Wall clock time and date at job start Mon Mar 30 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39878 * 125.89453 * 2 1 4 4 C 1.35316 * 107.91777 * 180.14411 * 3 2 1 5 5 C 1.50695 * 126.12545 * 179.90295 * 4 3 2 6 6 N 1.34946 * 107.74727 * 359.64046 * 4 3 2 7 7 C 1.46495 * 126.03831 * 180.21044 * 6 4 3 8 8 C 1.52994 * 109.47372 * 89.99721 * 7 6 4 9 9 C 1.50702 * 109.47382 * 179.97438 * 8 7 6 10 10 O 1.21295 * 119.99937 * 359.97438 * 9 8 7 11 11 N 1.34767 * 120.00347 * 179.97438 * 9 8 7 12 12 C 1.37107 * 120.00367 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99699 * 140.10358 * 12 11 9 14 14 C 1.38943 * 119.99435 * 320.10399 * 12 11 9 15 15 N 1.31417 * 119.99634 * 161.98499 * 14 12 11 16 16 Si 1.86800 * 120.00509 * 341.98117 * 14 12 11 17 17 H 1.48499 * 109.47055 * 93.80118 * 16 14 12 18 18 H 1.48501 * 109.47541 * 213.80408 * 16 14 12 19 19 H 1.48500 * 109.47013 * 333.80265 * 16 14 12 20 20 C 1.46505 * 120.00063 * 0.02562 * 11 9 8 21 21 C 1.52994 * 117.50017 * 182.28939 * 20 11 9 22 22 C 1.52995 * 117.49950 * 113.66498 * 20 11 9 23 23 N 1.30835 * 125.90223 * 179.74022 * 2 1 3 24 24 H 1.08996 * 109.46895 * 270.23498 * 1 2 3 25 25 H 1.08997 * 109.47602 * 30.23852 * 1 2 3 26 26 H 1.09007 * 109.46872 * 150.23815 * 1 2 3 27 27 H 1.07999 * 126.03981 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47368 * 269.69224 * 5 4 3 29 29 H 1.08998 * 109.47149 * 149.68861 * 5 4 3 30 30 H 1.09004 * 109.47228 * 29.68834 * 5 4 3 31 31 H 1.09001 * 109.47030 * 209.99886 * 7 6 4 32 32 H 1.09000 * 109.47151 * 329.99424 * 7 6 4 33 33 H 1.09001 * 109.47178 * 300.00074 * 8 7 6 34 34 H 1.08998 * 109.47347 * 60.00522 * 8 7 6 35 35 H 0.97005 * 119.99347 * 179.97438 * 15 14 12 36 36 H 1.09001 * 115.54685 * 327.99643 * 20 11 9 37 37 H 1.08998 * 117.50246 * 359.97438 * 21 20 11 38 38 H 1.09002 * 117.50101 * 145.01842 * 21 20 11 39 39 H 1.08995 * 117.50113 * 214.98103 * 22 20 11 40 40 H 1.09002 * 117.50261 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8349 1.5991 -0.0065 6 7 3.6088 -0.6339 0.0028 7 6 4.7900 -1.5005 0.0064 8 6 5.2017 -1.7957 1.4500 9 6 6.4164 -2.6876 1.4537 10 8 6.9045 -3.0519 0.4047 11 7 6.9604 -3.0806 2.6224 12 6 8.0658 -3.8917 2.6257 13 1 8.8564 -3.7240 3.3421 14 6 8.1687 -4.9294 1.7075 15 7 9.3383 -5.4761 1.4623 16 14 6.6447 -5.5474 0.8215 17 1 6.5112 -4.8469 -0.4811 18 1 6.7665 -7.0088 0.5876 19 1 5.4448 -5.2776 1.6538 20 6 6.3705 -2.6412 3.8894 21 6 7.0654 -3.0770 5.1809 22 6 5.7313 -3.7092 4.7791 23 7 2.2743 -1.0598 0.0048 24 1 -0.3633 0.0042 1.0276 25 1 -0.3634 0.8878 -0.5175 26 1 -0.3633 -0.8922 -0.5102 27 1 1.9922 2.1599 0.0004 28 1 5.1299 1.8076 -1.0349 29 1 5.6508 1.0936 0.5101 30 1 4.6071 2.5354 0.5030 31 1 4.5563 -2.4353 -0.5031 32 1 5.6092 -1.0002 -0.5100 33 1 5.4354 -0.8608 1.9596 34 1 4.3826 -2.2960 1.9664 35 1 9.4101 -6.2008 0.8215 36 1 5.9071 -1.6547 3.8751 37 1 7.9612 -3.6911 5.0880 38 1 7.0593 -2.3772 6.0166 39 1 4.8476 -3.4253 5.3504 40 1 5.7492 -4.7388 4.4216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:28 Heat of formation + Delta-G solvation = 76.445902 kcal Electronic energy + Delta-G solvation = -21841.517480 eV Core-core repulsion = 18659.506832 eV Total energy + Delta-G solvation = -3182.010647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20656 -39.28782 -36.62936 -34.58410 -33.01345 -32.28638 -31.56769 -30.67482 -27.96069 -26.95526 -25.22693 -23.15792 -21.95618 -21.39854 -20.31302 -19.39059 -19.00758 -17.34915 -16.52065 -15.92584 -15.60206 -15.28188 -14.76788 -14.21383 -13.89849 -13.76977 -13.50632 -13.36547 -13.27775 -12.82800 -12.76378 -12.72734 -12.45520 -12.36958 -11.84063 -11.69148 -11.58679 -11.19436 -11.08798 -10.77456 -10.39877 -10.36481 -10.08989 -10.03169 -9.66452 -9.00312 -8.67059 -8.54331 -8.37545 -7.58966 -6.23973 -4.02423 1.95500 2.58804 2.82870 3.20020 3.46268 3.64352 3.73647 4.24375 4.42982 4.57438 4.64122 4.64347 4.98027 5.08813 5.11780 5.18040 5.31118 5.37452 5.40198 5.42750 5.53534 5.54994 5.60587 5.66350 5.68415 5.72519 5.79915 5.84596 6.03868 6.09359 6.11424 6.23401 6.28366 6.60404 6.78070 6.78864 7.15773 7.77034 7.85174 7.87947 8.67169 8.78996 9.35194 9.68473 10.79458 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.005242 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.001588 B = 5340.351986 C = 5664.806651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.064 3.936 3 C -0.281 4.281 4 C 0.087 3.913 5 C -0.096 4.096 6 N -0.362 5.362 7 C 0.147 3.853 8 C -0.147 4.147 9 C 0.447 3.553 10 O -0.544 6.544 11 N -0.428 5.428 12 C -0.350 4.350 13 H 0.099 0.901 14 C 0.089 3.911 15 N -0.865 5.865 16 Si 0.921 3.079 17 H -0.250 1.250 18 H -0.314 1.314 19 H -0.284 1.284 20 C 0.060 3.940 21 C -0.170 4.170 22 C -0.198 4.198 23 N -0.296 5.296 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.273 0.727 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 13.033 1.179 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C -0.310 4.310 4 C -0.041 4.041 5 C -0.154 4.154 6 N -0.144 5.144 7 C 0.026 3.974 8 C -0.188 4.188 9 C 0.238 3.762 10 O -0.428 6.428 11 N -0.148 5.148 12 C -0.476 4.476 13 H 0.116 0.884 14 C -0.120 4.120 15 N -0.500 5.500 16 Si 0.754 3.246 17 H -0.177 1.177 18 H -0.244 1.244 19 H -0.210 1.210 20 C -0.045 4.045 21 C -0.208 4.208 22 C -0.236 4.236 23 N -0.118 5.118 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.339 11.361 0.575 16.782 hybrid contribution -0.659 0.433 -0.199 0.814 sum -12.998 11.794 0.376 17.555 Atomic orbital electron populations 1.20124 0.87040 1.02939 1.02673 1.22275 0.96772 0.90934 1.00230 1.21037 0.90974 0.99476 1.19548 1.21144 0.97287 0.84865 1.00792 1.20488 0.93343 0.98122 1.03444 1.48764 1.05399 1.04135 1.56054 1.21494 0.83003 0.95260 0.97623 1.21915 0.98746 1.01044 0.97101 1.19888 0.87016 0.84442 0.84902 1.90537 1.63823 1.57841 1.30645 1.43120 1.26304 1.43638 1.01697 1.18810 0.95876 1.10862 1.22012 0.88393 1.25331 0.97204 0.94301 0.95157 1.69733 1.23629 1.24168 1.32424 0.86207 0.81741 0.74434 0.82246 1.17657 1.24399 1.21010 1.21829 1.01874 0.96527 0.84313 1.23128 0.97652 1.03666 0.96346 1.23269 0.96028 0.99993 1.04342 1.77352 0.86550 1.22774 1.25169 0.90797 0.90734 0.91156 0.83977 0.90183 0.90693 0.89738 0.88169 0.87940 0.89652 0.89365 0.91709 0.87213 0.87025 0.89358 0.89457 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.45 36.01 0.38 -0.30 16 2 C 0.06 0.89 7.22 -82.40 -0.59 0.30 16 3 C -0.28 -3.60 10.65 -40.01 -0.43 -4.03 16 4 C 0.09 1.18 6.93 -82.27 -0.57 0.61 16 5 C -0.10 -0.96 9.90 36.00 0.36 -0.60 16 6 N -0.36 -5.81 3.61 -57.15 -0.21 -6.02 16 7 C 0.15 2.50 5.35 -4.05 -0.02 2.48 16 8 C -0.15 -2.60 4.65 -27.89 -0.13 -2.73 16 9 C 0.45 10.28 5.87 -10.99 -0.06 10.21 16 10 O -0.54 -14.41 10.83 5.54 0.06 -14.35 16 11 N -0.43 -10.05 2.56 -107.73 -0.28 -10.33 16 12 C -0.35 -9.62 8.77 -14.93 -0.13 -9.75 16 13 H 0.10 2.80 6.96 -52.49 -0.37 2.44 16 14 C 0.09 2.61 4.90 -17.47 -0.09 2.52 16 15 N -0.86 -26.18 13.96 55.50 0.77 -25.41 16 16 Si 0.92 24.72 24.53 -169.99 -4.17 20.55 16 17 H -0.25 -6.94 6.10 56.52 0.34 -6.59 16 18 H -0.31 -8.33 7.11 56.52 0.40 -7.93 16 19 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 20 C 0.06 1.12 5.85 -67.93 -0.40 0.72 16 21 C -0.17 -2.88 9.79 -26.74 -0.26 -3.15 16 22 C -0.20 -3.39 10.37 -26.74 -0.28 -3.66 16 23 N -0.30 -5.02 12.58 33.67 0.42 -4.60 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.78 7.72 -51.93 -0.40 0.38 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.88 8.10 -51.93 -0.42 1.46 16 32 H 0.10 1.64 7.62 -51.93 -0.40 1.24 16 33 H 0.09 1.30 7.57 -51.93 -0.39 0.91 16 34 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 35 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 36 H 0.11 1.71 6.99 -51.93 -0.36 1.34 16 37 H 0.11 2.16 6.49 -51.93 -0.34 1.82 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -33.94 330.14 -6.74 -40.68 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.09 Total: 1.88 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.23 Total: -7.38 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.72 Total: -46.36 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.06 Total: -14.35 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.17 Total: 20.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.94 -6.74 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.128 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds