Wall clock time and date at job start Mon Mar 30 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42906 * 109.47240 * 2 1 4 4 N 1.41599 * 114.00238 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99713 * 269.99836 * 4 3 2 6 6 C 1.53000 * 109.46823 * 254.99682 * 5 4 3 7 7 C 1.34780 * 120.00266 * 89.99463 * 4 3 2 8 8 O 1.21272 * 120.00104 * 179.97438 * 7 4 3 9 9 C 1.50701 * 119.99813 * 0.02562 * 7 4 3 10 10 H 1.09001 * 109.47562 * 300.00272 * 9 7 4 11 11 C 1.50703 * 109.46950 * 59.99829 * 9 7 4 12 12 H 1.07997 * 119.99893 * 235.35081 * 11 9 7 13 13 C 1.37879 * 120.00136 * 55.35173 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.98998 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.98653 * 13 11 9 16 16 H 1.48495 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46977 * 120.00228 * 15 13 11 18 18 H 1.48496 * 109.47065 * 239.99944 * 15 13 11 19 19 C 1.50696 * 109.47071 * 179.97438 * 9 7 4 20 20 C 1.38239 * 119.99882 * 47.19686 * 19 9 7 21 21 C 1.38234 * 120.00019 * 180.02562 * 20 19 9 22 22 C 1.38236 * 120.00227 * 359.95097 * 21 20 19 23 23 C 1.38237 * 119.99698 * 0.02562 * 22 21 20 24 24 C 1.38231 * 119.99915 * 0.06790 * 23 22 21 25 25 H 1.08994 * 109.47486 * 60.00084 * 1 2 3 26 26 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47233 * 300.00111 * 1 2 3 28 28 H 1.09005 * 109.47233 * 239.99889 * 2 1 3 29 29 H 1.09003 * 109.47644 * 119.99928 * 2 1 3 30 30 H 1.09001 * 109.47114 * 14.99897 * 5 4 3 31 31 H 1.08999 * 109.47035 * 134.99853 * 5 4 3 32 32 H 1.08999 * 109.47175 * 60.00257 * 6 5 4 33 33 H 1.08998 * 109.46777 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47452 * 300.00009 * 6 5 4 35 35 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.00098 * 359.97347 * 20 19 9 37 37 H 1.08002 * 119.99961 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00245 * 179.72114 * 22 21 20 39 39 H 1.08004 * 120.00042 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.99804 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4592 -0.0006 5 6 4.1486 1.5169 1.2679 6 6 4.6152 2.9515 1.5228 7 6 4.0892 1.5125 -1.1680 8 8 5.2981 1.6087 -1.1685 9 6 3.3375 1.4536 -2.4729 10 1 2.7826 0.5172 -2.5307 11 6 2.3770 2.6122 -2.5519 12 1 1.3265 2.4318 -2.7254 13 6 2.8395 3.9025 -2.4027 14 7 4.1242 4.1248 -2.2305 15 14 1.6413 5.3350 -2.4452 16 1 0.2629 4.8214 -2.6492 17 1 1.7082 6.0746 -1.1592 18 1 2.0002 6.2475 -3.5604 19 6 4.3132 1.5315 -3.6186 20 6 5.4467 0.7402 -3.6163 21 6 6.3420 0.8120 -4.6670 22 6 6.1034 1.6744 -5.7207 23 6 4.9697 2.4654 -5.7233 24 6 4.0754 2.3949 -4.6716 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4940 1.1981 2.0791 31 1 5.0144 0.8565 1.2188 32 1 3.7494 3.6119 1.5719 33 1 5.1592 2.9943 2.4663 34 1 5.2697 3.2703 0.7116 35 1 4.4497 5.0325 -2.1259 36 1 5.6332 0.0664 -2.7930 37 1 7.2278 0.1941 -4.6649 38 1 6.8052 1.7338 -6.5395 39 1 4.7835 3.1395 -6.5463 40 1 3.1899 3.0132 -4.6735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471251947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:12 Heat of formation + Delta-G solvation = -3.029901 kcal Electronic energy + Delta-G solvation = -22956.112644 eV Core-core repulsion = 19738.362916 eV Total energy + Delta-G solvation = -3217.749728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.11036 -37.71795 -36.38204 -33.77056 -33.24994 -30.91171 -30.58501 -29.65335 -28.63486 -26.94648 -24.00308 -22.78736 -22.32193 -21.23601 -20.20665 -19.15574 -17.17802 -16.33312 -15.77204 -15.27078 -14.87201 -14.63085 -14.40395 -13.97761 -13.66670 -13.56622 -13.25262 -12.64637 -12.41719 -12.31294 -12.15668 -12.01944 -11.77189 -11.58570 -11.44255 -11.31657 -11.02858 -10.90549 -10.68636 -10.47847 -10.40315 -10.01268 -9.72083 -9.48378 -9.29129 -8.61113 -8.30514 -7.95881 -7.67844 -7.37685 -6.02363 -4.12385 2.53462 2.63378 2.86387 3.27682 3.37397 3.39618 3.99568 4.41234 4.90480 5.10668 5.25849 5.33102 5.49168 5.52163 5.69348 5.81826 5.87257 5.88855 5.97542 6.01140 6.07654 6.16414 6.18125 6.32603 6.44554 6.52590 6.64050 6.69041 6.81169 6.90804 6.97476 7.15436 7.23565 7.48184 7.56918 7.67420 7.81860 7.86407 8.18764 8.33036 8.54489 8.86530 9.46938 9.53181 10.99532 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.008690 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.922773 B = 3221.468288 C = 3827.327174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.022 3.978 3 O -0.119 6.119 4 N -0.481 5.481 5 C 0.123 3.877 6 C -0.162 4.162 7 C 0.562 3.438 8 O -0.528 6.528 9 C 0.063 3.937 10 H 0.053 0.947 11 C -0.510 4.510 12 H 0.065 0.935 13 C 0.074 3.926 14 N -0.850 5.850 15 Si 0.886 3.114 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.016 4.016 20 C -0.104 4.104 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.062 4.062 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.262 0.738 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -6.791 2.924 7.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.057 4.057 3 O -0.124 6.124 4 N -0.261 5.261 5 C 0.002 3.998 6 C -0.220 4.220 7 C 0.355 3.645 8 O -0.404 6.404 9 C 0.042 3.958 10 H 0.070 0.930 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.133 4.133 14 N -0.484 5.484 15 Si 0.714 3.286 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.017 4.017 20 C -0.122 4.122 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.165 4.165 24 C -0.080 4.080 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.056 -6.406 2.947 7.345 hybrid contribution -0.548 0.900 0.273 1.089 sum -2.604 -5.505 3.220 6.889 Atomic orbital electron populations 1.21646 0.93230 1.01874 1.03370 1.22919 0.95429 0.87318 1.00034 1.90796 1.02621 1.22493 1.96509 1.50056 0.94167 1.76038 1.05806 1.21389 0.95149 0.97897 0.85362 1.22060 1.01900 0.96691 1.01381 1.21427 0.86777 0.71793 0.84514 1.90577 1.14381 1.49802 1.85599 1.17835 0.92970 0.98172 0.86852 0.92955 1.20557 0.93384 0.89067 1.51814 0.91667 1.24973 0.94903 0.98836 0.94564 1.70057 1.11910 1.20918 1.45562 0.86613 0.81670 0.82749 0.77576 1.19590 1.21100 1.21106 1.19860 0.94237 0.92977 0.94626 1.20959 0.94729 0.99945 0.96554 1.20801 0.99293 1.00654 0.95441 1.20770 0.97972 0.98893 0.98622 1.20997 0.96017 1.00308 0.99196 1.21156 0.98985 0.95960 0.91885 0.91137 0.91394 0.92192 0.92927 0.93983 0.91292 0.91299 0.92694 0.93023 0.90631 0.92784 0.87694 0.88128 0.88219 0.88025 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 10.28 37.15 0.38 -1.43 16 2 C 0.02 0.34 7.09 37.15 0.26 0.60 16 3 O -0.12 -2.39 9.51 -11.47 -0.11 -2.50 16 4 N -0.48 -10.25 3.00 -60.29 -0.18 -10.43 16 5 C 0.12 2.23 6.38 -4.04 -0.03 2.20 16 6 C -0.16 -3.02 10.04 37.16 0.37 -2.65 16 7 C 0.56 13.54 5.21 -10.98 -0.06 13.48 16 8 O -0.53 -13.86 13.03 5.56 0.07 -13.79 16 9 C 0.06 1.51 2.38 -94.08 -0.22 1.29 16 10 H 0.05 1.18 7.13 -51.93 -0.37 0.81 16 11 C -0.51 -12.84 6.15 -34.44 -0.21 -13.05 16 12 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.07 1.91 3.99 -17.82 -0.07 1.84 16 14 N -0.85 -23.42 10.88 55.43 0.60 -22.82 16 15 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.02 -0.38 4.52 -104.63 -0.47 -0.86 16 20 C -0.10 -2.36 8.21 -39.58 -0.33 -2.68 16 21 C -0.14 -2.95 10.05 -39.58 -0.40 -3.35 16 22 C -0.14 -2.87 10.05 -39.58 -0.40 -3.26 16 23 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 24 C -0.06 -1.46 8.19 -39.59 -0.32 -1.78 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.84 7.13 -51.93 -0.37 0.47 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.70 7.34 -51.93 -0.38 1.31 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.10 2.35 7.01 -52.48 -0.37 1.98 16 37 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 40 H 0.13 3.14 6.02 -52.49 -0.32 2.82 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -29.82 329.68 -7.54 -37.36 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.99 Total: 4.70 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -1.89 Total: -13.14 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.42 Total: -33.26 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.04 Total: -16.29 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.82 -7.54 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471251947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.335 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds