Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30442 * 125.97953 * 2 1 4 4 N 1.39925 * 108.96620 * 180.26661 * 3 2 1 5 5 C 1.46497 * 125.74722 * 179.77557 * 4 3 2 6 6 C 1.34400 * 108.51349 * 359.74987 * 4 3 2 7 7 C 1.50700 * 126.32074 * 180.02562 * 6 4 3 8 8 C 1.38287 * 107.36285 * 0.02562 * 6 4 3 9 9 C 1.46972 * 126.44074 * 179.97438 * 8 6 4 10 10 C 1.35041 * 119.99617 * 129.99817 * 9 8 6 11 11 C 1.41830 * 119.99665 * 179.72169 * 10 9 8 12 12 O 1.21743 * 120.00058 * 0.28213 * 11 10 9 13 13 N 1.34777 * 120.00115 * 180.27577 * 11 10 9 14 14 C 1.46506 * 119.99608 * 0.02562 * 13 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 16 16 C 1.50700 * 109.46912 * 90.00398 * 15 13 11 17 17 H 1.07996 * 119.99893 * 0.02562 * 16 15 13 18 18 C 1.37875 * 119.99705 * 179.97438 * 16 15 13 19 19 N 1.31510 * 120.00154 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99994 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47270 * 89.99941 * 20 18 16 22 22 H 1.48505 * 109.47156 * 209.99856 * 20 18 16 23 23 H 1.48490 * 109.47349 * 329.99793 * 20 18 16 24 24 H 1.09002 * 109.46969 * 270.14718 * 1 2 3 25 25 H 1.08993 * 109.47395 * 30.14354 * 1 2 3 26 26 H 1.08996 * 109.47245 * 150.14432 * 1 2 3 27 27 H 1.08997 * 109.47145 * 269.97686 * 5 4 3 28 28 H 1.09007 * 109.46970 * 29.97280 * 5 4 3 29 29 H 1.08993 * 109.47507 * 149.96888 * 5 4 3 30 30 H 1.09000 * 109.47276 * 269.97648 * 7 6 4 31 31 H 1.08999 * 109.46891 * 29.97412 * 7 6 4 32 32 H 1.09004 * 109.47385 * 149.97418 * 7 6 4 33 33 H 1.07992 * 119.99826 * 310.00546 * 9 8 6 34 34 H 1.08002 * 120.00549 * 0.02562 * 10 9 8 35 35 H 1.08998 * 109.46921 * 90.00158 * 14 13 11 36 36 H 1.09001 * 109.46578 * 209.99712 * 14 13 11 37 37 H 1.08994 * 109.46996 * 329.99576 * 14 13 11 38 38 H 1.09006 * 109.46623 * 210.00451 * 15 13 11 39 39 H 1.09003 * 109.47332 * 329.99937 * 15 13 11 40 40 H 0.97001 * 120.00649 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0556 0.0000 4 7 3.6113 0.6462 -0.0062 5 6 4.7776 1.5327 -0.0128 6 6 3.6465 -0.6974 -0.0044 7 6 4.8837 -1.5579 -0.0089 8 6 2.3379 -1.1445 0.0023 9 6 1.8941 -2.5456 0.0058 10 6 0.9778 -2.9612 0.9065 11 6 0.5452 -4.3119 0.9061 12 8 1.0036 -5.0977 0.0971 13 7 -0.3734 -4.7256 1.8014 14 6 -0.9254 -3.7798 2.7747 15 6 -0.8199 -6.1209 1.8013 16 6 0.0650 -6.9315 2.7129 17 1 0.8783 -6.4549 3.2399 18 6 -0.1645 -8.2813 2.8749 19 7 0.6080 -8.9889 3.6699 20 14 -1.5717 -9.1054 1.9638 21 1 -1.0890 -9.5981 0.6487 22 1 -2.0781 -10.2486 2.7651 23 1 -2.6668 -8.1249 1.7534 24 1 -0.3633 0.0026 1.0277 25 1 -0.3634 0.8886 -0.5160 26 1 -0.3633 -0.8912 -0.5116 27 1 5.0620 1.7512 -1.0421 28 1 4.5306 2.4619 0.5009 29 1 5.6077 1.0449 0.4979 30 1 5.1770 -1.7672 -1.0376 31 1 5.6926 -1.0338 0.5001 32 1 4.6763 -2.4951 0.5077 33 1 2.3008 -3.2426 -0.7119 34 1 0.5709 -2.2641 1.6240 35 1 -1.8130 -3.3050 2.3567 36 1 -1.1937 -4.3126 3.6870 37 1 -0.1800 -3.0185 3.0044 38 1 -1.8499 -6.1727 2.1543 39 1 -0.7623 -6.5208 0.7889 40 1 0.4469 -9.9386 3.7836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058393097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = 60.260830 kcal Electronic energy + Delta-G solvation = -21024.499244 eV Core-core repulsion = 17841.786760 eV Total energy + Delta-G solvation = -3182.712485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39018 -39.09641 -35.04085 -34.65492 -33.45807 -32.48008 -31.20165 -29.64428 -28.62825 -27.06271 -26.01667 -25.57770 -23.38177 -21.38147 -19.59134 -19.47374 -18.00254 -16.87989 -16.85291 -16.26599 -15.93218 -15.23790 -14.54919 -14.19840 -14.09346 -13.81956 -13.65150 -13.39975 -13.18449 -13.03315 -12.74959 -12.61362 -12.38956 -12.27103 -12.20103 -12.01224 -11.96531 -11.67928 -11.28163 -10.86009 -10.65303 -10.45980 -10.10787 -9.52817 -9.48026 -9.24998 -8.99550 -8.53754 -8.04837 -7.55630 -6.03599 -4.01736 1.30995 1.84686 2.26780 2.71910 3.33517 3.39482 3.41397 3.98816 4.18722 4.27082 4.41915 4.44609 4.74006 4.78359 4.88548 5.07159 5.18053 5.20741 5.27982 5.30364 5.40986 5.54197 5.58659 5.66558 5.73079 5.79525 5.89953 5.92630 5.95079 6.25101 6.49289 6.56609 6.66792 6.83350 6.84661 7.05566 7.45401 7.59665 7.67554 8.36743 8.53495 8.99584 9.10104 9.57180 11.09944 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.003649 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.680977 B = 7671.864970 C = 8137.087440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.099 3.901 3 N -0.305 5.305 4 N -0.369 5.369 5 C 0.100 3.900 6 C 0.104 3.896 7 C -0.095 4.095 8 C -0.224 4.224 9 C 0.011 3.989 10 C -0.205 4.205 11 C 0.539 3.461 12 O -0.550 6.550 13 N -0.595 5.595 14 C 0.083 3.917 15 C 0.215 3.785 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 21.429 -6.453 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 N -0.127 5.127 4 N -0.149 5.149 5 C -0.041 4.041 6 C -0.025 4.025 7 C -0.154 4.154 8 C -0.235 4.235 9 C -0.011 4.011 10 C -0.226 4.226 11 C 0.330 3.670 12 O -0.431 6.431 13 N -0.326 5.326 14 C -0.061 4.061 15 C 0.094 3.906 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.230 22.207 -6.772 23.799 hybrid contribution -0.566 -1.271 -0.172 1.402 sum 4.663 20.936 -6.945 22.546 Atomic orbital electron populations 1.20256 0.86290 1.03581 1.03311 1.22493 0.96812 0.89583 0.97869 1.77033 0.86008 1.22782 1.26905 1.48069 1.05690 1.04173 1.56978 1.21856 0.84379 0.94462 1.03402 1.21572 0.96727 0.84395 0.99805 1.20535 0.92045 0.99037 1.03753 1.19104 0.90872 0.93908 1.19629 1.21513 0.93156 0.91176 0.95211 1.22171 1.02384 0.96463 1.01551 1.17034 0.80060 0.88157 0.81744 1.90775 1.56086 1.56584 1.39669 1.47765 1.41029 1.11753 1.32067 1.21688 0.97786 0.93157 0.93427 1.19646 0.95043 0.77648 0.98276 1.21357 1.15395 0.93480 1.26256 0.90787 1.24864 0.96285 0.97036 0.94920 1.69899 1.38685 1.07542 1.37696 0.86836 0.82975 0.79491 0.80308 1.19906 1.21149 1.19036 0.90172 0.90886 0.89911 0.90672 0.89225 0.89419 0.89708 0.90991 0.88831 0.85144 0.86006 0.93661 0.90729 0.91961 0.95316 0.94498 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.61 36.00 0.35 -0.44 16 2 C 0.10 1.29 7.23 -81.97 -0.59 0.70 16 3 N -0.31 -4.10 12.49 33.92 0.42 -3.67 16 4 N -0.37 -4.14 3.98 -63.25 -0.25 -4.40 16 5 C 0.10 0.64 11.24 59.85 0.67 1.31 16 6 C 0.10 1.22 7.02 -81.45 -0.57 0.64 16 7 C -0.10 -0.81 9.93 36.01 0.36 -0.45 16 8 C -0.22 -3.04 5.83 -105.13 -0.61 -3.65 16 9 C 0.01 0.16 8.98 -37.18 -0.33 -0.17 16 10 C -0.20 -3.35 7.99 -39.35 -0.31 -3.66 16 11 C 0.54 11.55 7.45 -14.89 -0.11 11.43 16 12 O -0.55 -13.97 15.68 5.15 0.08 -13.89 16 13 N -0.60 -12.81 2.86 -186.32 -0.53 -13.34 16 14 C 0.08 1.34 10.13 59.85 0.61 1.95 16 15 C 0.21 5.42 4.23 -5.19 -0.02 5.39 16 16 C -0.53 -15.50 9.94 -34.44 -0.34 -15.84 16 17 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 20 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.85 7.82 -51.93 -0.41 0.45 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.09 0.36 7.02 -51.93 -0.36 0.00 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.44 7.06 -51.93 -0.37 0.08 16 32 H 0.09 0.89 7.97 -51.93 -0.41 0.48 16 33 H 0.13 2.07 7.45 -52.49 -0.39 1.68 16 34 H 0.12 1.71 5.90 -52.49 -0.31 1.40 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.06 0.86 6.08 -51.93 -0.32 0.54 16 38 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 39 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -37.42 338.81 -5.92 -43.34 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.84 Total: -2.25 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.02 Total: -0.78 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.41 Total: -48.77 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.42 -5.92 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058393097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.604 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds