Wall clock time and date at job start Mon Mar 30 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39750 * 125.83825 * 2 1 4 4 C 1.36109 * 107.82443 * 180.14265 * 3 2 1 5 5 N 1.39478 * 126.21376 * 179.90614 * 4 3 2 6 6 C 1.34775 * 120.00028 * 359.68709 * 5 4 3 7 7 O 1.21281 * 119.99955 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99857 * 179.97438 * 6 5 4 9 9 C 1.55238 * 110.46892 * 294.81226 * 8 6 5 10 10 C 1.54894 * 102.58338 * 203.39217 * 9 8 6 11 11 C 1.54266 * 104.31305 * 37.93170 * 10 9 8 12 12 C 1.53869 * 106.60031 * 336.32486 * 11 10 9 13 13 N 1.35255 * 107.56939 * 359.64287 * 4 3 2 14 14 C 1.46500 * 126.04772 * 180.22641 * 13 4 3 15 15 C 1.50702 * 109.47058 * 90.00136 * 14 13 4 16 16 H 1.07995 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99801 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00142 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47068 * 90.00296 * 19 17 15 21 21 H 1.48498 * 109.47124 * 210.00160 * 19 17 15 22 22 H 1.48493 * 109.46931 * 330.00056 * 19 17 15 23 23 N 1.30852 * 125.83270 * 179.74185 * 2 1 3 24 24 H 1.08999 * 109.47142 * 270.23890 * 1 2 3 25 25 H 1.09004 * 109.47098 * 30.23147 * 1 2 3 26 26 H 1.09003 * 109.47444 * 150.23459 * 1 2 3 27 27 H 1.07997 * 126.08966 * 0.03246 * 3 2 1 28 28 H 0.97003 * 119.99756 * 179.69405 * 5 4 3 29 29 H 1.09007 * 110.43017 * 57.46396 * 8 6 5 30 30 H 1.08996 * 110.89448 * 85.10781 * 9 8 6 31 31 H 1.08993 * 110.76342 * 321.62447 * 9 8 6 32 32 H 1.09002 * 110.48891 * 279.18596 * 10 9 8 33 33 H 1.08998 * 110.48494 * 156.67683 * 10 9 8 34 34 H 1.09001 * 110.03084 * 95.60669 * 11 10 9 35 35 H 1.08996 * 110.03108 * 216.98559 * 11 10 9 36 36 H 1.08999 * 110.04012 * 119.28327 * 12 11 10 37 37 H 1.09006 * 110.02998 * 240.67078 * 12 11 10 38 38 H 1.09002 * 109.47424 * 209.99653 * 14 13 4 39 39 H 1.08999 * 109.47425 * 329.99844 * 14 13 4 40 40 H 0.96997 * 120.00437 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6196 0.7120 -0.0032 5 7 4.7513 1.5274 -0.0062 6 6 4.6157 2.8683 -0.0123 7 8 3.5097 3.3659 -0.0149 8 6 5.8385 3.7492 -0.0149 9 6 6.6342 3.5773 1.3069 10 6 7.4246 4.9061 1.4002 11 6 6.4403 5.9728 0.8777 12 6 5.4318 5.2373 -0.0220 13 7 3.6092 -0.6405 0.0029 14 6 4.7869 -1.5117 0.0068 15 6 5.1908 -1.8041 1.4290 16 1 4.6268 -1.3827 2.2479 17 6 6.2808 -2.6086 1.6845 18 7 6.6330 -2.8642 2.9256 19 14 7.2568 -3.3369 0.2679 20 1 8.3477 -2.4041 -0.1128 21 1 7.8405 -4.6369 0.6857 22 1 6.3581 -3.5487 -0.8950 23 7 2.2731 -1.0608 0.0048 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3634 -0.8921 -0.5102 27 1 1.9902 2.1596 0.0005 28 1 5.6358 1.1293 -0.0039 29 1 6.4693 3.5220 -0.8744 30 1 7.3137 2.7273 1.2438 31 1 5.9572 3.4701 2.1543 32 1 8.3135 4.8663 0.7706 33 1 7.6996 5.1146 2.4341 34 1 5.9216 6.4433 1.7130 35 1 6.9772 6.7254 0.3004 36 1 4.4236 5.3507 0.3766 37 1 5.4786 5.6330 -1.0366 38 1 4.5498 -2.4457 -0.5028 39 1 5.6083 -1.0147 -0.5093 40 1 7.4001 -3.4300 3.1054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054537881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:34 Heat of formation + Delta-G solvation = 25.241176 kcal Electronic energy + Delta-G solvation = -21652.172609 eV Core-core repulsion = 18467.941558 eV Total energy + Delta-G solvation = -3184.231051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97667 -39.63215 -37.18124 -34.78036 -33.75545 -32.17017 -30.03348 -29.33289 -28.76912 -27.84384 -26.31101 -23.07918 -22.25925 -20.80310 -20.20498 -19.65396 -19.03364 -17.22358 -17.13314 -16.61190 -15.71983 -15.29371 -15.05931 -14.62867 -14.18610 -13.94642 -13.52189 -13.42966 -13.09724 -12.72347 -12.61849 -12.33842 -12.07193 -11.89645 -11.79285 -11.41395 -11.29678 -11.22847 -11.12929 -10.88638 -10.84161 -10.54721 -10.46016 -10.23012 -9.89405 -9.76706 -9.46154 -8.87519 -7.95208 -7.47818 -6.34544 -4.38910 2.23694 2.77581 3.05216 3.08136 3.16083 3.17278 3.56858 3.70696 4.13047 4.34035 4.44728 4.63239 4.91721 5.00671 5.21068 5.30452 5.33671 5.36929 5.42855 5.53556 5.61300 5.76343 5.81837 5.96092 6.02047 6.03445 6.06883 6.13150 6.18333 6.21976 6.27059 6.33179 6.39147 6.65244 6.75373 7.19244 7.45521 7.57462 7.77870 8.18366 8.32977 8.57735 8.71989 9.20135 10.77676 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.006538 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.036008 B = 4281.520364 C = 6151.694732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 C -0.294 4.294 4 C 0.305 3.695 5 N -0.640 5.640 6 C 0.526 3.474 7 O -0.515 6.515 8 C -0.109 4.109 9 C -0.118 4.118 10 C -0.123 4.123 11 C -0.124 4.124 12 C -0.111 4.111 13 N -0.345 5.345 14 C 0.230 3.770 15 C -0.545 4.545 16 H 0.081 0.919 17 C 0.081 3.919 18 N -0.883 5.883 19 Si 0.871 3.129 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.263 1.263 23 N -0.284 5.284 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.163 0.837 28 H 0.415 0.585 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 14.223 -6.642 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.325 4.325 4 C 0.083 3.917 5 N -0.287 5.287 6 C 0.313 3.687 7 O -0.389 6.389 8 C -0.131 4.131 9 C -0.156 4.156 10 C -0.160 4.160 11 C -0.162 4.162 12 C -0.149 4.149 13 N -0.130 5.130 14 C 0.111 3.889 15 C -0.583 4.583 16 H 0.099 0.901 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.697 3.303 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.188 1.188 23 N -0.109 5.109 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.180 0.820 28 H 0.251 0.749 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.267 13.155 -6.520 14.685 hybrid contribution 1.329 -0.041 -0.505 1.422 sum 1.596 13.114 -7.025 14.962 Atomic orbital electron populations 1.20032 0.87435 1.02350 1.02305 1.22058 0.96578 0.91003 1.01444 1.21276 0.89015 1.00486 1.21763 1.17971 0.88286 0.83075 1.02397 1.42858 1.08011 1.05777 1.72013 1.20585 0.91501 0.81134 0.75502 1.90605 1.26937 1.73612 1.47700 1.22222 0.94374 0.95554 1.00905 1.22613 0.98573 0.98582 0.95808 1.22343 0.98007 0.94239 1.01430 1.22146 0.96870 0.97905 0.99251 1.22079 1.00843 0.91534 1.00433 1.48884 1.06178 1.02042 1.55855 1.19925 0.79290 0.90040 0.99674 1.21191 1.14198 1.32613 0.90308 0.90066 1.24816 0.96623 0.95209 0.95764 1.69870 1.26786 1.36746 1.18537 0.86932 0.80776 0.79777 0.82861 1.19659 1.20331 1.18762 1.77357 0.85800 1.21759 1.25947 0.91162 0.91086 0.91516 0.82005 0.74916 0.87883 0.90246 0.90499 0.91371 0.91274 0.91639 0.91784 0.89590 0.91432 0.92768 0.94801 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.10 7.21 -82.44 -0.59 0.50 16 3 C -0.29 -6.05 9.58 -39.78 -0.38 -6.43 16 4 C 0.30 6.42 7.66 -153.16 -1.17 5.24 16 5 N -0.64 -11.09 5.40 -11.46 -0.06 -11.16 16 6 C 0.53 8.23 7.09 -10.98 -0.08 8.15 16 7 O -0.51 -9.34 12.55 5.56 0.07 -9.27 16 8 C -0.11 -1.24 3.26 -89.92 -0.29 -1.54 16 9 C -0.12 -1.30 6.34 -24.55 -0.16 -1.45 16 10 C -0.12 -1.09 6.82 -25.07 -0.17 -1.26 16 11 C -0.12 -1.09 6.80 -25.62 -0.17 -1.26 16 12 C -0.11 -1.17 6.19 -25.62 -0.16 -1.32 16 13 N -0.34 -7.99 3.60 -61.57 -0.22 -8.21 16 14 C 0.23 5.42 5.07 -5.19 -0.03 5.39 16 15 C -0.54 -14.90 9.94 -34.44 -0.34 -15.24 16 16 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 18 N -0.88 -25.59 13.96 55.43 0.77 -24.82 16 19 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 23 N -0.28 -6.59 12.57 33.65 0.42 -6.17 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.16 3.25 5.83 -52.49 -0.31 2.94 16 28 H 0.41 6.52 7.97 -40.82 -0.33 6.19 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.96 8.05 -51.93 -0.42 0.55 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 1.07 6.85 -51.93 -0.36 0.71 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 39 H 0.03 0.72 6.93 -51.93 -0.36 0.36 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -32.23 328.79 -7.96 -40.19 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.96 Total: 7.37 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.27 Total: -7.70 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.91 Total: -50.35 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.23 -7.96 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054537881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.432 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds