Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00244 * 2 1 4 4 H 1.09004 * 109.47111 * 29.99629 * 3 2 1 5 5 C 1.53003 * 109.47552 * 149.99486 * 3 2 1 6 6 N 1.46900 * 109.47110 * 300.00631 * 5 3 2 7 7 C 1.47960 * 111.00148 * 169.99896 * 6 5 3 8 8 C 1.53936 * 86.18087 * 222.41298 * 7 6 5 9 9 O 1.42891 * 113.73211 * 269.25467 * 8 7 6 10 10 C 1.50696 * 113.73108 * 138.07348 * 8 7 6 11 11 H 1.07999 * 120.00319 * 1.90416 * 10 8 7 12 12 C 1.37885 * 119.99717 * 181.89799 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.48184 * 111.07654 * 70.56025 * 6 5 3 19 19 C 1.50698 * 109.46985 * 269.99859 * 3 2 1 20 20 C 1.38230 * 120.00154 * 324.72481 * 19 3 2 21 21 C 1.38229 * 120.00114 * 179.81158 * 20 19 3 22 22 C 1.38237 * 120.00118 * 0.39408 * 21 20 19 23 23 C 1.38238 * 119.99822 * 359.86068 * 22 21 20 24 24 C 1.38233 * 119.99906 * 359.95213 * 23 22 21 25 25 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47333 * 300.00395 * 1 2 3 27 27 H 1.09003 * 109.47031 * 60.00236 * 1 2 3 28 28 H 1.08995 * 109.47135 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46796 * 59.99950 * 5 3 2 30 30 H 1.08999 * 113.76188 * 108.09043 * 7 6 5 31 31 H 1.09010 * 113.75297 * 336.73243 * 7 6 5 32 32 H 0.96701 * 114.00462 * 178.10004 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 34 34 H 1.09004 * 113.75438 * 23.24158 * 18 6 5 35 35 H 1.08998 * 113.83040 * 251.81313 * 18 6 5 36 36 H 1.08000 * 119.99764 * 359.97438 * 20 19 3 37 37 H 1.08005 * 120.00337 * 180.23230 * 21 20 19 38 38 H 1.07996 * 120.00267 * 179.83510 * 22 21 20 39 39 H 1.08000 * 120.00122 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.99795 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2633 0.7214 6 7 3.1597 0.8159 2.1063 7 6 4.4547 0.5335 2.7638 8 6 3.7697 -0.7163 3.3455 9 8 3.1498 -0.4947 4.6137 10 6 4.6363 -1.9490 3.3227 11 1 5.6485 -1.8906 2.9506 12 6 4.1369 -3.1513 3.7769 13 7 4.8934 -4.2269 3.7575 14 14 2.3860 -3.2522 4.4198 15 1 2.3784 -2.9814 5.8799 16 1 1.5447 -2.2448 3.7251 17 1 1.8429 -4.6108 4.1655 18 6 2.7978 -0.6202 2.1556 19 6 2.2146 1.7643 -1.4208 20 6 2.5651 0.8518 -2.3982 21 6 2.7487 1.2720 -3.7022 22 6 2.5899 2.6062 -4.0273 23 6 2.2445 3.5196 -3.0489 24 6 2.0571 3.0987 -1.7456 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.8020 2.2591 0.7217 29 1 4.0242 0.5693 0.2076 30 1 4.7354 1.2707 3.5160 31 1 5.2613 0.3076 2.0662 32 1 2.6934 -1.2695 4.9693 33 1 4.5422 -5.0726 4.0774 34 1 3.1188 -1.1842 1.2797 35 1 1.7570 -0.8032 2.4227 36 1 2.6929 -0.1899 -2.1435 37 1 3.0189 0.5584 -4.4666 38 1 2.7359 2.9350 -5.0456 39 1 2.1208 4.5620 -3.3027 40 1 1.7869 3.8123 -0.9813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = -14.490298 kcal Electronic energy + Delta-G solvation = -22040.297572 eV Core-core repulsion = 18822.050884 eV Total energy + Delta-G solvation = -3218.246688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93408 -38.95957 -37.32952 -34.74344 -32.42333 -32.31755 -30.93244 -29.54052 -27.08900 -26.01525 -25.22855 -24.21777 -22.58793 -21.73557 -20.54503 -18.97367 -17.33262 -17.10361 -16.54020 -16.06776 -15.73532 -15.01252 -14.90983 -14.57189 -14.40759 -14.10754 -13.43346 -13.35687 -13.25394 -13.01162 -12.77209 -12.58514 -12.27608 -11.87240 -11.53161 -11.45743 -11.27528 -11.11389 -10.87579 -10.57239 -10.42746 -10.42076 -9.87859 -9.52160 -9.21659 -8.97366 -8.84074 -8.75591 -8.44792 -7.90960 -6.26022 -4.29178 1.25905 1.35451 3.12236 3.21856 3.26734 3.69886 3.90895 4.20524 4.51280 4.82880 4.86288 4.91326 4.98198 5.09949 5.24380 5.29583 5.43566 5.49642 5.50900 5.54217 5.61583 5.75866 5.82066 5.91419 5.95735 6.00698 6.03355 6.16566 6.38594 6.40892 6.45611 6.53943 6.56750 6.83637 6.93918 7.01427 7.09143 7.36409 7.42645 7.84219 8.22532 8.76200 8.78129 9.34128 10.86776 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.004695 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.603098 B = 5961.775174 C = 6040.644972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.136 3.864 4 H 0.073 0.927 5 C 0.029 3.971 6 N -0.482 5.482 7 C 0.024 3.976 8 C 0.193 3.807 9 O -0.554 6.554 10 C -0.534 4.534 11 H 0.084 0.916 12 C 0.078 3.922 13 N -0.885 5.885 14 Si 0.858 3.142 15 H -0.270 1.270 16 H -0.250 1.250 17 H -0.287 1.287 18 C -0.001 4.001 19 C -0.107 4.107 20 C -0.093 4.093 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.112 4.112 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.347 0.653 33 H 0.268 0.732 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 11.921 -12.717 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.077 3.923 4 H 0.091 0.909 5 C -0.100 4.100 6 N -0.205 5.205 7 C -0.104 4.104 8 C 0.152 3.848 9 O -0.364 6.364 10 C -0.572 4.572 11 H 0.102 0.898 12 C -0.126 4.126 13 N -0.522 5.522 14 Si 0.687 3.313 15 H -0.197 1.197 16 H -0.175 1.175 17 H -0.214 1.214 18 C -0.130 4.130 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.131 4.131 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.198 0.802 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.935 12.640 -12.504 19.470 hybrid contribution -0.742 -1.064 -0.193 1.312 sum -8.677 11.576 -12.698 19.249 Atomic orbital electron populations 1.22736 0.81605 1.02529 0.99520 1.88021 1.19245 1.26555 1.94555 1.20954 0.95796 0.85428 0.90102 0.90878 1.22687 0.94291 1.01286 0.91785 1.68551 1.20191 1.20197 1.11527 1.23974 0.91556 0.97516 0.97369 1.20614 0.89874 0.93595 0.80718 1.86438 1.73426 1.39470 1.37033 1.21406 1.01104 0.91245 1.43443 0.89847 1.24989 0.97401 0.95650 0.94566 1.69885 1.36410 1.00155 1.45780 0.87324 0.85883 0.78142 0.79949 1.19669 1.17488 1.21387 1.24869 1.00593 0.87157 1.00407 1.20516 0.99941 0.93822 0.96493 1.21086 0.97355 1.00256 0.92357 1.21187 1.00520 0.95947 0.96547 1.21145 1.00237 0.93581 0.99203 1.21082 1.00627 0.99437 0.93160 1.21032 1.00282 0.95178 0.96561 0.89819 0.93957 0.94645 0.90241 0.93397 0.90282 0.90968 0.80158 0.92242 0.90539 0.91238 0.85340 0.86143 0.86365 0.86235 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.81 101.05 1.09 1.52 16 2 O -0.37 -5.87 6.96 -35.23 -0.25 -6.12 16 3 C 0.14 2.01 2.58 -27.88 -0.07 1.93 16 4 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 5 C 0.03 0.47 4.68 -3.82 -0.02 0.46 16 6 N -0.48 -9.64 6.26 -238.03 -1.49 -11.13 16 7 C 0.02 0.52 7.37 -2.76 -0.02 0.50 16 8 C 0.19 4.73 1.05 -90.84 -0.10 4.64 16 9 O -0.55 -13.96 13.35 -35.23 -0.47 -14.43 16 10 C -0.53 -14.93 9.19 -34.44 -0.32 -15.24 16 11 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 14 Si 0.86 20.42 24.30 -169.99 -4.13 16.29 16 15 H -0.27 -6.22 7.05 56.52 0.40 -5.82 16 16 H -0.25 -5.69 5.15 56.52 0.29 -5.40 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.00 -0.03 4.45 -2.63 -0.01 -0.04 16 19 C -0.11 -1.41 4.96 -104.63 -0.52 -1.92 16 20 C -0.09 -1.21 9.35 -39.59 -0.37 -1.58 16 21 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 24 C -0.11 -1.29 9.68 -39.58 -0.38 -1.67 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.84 7.70 -51.93 -0.40 0.44 16 30 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 31 H 0.07 1.48 7.74 -51.92 -0.40 1.08 16 32 H 0.35 8.42 3.57 45.56 0.16 8.58 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 1.75 7.32 -51.93 -0.38 1.37 16 35 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 36 H 0.13 1.76 7.64 -52.49 -0.40 1.36 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -30.77 321.56 -8.37 -39.13 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.64 Total: 11.39 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.00 Total: -14.42 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.72 Total: -36.69 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.72 Total: -20.55 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.13 Total: 16.29 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.77 -8.37 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.642 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds