73247 0.82757 1.90584 1.16126 1.50317 1.83244 1.17857 0.92835 0.96626 0.88926 0.92980 1.20760 0.93011 0.97522 1.45103 0.91607 1.25631 0.94954 1.00545 0.95849 1.70456 1.00320 1.34725 1.43686 0.85936 0.79335 0.80695 0.78539 1.18156 1.20681 1.21415 1.19993 0.96020 0.92670 0.95218 1.21054 1.00463 0.95628 0.98884 1.21183 0.99873 1.00561 0.93768 1.21217 1.01344 0.95633 0.97560 1.21369 0.99963 0.96112 0.99402 1.21305 0.97018 0.98951 0.93085 0.89076 0.90707 0.92370 0.93037 0.92937 0.88115 0.92785 0.88965 0.94700 0.91753 0.93559 0.88050 0.84485 0.84068 0.85741 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 10.28 71.98 0.74 -2.68 16 2 C 0.02 0.56 7.04 71.98 0.51 1.07 16 3 O -0.15 -5.86 10.22 -38.78 -0.40 -6.26 16 4 N -0.50 -21.23 3.01 -463.07 -1.39 -22.63 16 5 C 0.11 3.98 6.38 86.38 0.55 4.53 16 6 C -0.15 -4.66 10.05 71.98 0.72 -3.94 16 7 C 0.55 27.56 5.50 87.66 0.48 28.04 16 8 O -0.53 -29.72 13.46 -3.00 -0.04 -29.76 16 9 C 0.06 2.95 2.20 -13.03 -0.03 2.93 16 10 H 0.05 2.56 7.74 -2.38 -0.02 2.54 16 11 C -0.53 -26.79 6.00 25.60 0.15 -26.64 16 12 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 13 C 0.04 1.83 3.27 84.65 0.28 2.10 16 14 N -0.86 -48.43 9.55 21.45 0.20 -48.23 16 15 Si 0.93 41.11 29.54 68.60 2.03 43.14 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 C -0.04 -1.88 4.39 -19.87 -0.09 -1.97 16 20 C -0.14 -6.32 9.03 22.27 0.20 -6.12 16 21 C -0.14 -5.17 10.05 22.27 0.22 -4.95 16 22 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 23 C -0.15 -6.20 10.05 22.27 0.22 -5.98 16 24 C -0.09 -4.15 7.97 22.27 0.18 -3.97 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.05 2.13 6.42 -2.39 -0.02 2.11 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.05 2.11 7.83 -2.39 -0.02 2.09 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.03 1.27 7.53 -2.39 -0.02 1.25 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.10 4.35 8.04 -2.91 -0.02 4.33 16 37 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.11 5.86 5.21 -2.91 -0.02 5.85 16 Total: -1.00 -64.91 329.41 5.78 -59.13 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 1.01 Total: 27.06 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.37 Total: -22.46 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -1.19 Total: -70.85 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.44 Total: -36.01 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -64.91 5.78 -59.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471251936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.150 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds