Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00341 * 2 1 4 4 H 1.08999 * 109.46801 * 29.99797 * 3 2 1 5 5 C 1.53004 * 109.47108 * 270.00176 * 3 2 1 6 6 N 1.46895 * 109.47211 * 64.99546 * 5 3 2 7 7 C 1.47961 * 111.00270 * 170.00151 * 6 5 3 8 8 C 1.53934 * 86.18427 * 222.41862 * 7 6 5 9 9 O 1.42895 * 113.73076 * 269.25870 * 8 7 6 10 10 C 1.50696 * 113.73266 * 138.07361 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47958 * 110.99863 * 70.64272 * 6 5 3 19 19 C 1.50694 * 109.47467 * 149.99613 * 3 2 1 20 20 C 1.38239 * 119.99967 * 39.73088 * 19 3 2 21 21 C 1.38233 * 120.00198 * 179.78704 * 20 19 3 22 22 C 1.38237 * 119.99606 * 0.43878 * 21 20 19 23 23 C 1.38227 * 120.00452 * 359.81524 * 22 21 20 24 24 C 1.38236 * 120.00259 * 219.99964 * 19 3 2 25 25 H 1.08999 * 109.46771 * 60.00326 * 1 2 3 26 26 H 1.09006 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46813 * 300.00189 * 1 2 3 28 28 H 1.09005 * 109.46718 * 304.99663 * 5 3 2 29 29 H 1.08999 * 109.46778 * 185.00116 * 5 3 2 30 30 H 1.08996 * 113.76309 * 108.09300 * 7 6 5 31 31 H 1.09008 * 113.85816 * 336.74814 * 7 6 5 32 32 H 0.96697 * 114.00066 * 178.10080 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 34 34 H 1.08993 * 113.76569 * 23.26601 * 18 6 5 35 35 H 1.09005 * 113.75789 * 251.89882 * 18 6 5 36 36 H 1.07999 * 119.99714 * 359.97438 * 20 19 3 37 37 H 1.07997 * 120.00124 * 180.27538 * 21 20 19 38 38 H 1.08004 * 119.99797 * 179.83564 * 22 21 20 39 39 H 1.07997 * 120.00585 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.99886 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 7 0.9130 1.9268 -2.0993 7 6 1.0555 2.5998 -3.4092 8 6 -0.1967 3.4043 -3.0165 9 8 -1.4225 2.8012 -3.4356 10 6 -0.1121 4.8675 -3.3666 11 1 0.7723 5.2572 -3.8487 12 6 -1.1643 5.7087 -3.0725 13 7 -1.0907 6.9857 -3.3785 14 14 -2.6942 5.0345 -2.2393 15 1 -3.6641 4.5882 -3.2715 16 1 -2.3225 3.8830 -1.3785 17 1 -3.3125 6.0966 -1.4055 18 6 0.1822 3.0935 -1.5572 19 6 3.3386 1.2638 0.7104 20 6 4.1871 0.1880 0.5271 21 6 5.4075 0.1520 1.1754 22 6 5.7755 1.1874 2.0140 23 6 4.9248 2.2607 2.2015 24 6 3.7062 2.2988 1.5498 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.8100 1.0318 -1.9815 29 1 2.7415 2.7272 -1.4438 30 1 0.9030 1.9382 -4.2619 31 1 1.9571 3.2061 -3.4976 32 1 -2.2130 3.2883 -3.1657 33 1 -1.8310 7.5773 -3.1718 34 1 0.8285 3.8439 -1.1020 35 1 -0.6683 2.8262 -0.9300 36 1 3.8979 -0.6228 -0.1249 37 1 6.0723 -0.6864 1.0287 38 1 6.7278 1.1580 2.5226 39 1 5.2124 3.0699 2.8564 40 1 3.0416 3.1374 1.6961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -13.125345 kcal Electronic energy + Delta-G solvation = -21975.048753 eV Core-core repulsion = 18756.861254 eV Total energy + Delta-G solvation = -3218.187499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97955 -39.03453 -37.31211 -34.83683 -32.48166 -32.38744 -30.91892 -29.46694 -27.11287 -26.11947 -25.38250 -24.16925 -22.55218 -21.78578 -20.50926 -19.13936 -17.39153 -17.07268 -16.53394 -16.12276 -15.74198 -15.29276 -14.99177 -14.52084 -14.27691 -14.17400 -13.44014 -13.38030 -13.11852 -12.90628 -12.79332 -12.56468 -12.46548 -12.06706 -11.62885 -11.46306 -11.20146 -11.12461 -10.88639 -10.80436 -10.51344 -10.40877 -10.02131 -9.39351 -9.31619 -8.93893 -8.93465 -8.74393 -8.59998 -8.01898 -6.36124 -4.40273 1.28550 1.38761 3.03745 3.08507 3.18371 3.70418 3.97922 4.09371 4.44873 4.77672 4.87853 4.91254 5.02012 5.12753 5.20330 5.27830 5.39713 5.51795 5.56073 5.62977 5.70134 5.83740 5.85027 5.89466 5.92057 6.03356 6.07598 6.19929 6.25107 6.42760 6.43981 6.47442 6.55966 6.57918 6.85720 6.89529 6.96968 7.30888 7.42424 7.69863 8.11355 8.64431 8.66642 9.23245 10.76564 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.004786 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.236047 B = 5848.568914 C = 6231.311602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.377 6.377 3 C 0.137 3.863 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.474 5.474 7 C 0.025 3.975 8 C 0.203 3.797 9 O -0.551 6.551 10 C -0.537 4.537 11 H 0.085 0.915 12 C 0.078 3.922 13 N -0.882 5.882 14 Si 0.861 3.139 15 H -0.268 1.268 16 H -0.255 1.255 17 H -0.286 1.286 18 C -0.035 4.035 19 C -0.080 4.080 20 C -0.091 4.091 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.347 0.653 33 H 0.269 0.731 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.437 -10.682 10.286 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.295 6.295 3 C 0.078 3.922 4 H 0.085 0.915 5 C -0.125 4.125 6 N -0.197 5.197 7 C -0.103 4.103 8 C 0.162 3.838 9 O -0.361 6.361 10 C -0.575 4.575 11 H 0.103 0.897 12 C -0.126 4.126 13 N -0.518 5.518 14 Si 0.690 3.310 15 H -0.194 1.194 16 H -0.180 1.180 17 H -0.213 1.213 18 C -0.165 4.165 19 C -0.081 4.081 20 C -0.109 4.109 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.128 4.128 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.199 0.801 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.583 -11.754 10.077 17.702 hybrid contribution -0.898 1.288 0.757 1.743 sum 7.685 -10.466 10.834 16.911 Atomic orbital electron populations 1.22940 0.80488 1.02131 1.01418 1.87786 1.20314 1.26337 1.95106 1.20812 0.91144 0.85812 0.94386 0.91475 1.23161 0.94057 1.00540 0.94759 1.68545 1.13204 1.34097 1.03841 1.23996 0.97846 0.95650 0.92845 1.20436 0.82473 0.91924 0.88978 1.86470 1.15141 1.53892 1.80602 1.21403 1.04919 0.90154 1.41006 0.89667 1.25011 0.98261 0.94838 0.94539 1.69877 1.32414 1.03700 1.45858 0.87299 0.84015 0.79165 0.80562 1.19407 1.18012 1.21316 1.25077 0.98566 0.91441 1.01374 1.19799 0.95611 0.95270 0.97430 1.21030 0.93171 0.97776 0.98932 1.21163 0.96728 0.98816 0.97671 1.21143 0.99546 0.94485 0.98921 1.21079 0.94336 0.98522 1.00105 1.21044 0.97113 0.98293 0.96377 0.90587 0.90541 0.95269 0.90350 0.93327 0.90056 0.90811 0.80129 0.92098 0.90969 0.91040 0.85502 0.86157 0.86301 0.86046 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.69 101.05 1.08 1.47 16 2 O -0.38 -6.01 9.66 -35.23 -0.34 -6.35 16 3 C 0.14 2.09 2.48 -27.88 -0.07 2.02 16 4 H 0.07 1.05 6.92 -51.93 -0.36 0.69 16 5 C 0.00 0.07 4.46 -3.82 -0.02 0.05 16 6 N -0.47 -9.05 4.36 -238.22 -1.04 -10.09 16 7 C 0.02 0.51 7.36 -2.77 -0.02 0.49 16 8 C 0.20 4.76 1.05 -90.84 -0.10 4.67 16 9 O -0.55 -13.34 13.32 -35.23 -0.47 -13.81 16 10 C -0.54 -14.48 9.20 -34.44 -0.32 -14.80 16 11 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 12 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.88 -25.53 13.96 55.43 0.77 -24.76 16 14 Si 0.86 19.73 24.34 -169.99 -4.14 15.59 16 15 H -0.27 -5.97 7.06 56.52 0.40 -5.57 16 16 H -0.25 -5.51 5.28 56.52 0.30 -5.21 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 C -0.04 -0.73 5.31 -2.76 -0.01 -0.75 16 19 C -0.08 -1.11 4.97 -104.63 -0.52 -1.63 16 20 C -0.09 -1.17 9.36 -39.58 -0.37 -1.54 16 21 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 22 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 24 C -0.11 -1.39 9.67 -39.58 -0.38 -1.77 16 25 H 0.08 1.29 5.82 -51.93 -0.30 0.99 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 30 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 31 H 0.07 1.46 7.75 -51.92 -0.40 1.06 16 32 H 0.35 8.09 3.31 45.56 0.15 8.24 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.07 1.48 7.73 -51.93 -0.40 1.08 16 35 H 0.07 1.47 6.82 -51.93 -0.35 1.12 16 36 H 0.13 1.61 7.77 -52.49 -0.41 1.20 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -29.45 320.15 -7.92 -37.37 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.52 Total: 12.18 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.02 Total: -14.96 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.27 Total: -34.85 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.81 Total: -20.16 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.14 Total: 15.59 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.45 -7.92 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.244 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds