Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00244 * 2 1 4 4 H 1.09004 * 109.47111 * 29.99629 * 3 2 1 5 5 C 1.53003 * 109.47552 * 149.99486 * 3 2 1 6 6 N 1.46900 * 109.47110 * 300.00631 * 5 3 2 7 7 C 1.47960 * 111.00148 * 169.99896 * 6 5 3 8 8 C 1.53936 * 86.18087 * 222.41298 * 7 6 5 9 9 O 1.42891 * 113.73211 * 269.25467 * 8 7 6 10 10 C 1.50696 * 113.73108 * 138.07348 * 8 7 6 11 11 H 1.07999 * 120.00319 * 1.90416 * 10 8 7 12 12 C 1.37885 * 119.99717 * 181.89799 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.48184 * 111.07654 * 70.56025 * 6 5 3 19 19 C 1.50698 * 109.46985 * 269.99859 * 3 2 1 20 20 C 1.38230 * 120.00154 * 324.72481 * 19 3 2 21 21 C 1.38229 * 120.00114 * 179.81158 * 20 19 3 22 22 C 1.38237 * 120.00118 * 0.39408 * 21 20 19 23 23 C 1.38238 * 119.99822 * 359.86068 * 22 21 20 24 24 C 1.38233 * 119.99906 * 359.95213 * 23 22 21 25 25 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47333 * 300.00395 * 1 2 3 27 27 H 1.09003 * 109.47031 * 60.00236 * 1 2 3 28 28 H 1.08995 * 109.47135 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.46796 * 59.99950 * 5 3 2 30 30 H 1.08999 * 113.76188 * 108.09043 * 7 6 5 31 31 H 1.09010 * 113.75297 * 336.73243 * 7 6 5 32 32 H 0.96701 * 114.00462 * 178.10004 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 34 34 H 1.09004 * 113.75438 * 23.24158 * 18 6 5 35 35 H 1.08998 * 113.83040 * 251.81313 * 18 6 5 36 36 H 1.08000 * 119.99764 * 359.97438 * 20 19 3 37 37 H 1.08005 * 120.00337 * 180.23230 * 21 20 19 38 38 H 1.07996 * 120.00267 * 179.83510 * 22 21 20 39 39 H 1.08000 * 120.00122 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.99795 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2633 0.7214 6 7 3.1597 0.8159 2.1063 7 6 4.4547 0.5335 2.7638 8 6 3.7697 -0.7163 3.3455 9 8 3.1498 -0.4947 4.6137 10 6 4.6363 -1.9490 3.3227 11 1 5.6485 -1.8906 2.9506 12 6 4.1369 -3.1513 3.7769 13 7 4.8934 -4.2269 3.7575 14 14 2.3860 -3.2522 4.4198 15 1 2.3784 -2.9814 5.8799 16 1 1.5447 -2.2448 3.7251 17 1 1.8429 -4.6108 4.1655 18 6 2.7978 -0.6202 2.1556 19 6 2.2146 1.7643 -1.4208 20 6 2.5651 0.8518 -2.3982 21 6 2.7487 1.2720 -3.7022 22 6 2.5899 2.6062 -4.0273 23 6 2.2445 3.5196 -3.0489 24 6 2.0571 3.0987 -1.7456 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.8020 2.2591 0.7217 29 1 4.0242 0.5693 0.2076 30 1 4.7354 1.2707 3.5160 31 1 5.2613 0.3076 2.0662 32 1 2.6934 -1.2695 4.9693 33 1 4.5422 -5.0726 4.0774 34 1 3.1188 -1.1842 1.2797 35 1 1.7570 -0.8032 2.4227 36 1 2.6929 -0.1899 -2.1435 37 1 3.0189 0.5584 -4.4666 38 1 2.7359 2.9350 -5.0456 39 1 2.1208 4.5620 -3.3027 40 1 1.7869 3.8123 -0.9813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = -37.845262 kcal Electronic energy + Delta-G solvation = -22041.310320 eV Core-core repulsion = 18822.050884 eV Total energy + Delta-G solvation = -3219.259435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30274 -40.25424 -38.45983 -36.56060 -34.52520 -33.49912 -31.76924 -30.90280 -28.67951 -27.34289 -26.98534 -25.64388 -23.44929 -23.11001 -21.66551 -20.83814 -19.34590 -18.18882 -17.98944 -17.64347 -16.97823 -16.30860 -16.28049 -15.92423 -15.43139 -15.33441 -15.16288 -14.89973 -14.62537 -14.29042 -14.22690 -13.88080 -13.65799 -13.43799 -13.08436 -12.79956 -12.59997 -12.41452 -12.24183 -12.14953 -12.03045 -11.86357 -11.64141 -11.12718 -10.90253 -10.71539 -10.29070 -9.82294 -9.69316 -9.63758 -8.43414 -6.52900 0.39488 0.50623 1.21999 1.29920 1.37912 2.18495 2.77643 2.80959 2.85179 3.03680 3.53894 3.82053 3.91873 3.98863 4.11469 4.17247 4.20618 4.27915 4.32271 4.45976 4.52609 4.56243 4.65247 4.66843 4.72757 4.81660 4.82582 4.86185 5.01398 5.06876 5.16641 5.22294 5.35047 5.38176 5.56396 5.62211 5.64462 6.04363 6.11136 6.19234 6.29122 6.50774 6.80643 7.14764 8.72787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.004695 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.603098 B = 5961.775174 C = 6040.644972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.392 6.392 3 C 0.141 3.859 4 H 0.080 0.920 5 C 0.029 3.971 6 N -0.474 5.474 7 C 0.029 3.971 8 C 0.176 3.824 9 O -0.557 6.557 10 C -0.547 4.547 11 H 0.045 0.955 12 C 0.024 3.976 13 N -0.931 5.931 14 Si 0.921 3.079 15 H -0.253 1.253 16 H -0.234 1.234 17 H -0.283 1.283 18 C 0.017 3.983 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.117 4.117 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.351 0.649 33 H 0.271 0.729 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 14.101 -13.705 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.311 6.311 3 C 0.083 3.917 4 H 0.098 0.902 5 C -0.099 4.099 6 N -0.197 5.197 7 C -0.100 4.100 8 C 0.136 3.864 9 O -0.368 6.368 10 C -0.585 4.585 11 H 0.063 0.937 12 C -0.176 4.176 13 N -0.569 5.569 14 Si 0.745 3.255 15 H -0.178 1.178 16 H -0.157 1.157 17 H -0.210 1.210 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.135 4.135 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.202 0.798 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.829 14.842 -13.497 22.340 hybrid contribution -0.052 -1.710 0.029 1.711 sum -9.881 13.133 -13.468 21.248 Atomic orbital electron populations 1.22849 0.80199 1.03236 1.00283 1.87977 1.20891 1.27487 1.94772 1.20867 0.94482 0.85172 0.91180 0.90243 1.22764 0.95795 1.01697 0.89683 1.68484 1.19055 1.18375 1.13766 1.23931 0.92178 0.96286 0.97583 1.20778 0.90835 0.93508 0.81309 1.86428 1.73427 1.39609 1.37310 1.21602 1.00224 0.93289 1.43404 0.93682 1.25847 1.02093 0.94982 0.94668 1.70024 1.38783 1.00942 1.47193 0.86301 0.80302 0.78646 0.80245 1.17844 1.15745 1.20958 1.24524 0.99622 0.88582 0.98487 1.20378 1.01577 0.94744 0.95403 1.21063 0.98866 0.99565 0.93561 1.21413 1.00286 0.97130 0.96054 1.21517 0.98855 0.92937 1.00663 1.21455 0.99297 1.00909 0.92498 1.21253 0.99995 0.94542 0.97752 0.89234 0.93709 0.93272 0.88199 0.94840 0.89243 0.90883 0.79822 0.91934 0.91929 0.91204 0.87225 0.84709 0.83615 0.83426 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.81 113.37 1.23 1.98 16 2 O -0.39 -12.38 6.96 -148.98 -1.04 -13.41 16 3 C 0.14 4.01 2.58 29.85 0.08 4.09 16 4 H 0.08 2.12 7.70 -2.39 -0.02 2.10 16 5 C 0.03 0.95 4.68 86.30 0.40 1.35 16 6 N -0.47 -18.46 6.26 -910.19 -5.70 -24.16 16 7 C 0.03 1.22 7.37 86.41 0.64 1.85 16 8 C 0.18 8.64 1.05 -10.89 -0.01 8.63 16 9 O -0.56 -27.38 13.35 -148.98 -1.99 -29.36 16 10 C -0.55 -31.49 9.19 25.60 0.24 -31.25 16 11 H 0.04 2.85 8.06 -2.91 -0.02 2.82 16 12 C 0.02 1.37 5.47 84.66 0.46 1.84 16 13 N -0.93 -56.94 13.96 21.45 0.30 -56.64 16 14 Si 0.92 41.97 24.30 68.60 1.67 43.64 16 15 H -0.25 -10.82 7.05 99.48 0.70 -10.12 16 16 H -0.23 -9.95 5.15 99.48 0.51 -9.44 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 C 0.02 0.75 4.45 86.37 0.38 1.14 16 19 C -0.12 -3.00 4.96 -19.87 -0.10 -3.10 16 20 C -0.11 -2.87 9.35 22.27 0.21 -2.66 16 21 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 22 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 23 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 24 C -0.12 -2.38 9.68 22.27 0.22 -2.16 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.03 1.19 7.70 -2.39 -0.02 1.17 16 30 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.07 3.04 7.74 -2.38 -0.02 3.03 16 32 H 0.35 16.31 3.57 -74.06 -0.26 16.05 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.06 2.92 7.32 -2.38 -0.02 2.90 16 35 H 0.07 3.06 6.76 -2.39 -0.02 3.05 16 36 H 0.11 3.13 7.64 -2.91 -0.02 3.11 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -67.08 321.56 -1.79 -68.87 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.56 Total: 35.58 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.41 Total: -24.52 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -5.40 Total: -80.80 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -3.03 Total: -42.78 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.67 Total: 43.64 kcal Total: -67.08 -1.79 -68.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.022 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds