Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00341 * 2 1 4 4 H 1.08999 * 109.46801 * 29.99797 * 3 2 1 5 5 C 1.53004 * 109.47108 * 270.00176 * 3 2 1 6 6 N 1.46895 * 109.47211 * 64.99546 * 5 3 2 7 7 C 1.47961 * 111.00270 * 170.00151 * 6 5 3 8 8 C 1.53934 * 86.18427 * 222.41862 * 7 6 5 9 9 O 1.42895 * 113.73076 * 269.25870 * 8 7 6 10 10 C 1.50696 * 113.73266 * 138.07361 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47958 * 110.99863 * 70.64272 * 6 5 3 19 19 C 1.50694 * 109.47467 * 149.99613 * 3 2 1 20 20 C 1.38239 * 119.99967 * 39.73088 * 19 3 2 21 21 C 1.38233 * 120.00198 * 179.78704 * 20 19 3 22 22 C 1.38237 * 119.99606 * 0.43878 * 21 20 19 23 23 C 1.38227 * 120.00452 * 359.81524 * 22 21 20 24 24 C 1.38236 * 120.00259 * 219.99964 * 19 3 2 25 25 H 1.08999 * 109.46771 * 60.00326 * 1 2 3 26 26 H 1.09006 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46813 * 300.00189 * 1 2 3 28 28 H 1.09005 * 109.46718 * 304.99663 * 5 3 2 29 29 H 1.08999 * 109.46778 * 185.00116 * 5 3 2 30 30 H 1.08996 * 113.76309 * 108.09300 * 7 6 5 31 31 H 1.09008 * 113.85816 * 336.74814 * 7 6 5 32 32 H 0.96697 * 114.00066 * 178.10080 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 34 34 H 1.08993 * 113.76569 * 23.26601 * 18 6 5 35 35 H 1.09005 * 113.75789 * 251.89882 * 18 6 5 36 36 H 1.07999 * 119.99714 * 359.97438 * 20 19 3 37 37 H 1.07997 * 120.00124 * 180.27538 * 21 20 19 38 38 H 1.08004 * 119.99797 * 179.83564 * 22 21 20 39 39 H 1.07997 * 120.00585 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.99886 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 7 0.9130 1.9268 -2.0993 7 6 1.0555 2.5998 -3.4092 8 6 -0.1967 3.4043 -3.0165 9 8 -1.4225 2.8012 -3.4356 10 6 -0.1121 4.8675 -3.3666 11 1 0.7723 5.2572 -3.8487 12 6 -1.1643 5.7087 -3.0725 13 7 -1.0907 6.9857 -3.3785 14 14 -2.6942 5.0345 -2.2393 15 1 -3.6641 4.5882 -3.2715 16 1 -2.3225 3.8830 -1.3785 17 1 -3.3125 6.0966 -1.4055 18 6 0.1822 3.0935 -1.5572 19 6 3.3386 1.2638 0.7104 20 6 4.1871 0.1880 0.5271 21 6 5.4075 0.1520 1.1754 22 6 5.7755 1.1874 2.0140 23 6 4.9248 2.2607 2.2015 24 6 3.7062 2.2988 1.5498 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.8100 1.0318 -1.9815 29 1 2.7415 2.7272 -1.4438 30 1 0.9030 1.9382 -4.2619 31 1 1.9571 3.2061 -3.4976 32 1 -2.2130 3.2883 -3.1657 33 1 -1.8310 7.5773 -3.1718 34 1 0.8285 3.8439 -1.1020 35 1 -0.6683 2.8262 -0.9300 36 1 3.8979 -0.6228 -0.1249 37 1 6.0723 -0.6864 1.0287 38 1 6.7278 1.1580 2.5226 39 1 5.2124 3.0699 2.8564 40 1 3.0416 3.1374 1.6961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -34.154748 kcal Electronic energy + Delta-G solvation = -21975.960656 eV Core-core repulsion = 18756.861254 eV Total energy + Delta-G solvation = -3219.099403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41334 -40.22305 -38.51153 -36.59831 -34.55263 -33.51389 -31.78805 -30.88213 -28.63666 -27.57849 -27.02927 -25.56359 -23.47560 -23.10881 -21.67016 -20.91478 -19.37865 -18.19456 -18.05932 -17.56772 -17.05920 -16.60513 -16.28321 -15.93488 -15.39449 -15.31450 -15.13273 -14.89422 -14.53055 -14.29060 -14.20146 -13.83210 -13.73402 -13.60171 -13.04003 -12.92051 -12.70691 -12.43342 -12.34311 -12.10706 -11.99208 -11.89689 -11.68991 -11.15902 -10.92803 -10.61262 -10.47433 -9.81749 -9.69913 -9.61866 -8.45821 -6.56147 0.38263 0.50758 1.20812 1.25672 1.35840 2.14982 2.72994 2.77074 2.85970 2.98080 3.48729 3.85664 3.88365 3.91368 4.04382 4.11964 4.17115 4.24477 4.31075 4.39697 4.50486 4.55503 4.64614 4.67842 4.71359 4.78410 4.83755 4.86285 4.99091 5.05697 5.16253 5.17109 5.30300 5.34311 5.56319 5.61733 5.64146 6.00525 6.09273 6.12187 6.27859 6.48856 6.74800 7.11811 8.70228 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.004786 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.236047 B = 5848.568914 C = 6231.311602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.143 3.857 4 H 0.061 0.939 5 C 0.008 3.992 6 N -0.466 5.466 7 C 0.028 3.972 8 C 0.187 3.813 9 O -0.556 6.556 10 C -0.548 4.548 11 H 0.047 0.953 12 C 0.025 3.975 13 N -0.929 5.929 14 Si 0.921 3.079 15 H -0.254 1.254 16 H -0.234 1.234 17 H -0.283 1.283 18 C -0.021 4.021 19 C -0.101 4.101 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.125 4.125 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.350 0.650 33 H 0.272 0.728 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.901 -12.361 12.155 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.304 6.304 3 C 0.085 3.915 4 H 0.079 0.921 5 C -0.121 4.121 6 N -0.189 5.189 7 C -0.101 4.101 8 C 0.147 3.853 9 O -0.367 6.367 10 C -0.586 4.586 11 H 0.065 0.935 12 C -0.176 4.176 13 N -0.567 5.567 14 Si 0.746 3.254 15 H -0.180 1.180 16 H -0.158 1.158 17 H -0.210 1.210 18 C -0.150 4.150 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.202 0.798 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.060 -13.453 11.944 20.143 hybrid contribution -0.915 1.825 0.140 2.047 sum 8.145 -11.628 12.083 18.643 Atomic orbital electron populations 1.22985 0.79992 1.03302 1.00774 1.87786 1.20908 1.26674 1.95035 1.20727 0.92065 0.85426 0.93316 0.92051 1.23180 0.92571 1.00627 0.95764 1.68535 1.14614 1.32761 1.02954 1.23961 0.96623 0.95476 0.94010 1.20572 0.83308 0.90192 0.91275 1.86464 1.15406 1.53749 1.81033 1.21585 1.03868 0.92407 1.40754 0.93460 1.25852 1.01717 0.94880 0.95118 1.70018 1.33805 1.05282 1.47580 0.86292 0.79789 0.79235 0.80083 1.17999 1.15752 1.20957 1.24849 0.98897 0.91923 0.99374 1.19760 0.95238 0.96473 0.98656 1.21112 0.94069 0.97528 0.99610 1.21476 0.96227 0.99772 0.97003 1.21542 1.00449 0.93646 0.98185 1.21407 0.93646 0.99425 0.99831 1.21203 0.98145 0.98195 0.96781 0.92693 0.88591 0.94337 0.89838 0.93560 0.89564 0.90596 0.79799 0.91853 0.91201 0.90351 0.85950 0.83767 0.83335 0.83795 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.69 113.37 1.21 1.93 16 2 O -0.39 -11.78 9.66 -148.98 -1.44 -13.22 16 3 C 0.14 4.24 2.48 29.85 0.07 4.31 16 4 H 0.06 1.87 6.92 -2.39 -0.02 1.85 16 5 C 0.01 0.24 4.46 86.31 0.39 0.63 16 6 N -0.47 -17.37 4.36 -910.80 -3.97 -21.35 16 7 C 0.03 1.14 7.36 86.41 0.64 1.77 16 8 C 0.19 8.74 1.05 -10.89 -0.01 8.73 16 9 O -0.56 -26.23 13.32 -148.98 -1.98 -28.22 16 10 C -0.55 -30.28 9.20 25.60 0.24 -30.04 16 11 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 12 C 0.02 1.36 5.47 84.66 0.46 1.82 16 13 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 14 Si 0.92 40.24 24.34 68.60 1.67 41.91 16 15 H -0.25 -10.56 7.06 99.48 0.70 -9.86 16 16 H -0.23 -9.31 5.28 99.48 0.52 -8.79 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 C -0.02 -0.86 5.31 86.41 0.46 -0.40 16 19 C -0.10 -2.68 4.97 -19.87 -0.10 -2.78 16 20 C -0.11 -2.55 9.36 22.27 0.21 -2.34 16 21 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 22 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 23 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 24 C -0.13 -2.99 9.67 22.27 0.22 -2.78 16 25 H 0.05 1.78 5.82 -2.39 -0.01 1.76 16 26 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.04 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 30 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.08 3.04 7.75 -2.38 -0.02 3.02 16 32 H 0.35 15.63 3.31 -74.06 -0.25 15.39 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.07 2.85 7.73 -2.39 -0.02 2.83 16 35 H 0.08 3.07 6.82 -2.38 -0.02 3.06 16 36 H 0.12 2.99 7.77 -2.91 -0.02 2.97 16 37 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.12 2.80 8.04 -2.91 -0.02 2.78 16 Total: -1.00 -63.74 320.15 -0.38 -64.12 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.60 Total: 37.08 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.45 Total: -25.49 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -3.67 Total: -76.17 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -3.42 Total: -41.44 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.67 Total: 41.91 kcal Total: -63.74 -0.38 -64.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.961 kcal (2) G-P(sol) polarization free energy of solvation -63.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds