Wall clock time and date at job start Mon Mar 30 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00039 * 2 1 4 4 C 1.53005 * 109.47006 * 270.00253 * 3 2 1 5 5 C 1.53002 * 109.47223 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47005 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00286 * 179.97438 * 2 1 3 8 8 O 1.21285 * 120.00192 * 184.70778 * 7 2 1 9 9 C 1.50700 * 119.99910 * 4.71123 * 7 2 1 10 10 H 1.09001 * 109.46547 * 334.46381 * 9 7 2 11 11 C 1.50703 * 109.46811 * 94.46103 * 9 7 2 12 12 H 1.08001 * 119.99716 * 237.06149 * 11 9 7 13 13 C 1.37873 * 119.99937 * 56.79472 * 11 9 7 14 14 N 1.31516 * 120.00112 * 9.56861 * 13 11 9 15 15 Si 1.86798 * 119.99899 * 189.56902 * 13 11 9 16 16 H 1.48500 * 109.47057 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47302 * 119.99605 * 15 13 11 18 18 H 1.48494 * 109.47349 * 239.99657 * 15 13 11 19 19 C 1.50692 * 109.47305 * 214.46382 * 9 7 2 20 20 C 1.38239 * 120.00343 * 216.05130 * 19 9 7 21 21 C 1.38229 * 120.00385 * 179.80856 * 20 19 9 22 22 C 1.38238 * 119.99589 * 0.39617 * 21 20 19 23 23 C 1.38234 * 120.00237 * 359.85547 * 22 21 20 24 24 C 1.38236 * 120.00153 * 359.95834 * 23 22 21 25 25 H 1.09004 * 109.47081 * 265.20867 * 1 2 3 26 26 H 1.09001 * 109.46886 * 25.20784 * 1 2 3 27 27 H 1.08996 * 109.46890 * 145.21126 * 1 2 3 28 28 H 1.09005 * 109.47413 * 29.99515 * 3 2 1 29 29 H 1.08999 * 109.47782 * 150.00331 * 3 2 1 30 30 H 1.09006 * 109.46954 * 299.99302 * 4 3 2 31 31 H 1.08996 * 109.47282 * 59.99359 * 4 3 2 32 32 H 1.08999 * 109.46867 * 299.99313 * 5 4 3 33 33 H 1.08995 * 109.47079 * 59.99654 * 5 4 3 34 34 H 0.96703 * 113.99472 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99916 * 180.02562 * 14 13 11 36 36 H 1.08002 * 119.99108 * 359.97438 * 20 19 9 37 37 H 1.07993 * 120.00317 * 180.22623 * 21 20 19 38 38 H 1.08004 * 120.00004 * 179.83153 * 22 21 20 39 39 H 1.08003 * 120.00160 * 179.97438 * 23 22 21 40 40 H 1.07992 * 119.99830 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2180 3.0351 -1.4426 6 8 3.4566 3.4473 -2.7900 7 6 2.1389 -1.1672 0.0005 8 8 3.3487 -1.1689 0.0867 9 6 1.3893 -2.4702 -0.1061 10 1 0.3754 -2.3378 0.2715 11 6 1.3358 -2.9022 -1.5489 12 1 0.3824 -3.0775 -2.0250 13 6 2.5037 -3.0684 -2.2625 14 7 3.6633 -3.0354 -1.6429 15 14 2.4390 -3.3406 -4.1094 16 1 1.0244 -3.3361 -4.5611 17 1 3.1819 -2.2535 -4.7963 18 1 3.0593 -4.6489 -4.4390 19 6 2.0950 -3.5238 0.7080 20 6 2.1338 -4.8315 0.2615 21 6 2.7845 -5.7972 1.0063 22 6 3.3894 -5.4568 2.2017 23 6 3.3462 -4.1502 2.6509 24 6 2.6987 -3.1836 1.9041 25 1 -0.3633 -0.0858 1.0241 26 1 -0.3633 0.9298 -0.4377 27 1 -0.3633 -0.8440 -0.5863 28 1 1.6084 2.0285 0.5138 29 1 3.1500 1.1385 0.5138 30 1 3.0416 0.9508 -1.9564 31 1 1.5001 1.8407 -1.9564 32 1 2.6293 3.7950 -0.9287 33 1 4.1704 2.9044 -0.9289 34 1 3.9394 4.2818 -2.8663 35 1 4.4850 -3.1520 -2.1450 36 1 1.6579 -5.0980 -0.6707 37 1 2.8179 -6.8181 0.6556 38 1 3.8955 -6.2118 2.7851 39 1 3.8184 -3.8843 3.5851 40 1 2.6654 -2.1628 2.2549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556326146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:34 Heat of formation + Delta-G solvation = -54.057800 kcal Electronic energy + Delta-G solvation = -22297.946595 eV Core-core repulsion = 19077.984131 eV Total energy + Delta-G solvation = -3219.962464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.14983 -37.70448 -36.84177 -34.73293 -33.45124 -31.75742 -30.66349 -29.69292 -27.41890 -26.36184 -24.86115 -23.39673 -21.48035 -21.24893 -20.24039 -18.30060 -17.19679 -16.70161 -15.95895 -15.63332 -15.30365 -14.86499 -14.59053 -14.18568 -13.85318 -13.60459 -13.26762 -12.83664 -12.48498 -12.29335 -12.16353 -12.03457 -11.90302 -11.70138 -11.39276 -11.22789 -10.92506 -10.89747 -10.67015 -10.59608 -10.34836 -10.02254 -9.84104 -9.60999 -9.35174 -8.53383 -8.20734 -7.77152 -7.67636 -7.35201 -5.96610 -4.15540 2.56729 2.62337 3.27944 3.38427 3.38733 3.84323 4.18324 4.41299 4.50360 5.00858 5.16104 5.26362 5.35486 5.50795 5.60715 5.71348 5.80801 5.86513 5.93994 5.97333 6.05671 6.09191 6.20929 6.31602 6.43508 6.58673 6.66163 6.67109 6.76876 6.86890 7.17206 7.21129 7.44867 7.55639 7.66190 7.69916 7.77999 7.85908 8.17971 8.28950 8.46949 8.84246 9.49097 9.69642 10.98269 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.006987 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.788736 B = 4006.433293 C = 4987.259873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.636 5.636 3 C 0.126 3.874 4 C -0.136 4.136 5 C 0.080 3.920 6 O -0.574 6.574 7 C 0.524 3.476 8 O -0.504 6.504 9 C 0.063 3.937 10 H 0.052 0.948 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.076 3.924 14 N -0.810 5.810 15 Si 0.878 3.122 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.001 3.999 20 C -0.069 4.069 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.116 4.116 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.374 0.626 35 H 0.261 0.739 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 6.933 4.607 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.374 5.374 3 C 0.002 3.998 4 C -0.175 4.175 5 C 0.002 3.998 6 O -0.379 6.379 7 C 0.314 3.686 8 O -0.376 6.376 9 C 0.042 3.958 10 H 0.070 0.930 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.135 4.135 14 N -0.440 5.440 15 Si 0.705 3.295 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.000 4.000 20 C -0.086 4.086 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.155 4.155 24 C -0.134 4.134 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.220 0.780 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.518 6.320 4.534 8.537 hybrid contribution 0.558 0.594 -1.136 1.398 sum -2.960 6.915 3.397 8.253 Atomic orbital electron populations 1.21624 0.80937 1.02537 1.00477 1.48056 1.06117 1.05533 1.77685 1.21006 0.97874 0.86057 0.94855 1.21923 1.00771 0.95910 0.98886 1.22132 0.98618 0.96177 0.82849 1.86540 1.79716 1.44139 1.27475 1.21562 0.88507 0.84750 0.73763 1.90624 1.14091 1.86467 1.46392 1.17943 0.93366 0.87797 0.96727 0.93036 1.20546 0.93117 1.50646 0.93886 0.91623 1.25056 0.95732 0.94809 0.97909 1.70219 0.97162 1.42086 1.34575 0.86752 0.78310 0.77853 0.86560 1.19590 1.20949 1.20924 1.19884 0.94298 0.94640 0.91204 1.20979 0.97272 0.92373 0.98025 1.20969 1.00489 0.98659 0.95718 1.20734 1.02558 0.95931 0.97512 1.20775 1.01425 0.93656 0.99610 1.20862 0.99216 0.97706 0.95637 0.94058 0.92639 0.90263 0.92021 0.90474 0.90439 0.91634 0.94064 0.93642 0.78033 0.92887 0.85796 0.88007 0.88211 0.88190 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 9.82 59.85 0.59 1.94 16 2 N -0.64 -12.29 2.87 -181.56 -0.52 -12.81 16 3 C 0.13 2.11 5.42 -4.04 -0.02 2.09 16 4 C -0.14 -2.33 5.91 -26.73 -0.16 -2.49 16 5 C 0.08 1.11 7.05 37.16 0.26 1.37 16 6 O -0.57 -8.24 13.66 -35.23 -0.48 -8.72 16 7 C 0.52 12.41 5.28 -10.98 -0.06 12.36 16 8 O -0.50 -13.73 12.99 5.55 0.07 -13.66 16 9 C 0.06 1.49 2.06 -94.08 -0.19 1.30 16 10 H 0.05 1.10 6.27 -51.93 -0.33 0.77 16 11 C -0.54 -13.88 7.11 -34.44 -0.24 -14.12 16 12 H 0.07 1.63 7.83 -52.49 -0.41 1.22 16 13 C 0.08 2.01 4.56 -17.82 -0.08 1.93 16 14 N -0.81 -23.05 9.76 55.43 0.54 -22.51 16 15 Si 0.88 20.95 29.55 -169.99 -5.02 15.92 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 C 0.00 0.02 4.18 -104.63 -0.44 -0.42 16 20 C -0.07 -1.59 8.33 -39.58 -0.33 -1.92 16 21 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 22 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 23 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 24 C -0.12 -2.63 8.51 -39.58 -0.34 -2.97 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.71 8.04 -51.93 -0.42 0.30 16 27 H 0.08 1.31 6.46 -51.93 -0.34 0.97 16 28 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.08 1.41 7.36 -51.93 -0.38 1.02 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.37 3.27 9.12 45.56 0.42 3.69 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.95 6.70 -52.49 -0.35 2.60 16 37 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.10 2.22 7.06 -52.49 -0.37 1.85 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -32.51 328.62 -7.78 -40.29 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.11 Total: 7.34 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.21 Total: -10.80 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.02 Total: -35.32 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.41 Total: -22.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.51 -7.78 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556326146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.765 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds