Wall clock time and date at job start Mon Mar 30 2020 01:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00030 * 2 1 4 4 C 1.52994 * 109.47390 * 270.00404 * 3 2 1 5 5 C 1.52997 * 109.47445 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47481 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00068 * 180.02562 * 2 1 3 8 8 O 1.21283 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99988 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46940 * 59.99761 * 9 7 2 11 11 C 1.50699 * 109.46615 * 299.99884 * 9 7 2 12 12 H 1.08003 * 119.99853 * 125.77753 * 11 9 7 13 13 C 1.37873 * 120.00411 * 305.76806 * 11 9 7 14 14 N 1.31522 * 119.99791 * 5.09607 * 13 11 9 15 15 Si 1.86797 * 120.00333 * 185.09658 * 13 11 9 16 16 H 1.48499 * 109.47122 * 60.00121 * 15 13 11 17 17 H 1.48496 * 109.47451 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47043 * 300.00091 * 15 13 11 19 19 C 1.50699 * 109.47041 * 180.02562 * 9 7 2 20 20 C 1.38231 * 120.00063 * 115.07745 * 19 9 7 21 21 C 1.38232 * 119.99952 * 179.97438 * 20 19 9 22 22 C 1.38230 * 120.00195 * 359.95463 * 21 20 19 23 23 C 1.38241 * 119.99933 * 359.97438 * 22 21 20 24 24 C 1.38232 * 119.99818 * 0.06997 * 23 22 21 25 25 H 1.08995 * 109.47047 * 269.99745 * 1 2 3 26 26 H 1.08998 * 109.47230 * 29.99906 * 1 2 3 27 27 H 1.08997 * 109.47212 * 149.99803 * 1 2 3 28 28 H 1.08997 * 109.46677 * 30.00657 * 3 2 1 29 29 H 1.08997 * 109.47239 * 150.00072 * 3 2 1 30 30 H 1.09007 * 109.47337 * 299.99909 * 4 3 2 31 31 H 1.09007 * 109.47343 * 59.99557 * 4 3 2 32 32 H 1.09004 * 109.47310 * 300.00085 * 5 4 3 33 33 H 1.08997 * 109.47153 * 59.99687 * 5 4 3 34 34 H 0.96703 * 113.99782 * 179.97438 * 6 5 4 35 35 H 0.96998 * 120.00050 * 179.97438 * 14 13 11 36 36 H 1.08004 * 120.00125 * 359.97438 * 20 19 9 37 37 H 1.08003 * 119.99920 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00128 * 179.72133 * 22 21 20 39 39 H 1.07996 * 119.99976 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.99766 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2169 3.0358 -1.4424 6 8 3.4556 3.4481 -2.7897 7 6 2.1389 -1.1672 -0.0005 8 8 3.3517 -1.1672 -0.0010 9 6 1.3854 -2.4723 -0.0017 10 1 0.7591 -2.5294 -0.8919 11 6 0.5186 -2.5529 1.2284 12 1 -0.5398 -2.7449 1.1316 13 6 1.0767 -2.3817 2.4775 14 7 2.3440 -2.0492 2.5915 15 14 0.0328 -2.6220 4.0078 16 1 -0.4913 -4.0112 4.0364 17 1 0.8621 -2.3804 5.2157 18 1 -1.1024 -1.6650 3.9879 19 6 2.3647 -3.6177 -0.0014 20 6 2.4274 -4.4733 1.0825 21 6 3.3253 -5.5242 1.0825 22 6 4.1600 -5.7202 -0.0019 23 6 4.0963 -4.8655 -1.0865 24 6 3.1990 -3.8140 -1.0861 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0416 0.9509 -1.9564 31 1 1.5000 1.8408 -1.9563 32 1 2.6275 3.7953 -0.9286 33 1 4.1693 2.9059 -0.9285 34 1 3.9369 4.2834 -2.8659 35 1 2.7366 -1.9284 3.4703 36 1 1.7748 -4.3206 1.9294 37 1 3.3746 -6.1924 1.9295 38 1 4.8646 -6.5387 0.0000 39 1 4.7486 -5.0184 -1.9335 40 1 3.1495 -3.1461 -1.9333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556326145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:32 Heat of formation + Delta-G solvation = -78.001392 kcal Electronic energy + Delta-G solvation = -22284.391269 eV Core-core repulsion = 19063.390534 eV Total energy + Delta-G solvation = -3221.000736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84211 -39.34732 -38.00301 -36.22496 -35.63138 -33.09885 -32.44813 -31.33250 -29.17164 -27.56160 -26.46965 -25.15635 -22.96919 -22.74311 -21.84059 -19.96959 -18.75236 -18.23830 -17.48208 -17.13151 -16.83743 -16.56960 -16.14138 -15.89422 -15.40868 -15.19121 -14.73803 -14.23084 -14.13118 -14.07221 -13.69343 -13.67961 -13.31930 -13.10856 -13.05288 -12.76199 -12.64580 -12.53560 -12.13691 -12.09663 -11.92221 -11.78668 -11.44162 -11.18235 -10.89195 -10.51075 -10.11666 -9.45168 -9.20971 -9.10735 -8.06807 -6.22612 0.81796 0.91733 1.43349 1.46981 1.52121 2.34575 2.45705 2.59371 3.19959 3.29733 3.47773 3.92731 4.22392 4.28598 4.33357 4.35629 4.41832 4.48158 4.57122 4.62406 4.66990 4.69927 4.77903 4.92356 4.96678 5.05314 5.14505 5.17899 5.24385 5.27114 5.41551 5.55136 5.70815 5.84749 5.93785 5.98259 6.10415 6.40849 6.50880 6.75150 6.90954 6.99567 7.42227 7.95471 8.93145 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.007041 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.010583 B = 3975.511220 C = 5369.797056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.623 5.623 3 C 0.128 3.872 4 C -0.123 4.123 5 C 0.085 3.915 6 O -0.595 6.595 7 C 0.556 3.444 8 O -0.589 6.589 9 C 0.048 3.952 10 H 0.062 0.938 11 C -0.524 4.524 12 H 0.073 0.927 13 C 0.039 3.961 14 N -0.878 5.878 15 Si 0.937 3.063 16 H -0.269 1.269 17 H -0.297 1.297 18 H -0.265 1.265 19 C -0.042 4.042 20 C -0.085 4.085 21 C -0.156 4.156 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.132 4.132 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.398 0.602 35 H 0.256 0.744 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 5.444 -5.096 7.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.356 5.356 3 C 0.004 3.996 4 C -0.162 4.162 5 C 0.007 3.993 6 O -0.403 6.403 7 C 0.347 3.653 8 O -0.469 6.469 9 C 0.027 3.973 10 H 0.080 0.920 11 C -0.562 4.562 12 H 0.091 0.909 13 C -0.165 4.165 14 N -0.513 5.513 15 Si 0.763 3.237 16 H -0.194 1.194 17 H -0.223 1.223 18 H -0.189 1.189 19 C -0.043 4.043 20 C -0.103 4.103 21 C -0.174 4.174 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.150 4.150 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.248 0.752 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.611 4.946 -5.073 7.266 hybrid contribution 0.069 0.460 1.346 1.424 sum -1.542 5.406 -3.727 6.746 Atomic orbital electron populations 1.21636 0.78392 1.02374 1.01378 1.47630 1.07747 1.05033 1.75196 1.21075 0.97070 0.85831 0.95575 1.21764 1.00769 0.96456 0.97253 1.22016 0.98770 0.95356 0.83174 1.86429 1.80515 1.46006 1.27375 1.20970 0.86882 0.85958 0.71499 1.90477 1.16526 1.87966 1.51950 1.18025 0.93115 0.87928 0.98228 0.91991 1.20845 0.94640 1.51316 0.89439 0.90889 1.25529 0.95425 0.94254 1.01260 1.70237 1.12669 1.44586 1.23812 0.85927 0.79111 0.79264 0.79390 1.19414 1.22340 1.18944 1.20010 0.96028 0.95201 0.93093 1.21386 0.97813 0.93307 0.97784 1.21376 0.97831 0.98946 0.99215 1.21207 1.00058 1.00535 0.93922 1.21185 0.99365 0.95878 0.99552 1.21032 0.97444 0.98015 0.98521 0.93878 0.90178 0.91321 0.88877 0.93457 0.94570 0.90703 0.90905 0.93745 0.75178 0.93425 0.86484 0.85816 0.84202 0.84749 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.53 9.15 127.77 1.17 4.70 16 2 N -0.62 -25.55 2.87 -846.77 -2.43 -27.98 16 3 C 0.13 4.50 5.41 86.38 0.47 4.97 16 4 C -0.12 -3.86 5.91 30.59 0.18 -3.68 16 5 C 0.08 2.07 7.05 71.98 0.51 2.58 16 6 O -0.59 -14.33 13.66 -148.98 -2.04 -16.36 16 7 C 0.56 27.45 5.29 87.66 0.46 27.92 16 8 O -0.59 -33.46 14.73 -3.04 -0.04 -33.50 16 9 C 0.05 2.33 1.89 -13.03 -0.02 2.30 16 10 H 0.06 2.78 7.40 -2.39 -0.02 2.77 16 11 C -0.52 -25.36 5.65 25.60 0.14 -25.22 16 12 H 0.07 3.36 7.82 -2.91 -0.02 3.34 16 13 C 0.04 1.93 3.18 84.65 0.27 2.20 16 14 N -0.88 -48.41 10.42 21.45 0.22 -48.19 16 15 Si 0.94 40.08 29.54 68.60 2.03 42.10 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 C -0.04 -2.09 4.50 -19.87 -0.09 -2.18 16 20 C -0.08 -4.13 8.00 22.27 0.18 -3.95 16 21 C -0.16 -6.52 10.05 22.27 0.22 -6.29 16 22 C -0.14 -5.23 10.05 22.27 0.22 -5.01 16 23 C -0.14 -5.56 10.05 22.27 0.22 -5.34 16 24 C -0.13 -5.98 8.74 22.27 0.19 -5.78 16 25 H 0.04 1.54 7.88 -2.39 -0.02 1.52 16 26 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 27 H 0.07 2.33 6.14 -2.39 -0.01 2.32 16 28 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 29 H 0.05 1.96 7.42 -2.39 -0.02 1.94 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.36 16 31 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.40 5.20 9.12 -74.06 -0.68 4.53 16 35 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.12 6.04 4.97 -2.91 -0.01 6.02 16 37 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 38 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 40 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -68.41 327.44 2.23 -66.18 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.36 Total: 30.53 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.13 Total: -12.78 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -2.21 Total: -76.17 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.08 Total: -49.86 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -68.41 2.23 -66.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556326145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.820 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds