Wall clock time and date at job start Mon Mar 30 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00039 * 2 1 4 4 C 1.53005 * 109.47006 * 270.00253 * 3 2 1 5 5 C 1.53002 * 109.47223 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47005 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00286 * 179.97438 * 2 1 3 8 8 O 1.21285 * 120.00192 * 184.70778 * 7 2 1 9 9 C 1.50700 * 119.99910 * 4.71123 * 7 2 1 10 10 H 1.09001 * 109.46547 * 334.46381 * 9 7 2 11 11 C 1.50703 * 109.46811 * 94.46103 * 9 7 2 12 12 H 1.08001 * 119.99716 * 237.06149 * 11 9 7 13 13 C 1.37873 * 119.99937 * 56.79472 * 11 9 7 14 14 N 1.31516 * 120.00112 * 9.56861 * 13 11 9 15 15 Si 1.86798 * 119.99899 * 189.56902 * 13 11 9 16 16 H 1.48500 * 109.47057 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47302 * 119.99605 * 15 13 11 18 18 H 1.48494 * 109.47349 * 239.99657 * 15 13 11 19 19 C 1.50692 * 109.47305 * 214.46382 * 9 7 2 20 20 C 1.38239 * 120.00343 * 216.05130 * 19 9 7 21 21 C 1.38229 * 120.00385 * 179.80856 * 20 19 9 22 22 C 1.38238 * 119.99589 * 0.39617 * 21 20 19 23 23 C 1.38234 * 120.00237 * 359.85547 * 22 21 20 24 24 C 1.38236 * 120.00153 * 359.95834 * 23 22 21 25 25 H 1.09004 * 109.47081 * 265.20867 * 1 2 3 26 26 H 1.09001 * 109.46886 * 25.20784 * 1 2 3 27 27 H 1.08996 * 109.46890 * 145.21126 * 1 2 3 28 28 H 1.09005 * 109.47413 * 29.99515 * 3 2 1 29 29 H 1.08999 * 109.47782 * 150.00331 * 3 2 1 30 30 H 1.09006 * 109.46954 * 299.99302 * 4 3 2 31 31 H 1.08996 * 109.47282 * 59.99359 * 4 3 2 32 32 H 1.08999 * 109.46867 * 299.99313 * 5 4 3 33 33 H 1.08995 * 109.47079 * 59.99654 * 5 4 3 34 34 H 0.96703 * 113.99472 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99916 * 180.02562 * 14 13 11 36 36 H 1.08002 * 119.99108 * 359.97438 * 20 19 9 37 37 H 1.07993 * 120.00317 * 180.22623 * 21 20 19 38 38 H 1.08004 * 120.00004 * 179.83153 * 22 21 20 39 39 H 1.08003 * 120.00160 * 179.97438 * 23 22 21 40 40 H 1.07992 * 119.99830 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2180 3.0351 -1.4426 6 8 3.4566 3.4473 -2.7900 7 6 2.1389 -1.1672 0.0005 8 8 3.3487 -1.1689 0.0867 9 6 1.3893 -2.4702 -0.1061 10 1 0.3754 -2.3378 0.2715 11 6 1.3358 -2.9022 -1.5489 12 1 0.3824 -3.0775 -2.0250 13 6 2.5037 -3.0684 -2.2625 14 7 3.6633 -3.0354 -1.6429 15 14 2.4390 -3.3406 -4.1094 16 1 1.0244 -3.3361 -4.5611 17 1 3.1819 -2.2535 -4.7963 18 1 3.0593 -4.6489 -4.4390 19 6 2.0950 -3.5238 0.7080 20 6 2.1338 -4.8315 0.2615 21 6 2.7845 -5.7972 1.0063 22 6 3.3894 -5.4568 2.2017 23 6 3.3462 -4.1502 2.6509 24 6 2.6987 -3.1836 1.9041 25 1 -0.3633 -0.0858 1.0241 26 1 -0.3633 0.9298 -0.4377 27 1 -0.3633 -0.8440 -0.5863 28 1 1.6084 2.0285 0.5138 29 1 3.1500 1.1385 0.5138 30 1 3.0416 0.9508 -1.9564 31 1 1.5001 1.8407 -1.9564 32 1 2.6293 3.7950 -0.9287 33 1 4.1704 2.9044 -0.9289 34 1 3.9394 4.2818 -2.8663 35 1 4.4850 -3.1520 -2.1450 36 1 1.6579 -5.0980 -0.6707 37 1 2.8179 -6.8181 0.6556 38 1 3.8955 -6.2118 2.7851 39 1 3.8184 -3.8843 3.5851 40 1 2.6654 -2.1628 2.2549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556326146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:34 Heat of formation + Delta-G solvation = -76.013743 kcal Electronic energy + Delta-G solvation = -22298.898676 eV Core-core repulsion = 19077.984131 eV Total energy + Delta-G solvation = -3220.914545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85373 -39.29946 -38.03800 -36.30266 -35.35504 -33.26374 -32.37026 -31.37178 -29.15113 -27.69254 -26.48930 -25.08669 -23.03531 -22.75603 -21.85696 -19.96514 -18.57054 -18.26037 -17.60535 -17.32556 -16.77557 -16.50040 -16.22729 -15.72480 -15.45908 -15.28917 -14.56562 -14.46033 -14.05891 -13.92172 -13.77707 -13.69672 -13.32744 -13.17630 -12.98837 -12.87732 -12.83662 -12.47461 -12.22144 -12.13085 -11.95258 -11.75733 -11.38970 -11.19629 -10.92283 -10.56480 -10.04552 -9.41746 -9.26833 -9.06409 -7.99419 -6.20783 0.88681 0.95483 1.34322 1.40137 1.47194 2.27864 2.42060 2.55922 3.22969 3.31262 3.43991 3.90148 4.20288 4.28253 4.34518 4.36973 4.40284 4.51324 4.52515 4.59037 4.62625 4.66696 4.78224 4.88003 4.92799 5.02061 5.08414 5.15576 5.17698 5.24767 5.48809 5.54804 5.70587 5.89325 5.95948 6.00301 6.03160 6.42737 6.53968 6.67418 6.89695 6.97613 7.44693 7.94632 8.92878 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.006987 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.788736 B = 4006.433293 C = 4987.259873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.639 5.639 3 C 0.127 3.873 4 C -0.130 4.130 5 C 0.086 3.914 6 O -0.600 6.600 7 C 0.522 3.478 8 O -0.550 6.550 9 C 0.054 3.946 10 H 0.068 0.932 11 C -0.541 4.541 12 H 0.067 0.933 13 C 0.037 3.963 14 N -0.839 5.839 15 Si 0.927 3.073 16 H -0.258 1.258 17 H -0.298 1.298 18 H -0.281 1.281 19 C -0.020 4.020 20 C -0.092 4.092 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.398 0.602 35 H 0.249 0.751 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 7.756 5.645 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.004 3.996 4 C -0.169 4.169 5 C 0.008 3.992 6 O -0.408 6.408 7 C 0.312 3.688 8 O -0.425 6.425 9 C 0.033 3.967 10 H 0.086 0.914 11 C -0.579 4.579 12 H 0.085 0.915 13 C -0.170 4.170 14 N -0.471 5.471 15 Si 0.754 3.246 16 H -0.182 1.182 17 H -0.225 1.225 18 H -0.207 1.207 19 C -0.021 4.021 20 C -0.110 4.110 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.248 0.752 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.556 7.178 5.564 10.161 hybrid contribution 0.800 0.377 -1.416 1.670 sum -3.756 7.555 4.148 9.402 Atomic orbital electron populations 1.21851 0.78409 1.03648 1.02116 1.48079 1.07884 1.05321 1.76152 1.21170 0.97701 0.85924 0.94826 1.21827 1.00337 0.96298 0.98417 1.22069 0.98847 0.95241 0.83054 1.86471 1.80397 1.46093 1.27870 1.21466 0.87951 0.85974 0.73401 1.90587 1.15902 1.87365 1.48676 1.18032 0.94435 0.88333 0.95893 0.91433 1.20786 0.92779 1.49361 0.94954 0.91492 1.25598 0.95617 0.95017 1.00812 1.70394 0.97244 1.44284 1.35193 0.85977 0.78594 0.77077 0.82970 1.18174 1.22515 1.20701 1.19963 0.95325 0.94885 0.91958 1.20971 0.98811 0.93040 0.98166 1.21297 0.99537 0.99414 0.95887 1.21150 1.01597 0.96489 0.97154 1.21156 1.00472 0.93637 1.00368 1.20926 1.00202 0.98056 0.95937 0.91606 0.89414 0.91801 0.87097 0.92488 0.96350 0.91375 0.90018 0.93599 0.75217 0.94134 0.87429 0.85474 0.84405 0.85264 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 9.82 127.77 1.25 3.62 16 2 N -0.64 -24.32 2.87 -846.73 -2.43 -26.75 16 3 C 0.13 4.11 5.42 86.38 0.47 4.57 16 4 C -0.13 -4.42 5.91 30.60 0.18 -4.24 16 5 C 0.09 2.21 7.05 71.98 0.51 2.71 16 6 O -0.60 -16.38 13.66 -148.98 -2.04 -18.42 16 7 C 0.52 25.26 5.28 87.66 0.46 25.72 16 8 O -0.55 -31.13 12.99 -3.04 -0.04 -31.17 16 9 C 0.05 2.62 2.06 -13.03 -0.03 2.60 16 10 H 0.07 2.91 6.27 -2.39 -0.01 2.90 16 11 C -0.54 -28.14 7.11 25.60 0.18 -27.96 16 12 H 0.07 3.37 7.83 -2.91 -0.02 3.34 16 13 C 0.04 2.00 4.56 84.65 0.39 2.38 16 14 N -0.84 -49.57 9.76 21.45 0.21 -49.37 16 15 Si 0.93 44.09 29.55 68.60 2.03 46.12 16 16 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 17 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 19 C -0.02 -0.98 4.18 -19.87 -0.08 -1.07 16 20 C -0.09 -4.32 8.33 22.27 0.19 -4.14 16 21 C -0.14 -5.82 10.05 22.27 0.22 -5.59 16 22 C -0.15 -5.44 10.05 22.27 0.22 -5.22 16 23 C -0.14 -5.48 10.05 22.27 0.22 -5.25 16 24 C -0.13 -6.07 8.51 22.27 0.19 -5.88 16 25 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.09 1.96 8.04 -2.39 -0.02 1.94 16 27 H 0.06 2.04 6.46 -2.39 -0.02 2.03 16 28 H 0.11 2.51 8.07 -2.38 -0.02 2.49 16 29 H 0.06 2.09 7.36 -2.39 -0.02 2.07 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.40 6.17 9.12 -74.06 -0.68 5.50 16 35 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.11 5.28 6.70 -2.91 -0.02 5.26 16 37 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.09 4.23 7.06 -2.91 -0.02 4.21 16 Total: -1.00 -73.67 328.62 2.46 -71.21 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.36 Total: 26.11 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.38 Total: -17.74 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -2.22 Total: -76.12 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -2.07 Total: -49.59 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.67 2.46 -71.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556326146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.803 kcal (2) G-P(sol) polarization free energy of solvation -73.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds