Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30844 * 125.90250 * 2 1 4 4 N 1.40084 * 108.20781 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03630 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92497 * 359.75714 * 4 3 2 7 7 C 1.50696 * 126.12955 * 180.24123 * 6 4 3 8 8 C 1.35321 * 107.74687 * 0.39214 * 6 4 3 9 9 C 1.50695 * 126.04219 * 179.87369 * 8 6 4 10 10 C 1.50697 * 109.47303 * 269.71522 * 9 8 6 11 11 O 1.21296 * 120.00064 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00588 * 179.97438 * 10 9 8 13 13 C 1.37091 * 120.00283 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99697 * 223.93458 * 13 12 10 15 15 C 1.38949 * 120.00139 * 43.94006 * 13 12 10 16 16 N 1.31411 * 120.00288 * 23.99445 * 15 13 12 17 17 Si 1.86798 * 119.99909 * 204.00126 * 15 13 12 18 18 H 1.48498 * 109.47115 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47027 * 299.99636 * 17 15 13 20 20 H 1.48503 * 109.47484 * 59.99195 * 17 15 13 21 21 C 1.46508 * 119.99331 * 359.97438 * 12 10 9 22 22 C 1.52999 * 117.49303 * 189.98378 * 21 12 10 23 23 C 1.52998 * 117.49560 * 121.32488 * 21 12 10 24 24 H 1.09002 * 109.46696 * 269.97728 * 1 2 3 25 25 H 1.08999 * 109.47109 * 29.97061 * 1 2 3 26 26 H 1.08993 * 109.47187 * 149.97318 * 1 2 3 27 27 H 1.08994 * 109.47327 * 89.97012 * 5 4 3 28 28 H 1.09005 * 109.46597 * 209.97289 * 5 4 3 29 29 H 1.08999 * 109.46641 * 329.97148 * 5 4 3 30 30 H 1.09004 * 109.47013 * 270.17702 * 7 6 4 31 31 H 1.08998 * 109.46906 * 30.17591 * 7 6 4 32 32 H 1.09006 * 109.47525 * 150.17688 * 7 6 4 33 33 H 1.08999 * 109.47759 * 149.70956 * 9 8 6 34 34 H 1.09002 * 109.47051 * 29.71369 * 9 8 6 35 35 H 0.97001 * 119.99807 * 5.22298 * 16 15 13 36 36 H 1.08994 * 115.55196 * 335.65687 * 21 12 10 37 37 H 1.08992 * 117.50370 * 0.02562 * 22 21 12 38 38 H 1.09001 * 117.49773 * 145.02920 * 22 21 12 39 39 H 1.08993 * 117.50210 * 214.97707 * 23 21 12 40 40 H 1.08999 * 117.50128 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7900 1.5007 -0.0003 6 6 3.6142 -0.7154 0.0045 7 6 4.8350 -1.5990 0.0109 8 6 2.3271 -1.1331 -0.0006 9 6 1.8598 -2.5657 -0.0004 10 6 1.7038 -3.0435 -1.4211 11 8 1.9475 -2.2941 -2.3432 12 7 1.2933 -4.3035 -1.6672 13 6 1.1509 -4.7379 -2.9596 14 1 0.2812 -5.3119 -3.2436 15 6 2.1253 -4.4397 -3.9042 16 7 3.3551 -4.1806 -3.5204 17 14 1.6872 -4.4071 -5.7198 18 1 2.8943 -4.0651 -6.5142 19 1 1.1848 -5.7424 -6.1318 20 1 0.6339 -3.3874 -5.9567 21 6 0.9994 -5.2088 -0.5534 22 6 0.7663 -6.6841 -0.8850 23 6 -0.4110 -5.7962 -0.4739 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 5.0828 1.7154 1.0274 28 1 5.6094 0.9982 -0.5142 29 1 4.5563 2.4333 -0.5139 30 1 5.1338 -1.8133 -1.0152 31 1 5.6488 -1.0904 0.5277 32 1 4.6052 -2.5324 0.5250 33 1 0.9012 -2.6353 0.5137 34 1 2.5934 -3.1871 0.5134 35 1 3.6009 -4.2712 -2.5864 36 1 1.5018 -4.9773 0.3857 37 1 0.8319 -6.9812 -1.9316 38 1 1.1149 -7.4232 -0.1637 39 1 -0.8364 -5.9517 0.5175 40 1 -1.1204 -5.5089 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = 48.361065 kcal Electronic energy + Delta-G solvation = -22427.137044 eV Core-core repulsion = 19243.908547 eV Total energy + Delta-G solvation = -3183.228497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.32712 -40.42404 -37.81327 -35.31178 -34.84481 -33.83370 -32.65652 -30.62976 -30.12841 -27.50059 -26.49968 -25.31764 -23.16371 -22.88848 -21.63501 -20.48516 -20.21058 -18.55999 -17.98326 -17.32793 -16.56707 -16.51986 -15.92622 -15.54866 -15.32029 -14.89765 -14.78215 -14.61023 -14.28479 -14.02167 -13.89056 -13.74885 -13.44367 -13.23306 -12.91246 -12.78588 -12.71997 -12.68836 -12.45159 -12.24809 -12.00570 -11.82793 -11.73136 -11.43703 -11.23535 -10.61340 -9.99992 -9.93870 -9.22560 -9.11764 -8.47943 -5.96661 0.90179 1.46766 1.59492 1.66791 1.74481 1.75381 2.23939 2.50893 3.08937 3.15625 3.40562 3.57424 3.74491 4.08160 4.09582 4.15747 4.25280 4.30230 4.32072 4.37843 4.39218 4.48278 4.51922 4.58245 4.66295 4.73811 4.75982 4.87986 4.94201 4.98965 5.05594 5.16240 5.26644 5.32637 5.47067 5.76754 5.83764 6.19537 6.28021 6.78187 6.97613 7.27835 7.63382 8.28856 8.78000 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.006654 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.426072 B = 4206.981467 C = 4862.079193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.071 3.929 3 N -0.334 5.334 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.087 3.913 7 C -0.083 4.083 8 C -0.232 4.232 9 C -0.039 4.039 10 C 0.460 3.540 11 O -0.586 6.586 12 N -0.452 5.452 13 C -0.431 4.431 14 H 0.061 0.939 15 C -0.005 4.005 16 N -0.877 5.877 17 Si 1.107 2.893 18 H -0.289 1.289 19 H -0.257 1.257 20 H -0.292 1.292 21 C 0.042 3.958 22 C -0.173 4.173 23 C -0.179 4.179 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.257 0.743 36 H 0.135 0.865 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 2.594 12.553 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.094 4.094 3 N -0.158 5.158 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.041 4.041 7 C -0.141 4.141 8 C -0.243 4.243 9 C -0.080 4.080 10 C 0.250 3.750 11 O -0.467 6.467 12 N -0.174 5.174 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.211 4.211 16 N -0.510 5.510 17 Si 0.931 3.069 18 H -0.214 1.214 19 H -0.182 1.182 20 H -0.219 1.219 21 C -0.062 4.062 22 C -0.211 4.211 23 C -0.218 4.218 24 H 0.120 0.880 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.331 4.677 10.584 11.647 hybrid contribution -0.553 -1.086 1.007 1.581 sum 0.778 3.590 11.590 12.159 Atomic orbital electron populations 1.20171 0.85570 1.02826 1.03857 1.22542 0.97955 0.90333 0.98610 1.77077 0.87370 1.23115 1.28189 1.48504 1.05757 1.04423 1.57825 1.22114 0.83056 0.94574 1.04736 1.21171 0.97576 0.85085 1.00221 1.20444 0.92663 0.98224 1.02806 1.19390 0.92097 0.95404 1.17421 1.19796 1.03075 0.91622 0.93499 1.21059 0.81056 0.81407 0.91473 1.90567 1.52678 1.55458 1.47981 1.43235 1.61248 1.08376 1.04545 1.19768 1.07553 1.41799 0.86654 0.92169 1.27185 0.91970 0.93168 1.08817 1.70674 1.18700 1.42730 1.18859 0.83038 0.75302 0.77492 0.71099 1.21445 1.18191 1.21921 1.22136 0.99975 0.91813 0.92299 1.23109 1.02831 0.92944 1.02230 1.23268 0.91292 1.04161 1.03035 0.87963 0.90984 0.91737 0.88537 0.88185 0.89224 0.92200 0.87985 0.89201 0.87797 0.88508 0.93376 0.84712 0.90705 0.86304 0.85518 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.07 10.12 71.23 0.72 -1.35 16 2 C 0.07 2.74 7.22 43.10 0.31 3.05 16 3 N -0.33 -12.97 12.58 -47.38 -0.60 -13.57 16 4 N -0.38 -13.08 4.01 -356.04 -1.43 -14.51 16 5 C 0.10 2.11 11.09 127.77 1.42 3.53 16 6 C 0.09 3.15 6.93 41.41 0.29 3.44 16 7 C -0.08 -2.43 9.68 71.23 0.69 -1.74 16 8 C -0.23 -9.11 4.59 -20.14 -0.09 -9.20 16 9 C -0.04 -1.46 4.18 29.10 0.12 -1.34 16 10 C 0.46 23.10 6.47 87.66 0.57 23.67 16 11 O -0.59 -35.79 13.98 -3.08 -0.04 -35.83 16 12 N -0.45 -22.32 2.60 -613.13 -1.59 -23.92 16 13 C -0.43 -24.09 7.63 84.04 0.64 -23.45 16 14 H 0.06 3.35 7.60 -2.91 -0.02 3.33 16 15 C 0.00 -0.27 4.19 84.93 0.36 0.09 16 16 N -0.88 -54.38 12.44 21.66 0.27 -54.11 16 17 Si 1.11 53.75 29.98 68.60 2.06 55.80 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 21 C 0.04 1.58 6.02 44.99 0.27 1.85 16 22 C -0.17 -5.88 9.82 30.62 0.30 -5.58 16 23 C -0.18 -5.62 10.25 30.62 0.31 -5.31 16 24 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.19 7.92 -2.39 -0.02 2.17 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 1.87 7.67 -2.38 -0.02 1.85 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.10 2.10 7.74 -2.39 -0.02 2.09 16 32 H 0.09 2.43 7.14 -2.38 -0.02 2.42 16 33 H 0.10 3.38 7.89 -2.39 -0.02 3.36 16 34 H 0.10 3.17 6.57 -2.39 -0.02 3.16 16 35 H 0.26 15.99 7.48 -92.71 -0.69 15.30 16 36 H 0.14 4.10 6.76 -2.39 -0.02 4.09 16 37 H 0.07 3.05 6.93 -2.39 -0.02 3.03 16 38 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -82.04 333.92 5.68 -76.36 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 1.11 Total: 22.13 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 5.90 Total: -12.35 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.35 Total: -106.11 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.04 Total: -35.83 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 2.06 Total: 55.80 kcal Total: -82.04 5.68 -76.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.718 kcal (2) G-P(sol) polarization free energy of solvation -82.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds