Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30442 * 125.97953 * 2 1 4 4 N 1.39925 * 108.96620 * 180.26661 * 3 2 1 5 5 C 1.46497 * 125.74722 * 179.77557 * 4 3 2 6 6 C 1.34400 * 108.51349 * 359.74987 * 4 3 2 7 7 C 1.50700 * 126.32074 * 180.02562 * 6 4 3 8 8 C 1.38287 * 107.36285 * 0.02562 * 6 4 3 9 9 C 1.46972 * 126.44074 * 179.97438 * 8 6 4 10 10 C 1.35041 * 119.99617 * 129.99817 * 9 8 6 11 11 C 1.41830 * 119.99665 * 179.72169 * 10 9 8 12 12 O 1.21743 * 120.00058 * 0.28213 * 11 10 9 13 13 N 1.34777 * 120.00115 * 180.27577 * 11 10 9 14 14 C 1.46506 * 119.99608 * 0.02562 * 13 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 16 16 C 1.50700 * 109.46912 * 90.00398 * 15 13 11 17 17 H 1.07996 * 119.99893 * 0.02562 * 16 15 13 18 18 C 1.37875 * 119.99705 * 179.97438 * 16 15 13 19 19 N 1.31510 * 120.00154 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99994 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47270 * 89.99941 * 20 18 16 22 22 H 1.48505 * 109.47156 * 209.99856 * 20 18 16 23 23 H 1.48490 * 109.47349 * 329.99793 * 20 18 16 24 24 H 1.09002 * 109.46969 * 270.14718 * 1 2 3 25 25 H 1.08993 * 109.47395 * 30.14354 * 1 2 3 26 26 H 1.08996 * 109.47245 * 150.14432 * 1 2 3 27 27 H 1.08997 * 109.47145 * 269.97686 * 5 4 3 28 28 H 1.09007 * 109.46970 * 29.97280 * 5 4 3 29 29 H 1.08993 * 109.47507 * 149.96888 * 5 4 3 30 30 H 1.09000 * 109.47276 * 269.97648 * 7 6 4 31 31 H 1.08999 * 109.46891 * 29.97412 * 7 6 4 32 32 H 1.09004 * 109.47385 * 149.97418 * 7 6 4 33 33 H 1.07992 * 119.99826 * 310.00546 * 9 8 6 34 34 H 1.08002 * 120.00549 * 0.02562 * 10 9 8 35 35 H 1.08998 * 109.46921 * 90.00158 * 14 13 11 36 36 H 1.09001 * 109.46578 * 209.99712 * 14 13 11 37 37 H 1.08994 * 109.46996 * 329.99576 * 14 13 11 38 38 H 1.09006 * 109.46623 * 210.00451 * 15 13 11 39 39 H 1.09003 * 109.47332 * 329.99937 * 15 13 11 40 40 H 0.97001 * 120.00649 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0556 0.0000 4 7 3.6113 0.6462 -0.0062 5 6 4.7776 1.5327 -0.0128 6 6 3.6465 -0.6974 -0.0044 7 6 4.8837 -1.5579 -0.0089 8 6 2.3379 -1.1445 0.0023 9 6 1.8941 -2.5456 0.0058 10 6 0.9778 -2.9612 0.9065 11 6 0.5452 -4.3119 0.9061 12 8 1.0036 -5.0977 0.0971 13 7 -0.3734 -4.7256 1.8014 14 6 -0.9254 -3.7798 2.7747 15 6 -0.8199 -6.1209 1.8013 16 6 0.0650 -6.9315 2.7129 17 1 0.8783 -6.4549 3.2399 18 6 -0.1645 -8.2813 2.8749 19 7 0.6080 -8.9889 3.6699 20 14 -1.5717 -9.1054 1.9638 21 1 -1.0890 -9.5981 0.6487 22 1 -2.0781 -10.2486 2.7651 23 1 -2.6668 -8.1249 1.7534 24 1 -0.3633 0.0026 1.0277 25 1 -0.3634 0.8886 -0.5160 26 1 -0.3633 -0.8912 -0.5116 27 1 5.0620 1.7512 -1.0421 28 1 4.5306 2.4619 0.5009 29 1 5.6077 1.0449 0.4979 30 1 5.1770 -1.7672 -1.0376 31 1 5.6926 -1.0338 0.5001 32 1 4.6763 -2.4951 0.5077 33 1 2.3008 -3.2426 -0.7119 34 1 0.5709 -2.2641 1.6240 35 1 -1.8130 -3.3050 2.3567 36 1 -1.1937 -4.3126 3.6870 37 1 -0.1800 -3.0185 3.0044 38 1 -1.8499 -6.1727 2.1543 39 1 -0.7623 -6.5208 0.7889 40 1 0.4469 -9.9386 3.7836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058393097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = 34.348580 kcal Electronic energy + Delta-G solvation = -21025.622884 eV Core-core repulsion = 17841.786760 eV Total energy + Delta-G solvation = -3183.836124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.29378 -40.74423 -36.67978 -35.72521 -34.72354 -34.41934 -32.23504 -30.52636 -30.32618 -28.12543 -27.31319 -26.59887 -24.98194 -22.89957 -20.66103 -20.42597 -19.42475 -19.11617 -18.24314 -17.32775 -16.95668 -16.66954 -16.33268 -15.72854 -15.18630 -14.91402 -14.76553 -14.41499 -14.23988 -14.07760 -14.00178 -13.81888 -13.61868 -13.54274 -13.33742 -13.12726 -13.05759 -12.80013 -12.75137 -12.57340 -12.35635 -12.00858 -11.72782 -11.63553 -10.81551 -10.76350 -10.67405 -10.09988 -9.38598 -9.00274 -8.32139 -6.37218 0.11906 0.87115 1.34736 1.39125 1.47866 1.53133 1.68262 2.33340 2.42124 2.64717 3.02182 3.48271 3.62412 3.97270 4.03419 4.16482 4.26439 4.34542 4.38344 4.49329 4.55357 4.61706 4.69062 4.69790 4.79421 4.83232 4.84031 4.96658 4.99345 5.00855 5.04849 5.11035 5.40362 5.46653 5.48296 5.64361 5.70835 6.02852 6.27386 6.63773 6.68396 6.75844 7.23457 7.46890 8.85017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.003649 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.680977 B = 7671.864970 C = 8137.087440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.094 3.906 3 N -0.331 5.331 4 N -0.367 5.367 5 C 0.088 3.912 6 C 0.114 3.886 7 C -0.096 4.096 8 C -0.261 4.261 9 C 0.044 3.956 10 C -0.219 4.219 11 C 0.533 3.467 12 O -0.606 6.606 13 N -0.606 5.606 14 C 0.077 3.923 15 C 0.223 3.777 16 C -0.537 4.537 17 H 0.026 0.974 18 C 0.010 3.990 19 N -0.946 5.946 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.274 1.274 23 H -0.237 1.237 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.019 0.981 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 23.442 -7.014 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 N -0.153 5.153 4 N -0.146 5.146 5 C -0.051 4.051 6 C -0.017 4.017 7 C -0.154 4.154 8 C -0.273 4.273 9 C 0.022 3.978 10 C -0.240 4.240 11 C 0.326 3.674 12 O -0.491 6.491 13 N -0.335 5.335 14 C -0.064 4.064 15 C 0.100 3.900 16 C -0.576 4.576 17 H 0.045 0.955 18 C -0.188 4.188 19 N -0.587 5.587 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.199 1.199 23 H -0.160 1.160 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.167 0.833 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.635 24.298 -7.303 25.792 hybrid contribution -0.171 -1.761 0.001 1.770 sum 4.464 22.537 -7.302 24.107 Atomic orbital electron populations 1.20348 0.84866 1.03956 1.04324 1.22852 0.97942 0.89160 0.97206 1.76990 0.87161 1.23239 1.27943 1.48481 1.06093 1.04536 1.55508 1.22285 0.83458 0.94373 1.05019 1.22005 0.97085 0.85049 0.97606 1.20663 0.91602 0.98161 1.04977 1.19112 0.92232 0.93037 1.22881 1.21481 0.91220 0.91851 0.93208 1.21933 1.04324 0.94159 1.03617 1.17772 0.79183 0.89648 0.80749 1.90733 1.58009 1.58401 1.41937 1.47878 1.41316 1.11116 1.33231 1.21987 0.99783 0.92568 0.92107 1.19338 0.95142 0.79451 0.96032 1.21580 1.14931 0.94380 1.26662 0.95523 1.25878 0.99499 0.97687 0.95738 1.70051 1.40976 1.08162 1.39480 0.85679 0.79763 0.78926 0.78367 1.20123 1.19922 1.16034 0.88775 0.89858 0.90154 0.89045 0.88590 0.86784 0.88146 0.88038 0.90216 0.86666 0.83310 0.89977 0.91549 0.89640 0.93068 0.96252 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.61 71.24 0.68 -0.76 16 2 C 0.09 2.33 7.23 43.55 0.32 2.64 16 3 N -0.33 -8.31 12.49 -46.59 -0.58 -8.89 16 4 N -0.37 -7.39 3.98 -354.01 -1.41 -8.80 16 5 C 0.09 0.85 11.24 127.77 1.44 2.28 16 6 C 0.11 2.45 7.02 42.18 0.30 2.74 16 7 C -0.10 -1.42 9.93 71.24 0.71 -0.71 16 8 C -0.26 -6.80 5.83 -20.19 -0.12 -6.92 16 9 C 0.04 1.32 8.98 23.82 0.21 1.53 16 10 C -0.22 -7.10 7.99 22.42 0.18 -6.92 16 11 C 0.53 23.20 7.45 85.13 0.63 23.83 16 12 O -0.61 -32.00 15.68 -4.49 -0.07 -32.07 16 13 N -0.61 -26.03 2.86 -861.59 -2.46 -28.49 16 14 C 0.08 2.36 10.13 127.77 1.29 3.65 16 15 C 0.22 11.28 4.23 85.63 0.36 11.64 16 16 C -0.54 -32.61 9.94 25.60 0.25 -32.36 16 17 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 18 C 0.01 0.59 5.47 84.65 0.46 1.05 16 19 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 20 Si 0.95 45.26 27.47 68.60 1.88 47.15 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.55 7.82 -2.39 -0.02 1.53 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.11 0.50 7.02 -2.39 -0.02 0.48 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.10 0.89 7.06 -2.39 -0.02 0.88 16 32 H 0.08 1.45 7.97 -2.38 -0.02 1.43 16 33 H 0.12 3.78 7.45 -2.91 -0.02 3.76 16 34 H 0.15 3.90 5.90 -2.91 -0.02 3.89 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 37 H 0.09 2.18 6.08 -2.39 -0.01 2.17 16 38 H 0.05 2.35 7.13 -2.38 -0.02 2.34 16 39 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 40 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -85.09 338.81 5.36 -79.73 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.98 Total: 10.25 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.72 Total: 1.70 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -4.15 Total: -106.75 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.07 Total: -32.07 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -85.09 5.36 -79.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058393097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.084 kcal (2) G-P(sol) polarization free energy of solvation -85.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds