Wall clock time and date at job start Mon Mar 30 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39750 * 125.83825 * 2 1 4 4 C 1.36109 * 107.82443 * 180.14265 * 3 2 1 5 5 N 1.39478 * 126.21376 * 179.90614 * 4 3 2 6 6 C 1.34775 * 120.00028 * 359.68709 * 5 4 3 7 7 O 1.21281 * 119.99955 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99857 * 179.97438 * 6 5 4 9 9 C 1.55238 * 110.46892 * 294.81226 * 8 6 5 10 10 C 1.54894 * 102.58338 * 203.39217 * 9 8 6 11 11 C 1.54266 * 104.31305 * 37.93170 * 10 9 8 12 12 C 1.53869 * 106.60031 * 336.32486 * 11 10 9 13 13 N 1.35255 * 107.56939 * 359.64287 * 4 3 2 14 14 C 1.46500 * 126.04772 * 180.22641 * 13 4 3 15 15 C 1.50702 * 109.47058 * 90.00136 * 14 13 4 16 16 H 1.07995 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99801 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00142 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47068 * 90.00296 * 19 17 15 21 21 H 1.48498 * 109.47124 * 210.00160 * 19 17 15 22 22 H 1.48493 * 109.46931 * 330.00056 * 19 17 15 23 23 N 1.30852 * 125.83270 * 179.74185 * 2 1 3 24 24 H 1.08999 * 109.47142 * 270.23890 * 1 2 3 25 25 H 1.09004 * 109.47098 * 30.23147 * 1 2 3 26 26 H 1.09003 * 109.47444 * 150.23459 * 1 2 3 27 27 H 1.07997 * 126.08966 * 0.03246 * 3 2 1 28 28 H 0.97003 * 119.99756 * 179.69405 * 5 4 3 29 29 H 1.09007 * 110.43017 * 57.46396 * 8 6 5 30 30 H 1.08996 * 110.89448 * 85.10781 * 9 8 6 31 31 H 1.08993 * 110.76342 * 321.62447 * 9 8 6 32 32 H 1.09002 * 110.48891 * 279.18596 * 10 9 8 33 33 H 1.08998 * 110.48494 * 156.67683 * 10 9 8 34 34 H 1.09001 * 110.03084 * 95.60669 * 11 10 9 35 35 H 1.08996 * 110.03108 * 216.98559 * 11 10 9 36 36 H 1.08999 * 110.04012 * 119.28327 * 12 11 10 37 37 H 1.09006 * 110.02998 * 240.67078 * 12 11 10 38 38 H 1.09002 * 109.47424 * 209.99653 * 14 13 4 39 39 H 1.08999 * 109.47425 * 329.99844 * 14 13 4 40 40 H 0.96997 * 120.00437 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6196 0.7120 -0.0032 5 7 4.7513 1.5274 -0.0062 6 6 4.6157 2.8683 -0.0123 7 8 3.5097 3.3659 -0.0149 8 6 5.8385 3.7492 -0.0149 9 6 6.6342 3.5773 1.3069 10 6 7.4246 4.9061 1.4002 11 6 6.4403 5.9728 0.8777 12 6 5.4318 5.2373 -0.0220 13 7 3.6092 -0.6405 0.0029 14 6 4.7869 -1.5117 0.0068 15 6 5.1908 -1.8041 1.4290 16 1 4.6268 -1.3827 2.2479 17 6 6.2808 -2.6086 1.6845 18 7 6.6330 -2.8642 2.9256 19 14 7.2568 -3.3369 0.2679 20 1 8.3477 -2.4041 -0.1128 21 1 7.8405 -4.6369 0.6857 22 1 6.3581 -3.5487 -0.8950 23 7 2.2731 -1.0608 0.0048 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3634 -0.8921 -0.5102 27 1 1.9902 2.1596 0.0005 28 1 5.6358 1.1293 -0.0039 29 1 6.4693 3.5220 -0.8744 30 1 7.3137 2.7273 1.2438 31 1 5.9572 3.4701 2.1543 32 1 8.3135 4.8663 0.7706 33 1 7.6996 5.1146 2.4341 34 1 5.9216 6.4433 1.7130 35 1 6.9772 6.7254 0.3004 36 1 4.4236 5.3507 0.3766 37 1 5.4786 5.6330 -1.0366 38 1 4.5498 -2.4457 -0.5028 39 1 5.6083 -1.0147 -0.5093 40 1 7.4001 -3.4300 3.1054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054537881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:34 Heat of formation + Delta-G solvation = 4.880641 kcal Electronic energy + Delta-G solvation = -21653.055508 eV Core-core repulsion = 18467.941558 eV Total energy + Delta-G solvation = -3185.113950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.50698 -40.94637 -38.15187 -36.31149 -35.57434 -34.00444 -31.37910 -30.74276 -29.59813 -29.21642 -28.02841 -24.60208 -23.84215 -21.87864 -21.39920 -21.02334 -20.27356 -19.27751 -18.55587 -18.01916 -16.85149 -16.72581 -16.38683 -16.12591 -15.66799 -15.42813 -14.93809 -14.54203 -14.33599 -14.29402 -14.17641 -13.79974 -13.53217 -13.18037 -13.07240 -12.83019 -12.55462 -12.25744 -12.15302 -12.06663 -11.99649 -11.87792 -11.78091 -11.73388 -11.46087 -11.26569 -10.92624 -10.82443 -9.64269 -9.10220 -8.43589 -6.56488 0.74683 1.27781 1.31738 1.38501 1.46727 1.60733 2.02404 2.19213 2.23699 2.87671 3.36489 3.56408 3.74527 3.76209 4.09514 4.23353 4.42372 4.45168 4.51734 4.55557 4.56561 4.58342 4.66587 4.79105 4.85524 4.86684 4.92631 4.96042 5.11327 5.11989 5.17432 5.20277 5.21979 5.28837 5.39102 5.50467 5.85218 5.96407 6.18985 6.32176 6.47547 6.91798 6.99123 7.08641 8.72874 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.006538 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.036008 B = 4281.520364 C = 6151.694732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.309 4.309 4 C 0.301 3.699 5 N -0.639 5.639 6 C 0.523 3.477 7 O -0.541 6.541 8 C -0.100 4.100 9 C -0.121 4.121 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.111 4.111 13 N -0.367 5.367 14 C 0.239 3.761 15 C -0.554 4.554 16 H 0.021 0.979 17 C 0.026 3.974 18 N -0.933 5.933 19 Si 0.949 3.051 20 H -0.243 1.243 21 H -0.279 1.279 22 H -0.248 1.248 23 N -0.329 5.329 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.167 0.833 28 H 0.421 0.579 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 15.331 -8.859 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.341 4.341 4 C 0.078 3.922 5 N -0.286 5.286 6 C 0.313 3.687 7 O -0.416 6.416 8 C -0.122 4.122 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.158 4.158 12 C -0.149 4.149 13 N -0.152 5.152 14 C 0.119 3.881 15 C -0.592 4.592 16 H 0.039 0.961 17 C -0.174 4.174 18 N -0.571 5.571 19 Si 0.769 3.231 20 H -0.167 1.167 21 H -0.204 1.204 22 H -0.172 1.172 23 N -0.153 5.153 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.184 0.816 28 H 0.259 0.741 29 H 0.152 0.848 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.747 14.298 -8.738 16.848 hybrid contribution 0.754 -0.302 0.301 0.866 sum 2.501 13.997 -8.437 16.533 Atomic orbital electron populations 1.20235 0.83847 1.04232 1.03634 1.22902 0.98799 0.90050 0.98775 1.21488 0.89219 1.00824 1.22547 1.18381 0.89808 0.82802 1.01166 1.43076 1.07351 1.06120 1.72086 1.21513 0.92642 0.80612 0.73971 1.90582 1.28523 1.73840 1.48689 1.22358 0.92568 0.94989 1.02247 1.22636 0.98406 1.00292 0.94609 1.22345 0.98271 0.92581 1.02223 1.22138 0.96455 0.98091 0.99069 1.22096 1.00025 0.91074 1.01659 1.48822 1.06132 1.02717 1.57519 1.19749 0.80528 0.90682 0.97167 1.21199 1.14116 1.33040 0.90875 0.96065 1.25819 0.97538 0.95091 0.98997 1.70031 1.27793 1.37793 1.21503 0.85713 0.79535 0.78982 0.78841 1.16674 1.20426 1.17174 1.77295 0.86273 1.23475 1.28295 0.89953 0.88465 0.90365 0.81570 0.74104 0.84844 0.89872 0.92990 0.89464 0.90905 0.91968 0.89635 0.92075 0.89855 0.93044 0.91575 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.44 7.21 43.07 0.31 2.75 16 3 C -0.31 -12.85 9.58 22.14 0.21 -12.64 16 4 C 0.30 12.82 7.66 131.32 1.01 13.83 16 5 N -0.64 -22.04 5.40 -308.57 -1.67 -23.71 16 6 C 0.52 16.15 7.09 87.66 0.62 16.77 16 7 O -0.54 -19.72 12.55 -3.03 -0.04 -19.76 16 8 C -0.10 -2.11 3.26 -10.34 -0.03 -2.15 16 9 C -0.12 -2.52 6.34 32.01 0.20 -2.32 16 10 C -0.12 -1.79 6.82 31.67 0.22 -1.57 16 11 C -0.12 -1.81 6.80 31.32 0.21 -1.60 16 12 C -0.11 -2.12 6.19 31.32 0.19 -1.93 16 13 N -0.37 -17.28 3.60 -348.71 -1.26 -18.54 16 14 C 0.24 11.23 5.07 85.63 0.43 11.67 16 15 C -0.55 -31.29 9.94 25.60 0.25 -31.03 16 16 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 17 C 0.03 1.42 5.47 84.65 0.46 1.88 16 18 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 19 Si 0.95 39.29 27.47 68.60 1.88 41.18 16 20 H -0.24 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.25 -9.64 6.54 99.48 0.65 -8.99 16 23 N -0.33 -15.55 12.57 -47.45 -0.60 -16.15 16 24 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.17 6.72 5.83 -2.91 -0.02 6.70 16 28 H 0.42 12.97 7.97 -92.71 -0.74 12.23 16 29 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.32 8.05 -2.39 -0.02 1.31 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.49 6.85 -2.39 -0.02 1.48 16 37 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.05 2.44 7.20 -2.39 -0.02 2.42 16 39 H 0.07 2.66 6.93 -2.39 -0.02 2.65 16 40 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -73.59 328.79 3.71 -69.88 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.25 Total: 29.68 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 4.84 Total: -7.33 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -3.22 Total: -113.64 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.04 Total: -19.76 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.88 Total: 41.18 kcal Total: -73.59 3.71 -69.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054537881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.757 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds